Trimin1|350438|estExt_Genemark1.C_Ctg_630018 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|350438
Unique Name	Trimin1\|350438\|estExt_Genemark1.C_Ctg_630018
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	354

Homology

[Close]

BLAST of jgi.p|Trimin1|350438 vs. uniprot
Match: A0A835YJA4_9STRA (Uncharacterized protein n=4 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJA4_9STRA)

HSP 1 Score: 609 bits (1571), Expect = 1.480e-218
Identity = 337/364 (92.58%), Postives = 342/364 (93.96%), Query Frame = 0

Query:    1 MSGESGESAEQATENPVDISDRLERFMNSVEQRLGALEDKIGAMAGSMQDVVAQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGVPTTLPIKLTGGQRVSKLHDVLARTAVYVDQKV--------VNMLGKATARSYQVLYTGFKLMRA---ELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLTAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVSWTNAARTLEVNGDIAARAVAAARKRKFDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPWGAPANCPYGVCWVWWRHVKEQNPVPCNVVPGPCKYRHSDT 353
            MSGESGESAEQATENPVDISDRLERFMNSVEQRLGAL+DKIGAMAGSMQDV+AQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGVPTTLPIKLTGGQR SKLHDVLARTAVYVDQK             GKATARSYQ LYTGFKLMRA   ELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADL AIQGAIHSDLDEWTSNLDALSTSLLQHH+LAPPFGSGEALDVPDIPTV+WTNAAR LEVNGDIAARAVAAARKRK+DGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQP GAPANCPYGVCWVWWRHVKEQNPVP NVVPGPCKYRHSDT
Sbjct:    1 MSGESGESAEQATENPVDISDRLERFMNSVEQRLGALQDKIGAMAGSMQDVMAQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGVPTTLPIKLTGGQRASKLHDVLARTAVYVDQKPNAFSFRDPATRSGKATARSYQALYTGFKLMRAALAELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHQLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPYGVCWVWWRHVKEQNPVPGNVVPGPCKYRHSDT 364

[Close]

BLAST of jgi.p|Trimin1|350438 vs. uniprot
Match: A0A836CLL4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLL4_9STRA)

HSP 1 Score: 609 bits (1571), Expect = 9.770e-217
Identity = 339/376 (90.16%), Postives = 344/376 (91.49%), Query Frame = 0

Query:    1 MSGESGESAEQATENPVDISDRLERFMNSVEQRLGALEDKIGAMAGSMQDVVAQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGVPTTLPIKLTGGQRVSKLHDVLARTAVYVDQKVVNML--------------------GKATARSYQVLYTGFKLMRA---ELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLTAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVSWTNAARTLEVNGDIAARAVAAARKRKFDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPWGAPANCPYGVCWVWWRHVKEQNPVPCNVVPGPCKYRHSDT 353
            MSGESGESAEQATENPVDISDRLERF+NSVEQRLGALEDKIGAMAGSMQDVVAQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGV TTLPIKLTGGQRVSKLHDVLARTAVYVDQKV NML                    GKATARSYQ LYTGFKLMRA   ELIGLGLTELPQGSRTF+SEM VCEVMLAKFEMLVVHQEGVTISDADL AIQGAI SDLDEWTSNLDA+STSLLQHHRLAPPFGSGEALDVPDIPTV+WTNAAR LEVNGDIAARAVAAARKRK+DGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQP GAPANCPYGVCWVWWRHVKEQNP PCNVVPGPCKYRHSDT
Sbjct:    1 MSGESGESAEQATENPVDISDRLERFINSVEQRLGALEDKIGAMAGSMQDVVAQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGVLTTLPIKLTGGQRVSKLHDVLARTAVYVDQKVANMLWDVSNLQPIAFSFRDPATRSGKATARSYQALYTGFKLMRAALAELIGLGLTELPQGSRTFVSEMAVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIQSDLDEWTSNLDAMSTSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPYGVCWVWWRHVKEQNPAPCNVVPGPCKYRHSDT 376

[Close]

BLAST of jgi.p|Trimin1|350438 vs. uniprot
Match: A0A836CHX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHX2_9STRA)

HSP 1 Score: 392 bits (1008), Expect = 3.320e-134
Identity = 216/230 (93.91%), Postives = 218/230 (94.78%), Query Frame = 0

Query:  131 GKATARSYQVLYTGFKLMRA-----ELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLTAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVSWTNAARTLEVNGDIAARAVAAARKRKFDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPWGAPANCP--YGVCWVWWRHVKEQNPVPCNVVPGPCKYRHSDT 353
            GKATARSYQ LYTGFKLMRA     ELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADL AIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTV+WTNAAR LEVNGDIAARAVAAARKRK+DGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQP GAPANCP  YG CWVWWRHVKEQNPVPCNVVPGPCKYRHSDT
Sbjct:   51 GKATARSYQALYTGFKLMRAALRLAELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPKAYGGCWVWWRHVKEQNPVPCNVVPGPCKYRHSDT 280

[Close]

BLAST of jgi.p|Trimin1|350438 vs. uniprot
Match: A0A836CCV7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCV7_9STRA)

HSP 1 Score: 321 bits (822), Expect = 8.680e-96
Identity = 177/205 (86.34%), Postives = 181/205 (88.29%), Query Frame = 0

Query:   44 MAGSMQDVVAQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGVPTTLPIKLTGGQRVSKLHDVLARTAVYVDQKVVNMLGKATARSYQVLYTGFKLMRAELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLTAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVS 248
            MAGS+QDVVAQEVQLQVEESSRSTSSEDTRERK LMENEAYR HLLLRCGVPTTLPIKLTGGQRVSKLHDVLARTAV          GKATARSYQ LY G KLMRAELIGLGLTELPQGSRTFMS+MEVCEVMLAKFEMLVVHQEGVTISDADL AIQGAIHSDL    +  DALST LLQHHRL PPFGSGEALDVPDIPTV+
Sbjct:    1 MAGSLQDVVAQEVQLQVEESSRSTSSEDTRERKLLMENEAYRCHLLLRCGVPTTLPIKLTGGQRVSKLHDVLARTAV----------GKATARSYQALYKGVKLMRAELIGLGLTELPQGSRTFMSKMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLTSGPAT-DALSTILLQHHRLPPPFGSGEALDVPDIPTVA 194

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350438 vs. uniprot

BLAST of jgi.p|Trimin1|350438 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
A0A835YJA4_9STRA	1.480e-218	92.58	Uncharacterized protein n=4 Tax=Tribonema minus Ta...	[more]
A0A836CLL4_9STRA	9.770e-217	90.16	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CHX2_9STRA	3.320e-134	93.91	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CCV7_9STRA	8.680e-96	86.34	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 20..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..77

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_63	contig	Contig_63:149496..150616 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350438	mRNA_10273	Tribonema minus UTEX_B_3156	mRNA	Contig_63 149496..150703 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|350438|estExt_Genemark1.C_Ctg_630018 ID=Trimin1|350438|estExt_Genemark1.C_Ctg_630018|Name=jgi.p|Trimin1|350438|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=354bp
MSGESGESAEQATENPVDISDRLERFMNSVEQRLGALEDKIGAMAGSMQD
VVAQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGVPTTLPI
KLTGGQRVSKLHDVLARTAVYVDQKVVNMLGKATARSYQVLYTGFKLMRA
ELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLTA
IQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVSWT
NAARTLEVNGDIAARAVAAARKRKFDGAFRGGGRPVGSGGGGAGAGGGAG
AAAGAGGTRSQPWGAPANCPYGVCWVWWRHVKEQNPVPCNVVPGPCKYRH
SDT*