mRNA_10327 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|169329
Unique NamemRNA_10327
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|169329 vs. uniprot
Match: A0A836CAN8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAN8_9STRA)

HSP 1 Score: 375 bits (963), Expect = 3.950e-132
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 1 
Query:    1 MDWTSGPDRYCVSVGDEPSWGWTRVFTMHAFAVSKYHLLERLDPPSYRIVKGTHIKPERDWRCCFAFFAFDGPVPGSTQLFVQMRGEPHIRSRVALTHSERWEDHLSMYVFCMPMPNTAQFNVHYTVRSAESLDAFPEQDRIHLGEPRDRWELKLTFYAYPSPVVLLEEPP 513
            MDWTSGPDRYCVSVGDEPSWGWTRVFTMHAFAVSKYHLLERLDPPSYRIVKGTHIKPERDWRCCFAFFAFDGPVPGSTQLFVQMRGEPHIRSRVALTHSERWEDHLSMYVFCMPMPNTAQFNVHYTVRSAESLDAFPEQDRIHLGEPRDRWELKLTFYAYPSPVVLLEEPP
Sbjct:    1 MDWTSGPDRYCVSVGDEPSWGWTRVFTMHAFAVSKYHLLERLDPPSYRIVKGTHIKPERDWRCCFAFFAFDGPVPGSTQLFVQMRGEPHIRSRVALTHSERWEDHLSMYVFCMPMPNTAQFNVHYTVRSAESLDAFPEQDRIHLGEPRDRWELKLTFYAYPSPVVLLEEPP 171
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BLAST of jgi.p|Trimin1|169329 vs. uniprot
Match: D8LKG0_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG0_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 4.920e-53
Identity = 81/168 (48.21%), Postives = 113/168 (67.26%), Query Frame = 1 
Query:    1 MDWTSGPDRYCVSVGDEPSWGWTRVFTMHAFAVSKYHLLERLDPP-SYRIVKGTHIKPERDWRCCFAFFAFDGPVPGSTQLFVQMRGEPHIRSRVALTHSERWEDHLSMYVFCMPMPNTAQFNVHYTVRSAESLDAFPEQDRIHLGEPRDRWELKLTFYAYPSPVVLL 501
            +DWTSGPDRY ++   EP WGWTR+FT  A+A SKYH+LE    P + +IVKG  + PE  W+C  AFFAF+  VPGS + +++ + EPH+R+R+ +  S RW+   S   F +P+P +   +VHYT+RS +SL+ +PEQ RI L +P   WE K  FYA+P+  VLL
Sbjct:  265 VDWTSGPDRYQITQDSEPEWGWTRLFTFFAYAASKYHVLETTQAPLAQKIVKGNFLTPEPGWKCVLAFFAFNDMVPGSNRYYIEEKDEPHLRTRIGMEASCRWDARHSFAAFDVPVPGSCALDVHYTIRSTDSLNPYPEQCRISLKDPWGSWEQKFRFYAFPAEQVLL 432
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169329 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CAN8_9STRA3.950e-132100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LKG0_ECTSI4.920e-5348.21WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_63contigContig_63:673345..675023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|169329|e_gw1.63.26.1
Hectar predicted targeting categoryother localisation
TranscriptId169651
TrackFilteredModels1
ProteinId169329
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169329gene_10327Tribonema minus UTEX_B_3156 geneContig_63 673345..675023 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10327_1exon_10327_1Tribonema minus UTEX_B_3156 exonContig_63 673345..673441 +
exon_10327_2exon_10327_2Tribonema minus UTEX_B_3156 exonContig_63 674219..674430 +
exon_10327_3exon_10327_3Tribonema minus UTEX_B_3156 exonContig_63 674817..675023 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10327CDS_10327Tribonema minus UTEX_B_3156 CDSContig_63 673345..673441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169329Trimin1|169329|e_gw1.63.26.1Tribonema minus UTEX_B_3156 polypeptideContig_63 673345..675023 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10327 ID=mRNA_10327|Name=jgi.p|Trimin1|169329|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=516bp|location=Sequence derived from alignment at Contig_63:673345..675023+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTGGACATCAGGACCCGATCGCTACTGCGTGTCGGTTGGCGACGA
ACCGTCATGGGGGTGGACACGCGTATTCACCATGCATGCCTTTGCGGTGA
GCAAATACCATCTGCTGGAGCGGTTGGACCCCCCCTCTTACCGAATAGTC
AAGGGTACCCACATCAAGCCCGAGAGAGACTGGAGGTGTTGCTTTGCCTT
CTTTGCATTTGATGGCCCGGTGCCTGGGTCCACCCAGCTCTTTGTGCAGA
TGCGGGGGGAGCCGCATATCCGCAGTAGAGTGGCGCTCACGCATAGTGAG
CGGTGGGAGGACCACCTGAGCATGTACGTCTTCTGTATGCCCATGCCCAA
CACGGCGCAGTTCAACGTGCACTACACTGTGCGCAGCGCAGAGAGCCTGG
ATGCCTTTCCTGAACAGGATCGCATTCATCTGGGGGAGCCCCGAGATCGC
TGGGAGCTCAAGCTTACCTTCTATGCTTATCCATCGCCGGTGGTGCTGCT
GGAGGAGCCGCCCTGA
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protein sequence of jgi.p|Trimin1|169329

>Trimin1|169329|e_gw1.63.26.1 ID=Trimin1|169329|e_gw1.63.26.1|Name=jgi.p|Trimin1|169329|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=172bp
MDWTSGPDRYCVSVGDEPSWGWTRVFTMHAFAVSKYHLLERLDPPSYRIV
KGTHIKPERDWRCCFAFFAFDGPVPGSTQLFVQMRGEPHIRSRVALTHSE
RWEDHLSMYVFCMPMPNTAQFNVHYTVRSAESLDAFPEQDRIHLGEPRDR
WELKLTFYAYPSPVVLLEEPP*
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mRNA from alignment at Contig_63:673345..675023+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10327 ID=mRNA_10327|Name=jgi.p|Trimin1|169329|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1679bp|location=Sequence derived from alignment at Contig_63:673345..675023+ (Tribonema minus UTEX_B_3156 )
ATGGATTGGACATCAGGACCCGATCGCTACTGCGTGTCGGTTGGCGACGA
ACCGTCATGGGGGTGGACACGCGTATTCACCATGCATGCCTTTGCGGGTA
AGGAACGAACCAAGTGCAATAGATGTCATGCCACAGCGACACTGGTACTT
GCCAAGTCCAACAGAGTGCCACCGTTGCTCATCAGTATCAGTCACAACCT
GTGCTGCTTTCTGCTTGCAAGTACTTGACTTCGTGCTACACAACACTACT
CTCAAGTACCTTTACTGATGTCAGTGCTGTCAGTAAAATGGTAATGAACC
CGCATGCGGTTCAGATACATACGGTCCATGAATGAGTGAATCCACATCAT
ATGGGAATAGGCACGCTGCTCACAGGGCTCCAATTCCTGCCCAAAGCACC
AGGGGTGATGCTGTGACTTCAAGCACAATGCTTCTGTGCCAGGGGCGTTT
CTGCATGCTTGGTGCCATCACATGTGGCGATGGAAAGTCACACGGCCGAG
CCATCACTCATTGTGCATCACAAACGTTGCAACTGCTTTCCAGCCTCTGA
TGCCTCTACACAGAAGACGCACAGCACTGAAGCCGGCACCGTTAAGGTAG
TGCAGCATGTTTTATTTCTTTCAGCCGCAGCGCGCAGTCACTGTGCACTG
GCTCTTTCATGCCAAACCTTGGCTACAATTGAGCATTGCTGCAGTAGATG
TCCTCTTTGCTGGATTCACATCATTGCGCGAAGACACGTGCGCGTACGAG
TAGGAAAAACAAACCATTGTAGCGTATGTGTACTGTGTTGTCATCACACG
CCTGCCCGTACACAATGGAATCCCTGACTCCTTTGCTCCGCCCCCTGCAC
ACCGTGTTTCGAGTGCTGCTGCAGTGAGCAAATACCATCTGCTGGAGCGG
TTGGACCCCCCCTCTTACCGAATAGTCAAGGGTACCCACATCAAGCCCGA
GAGAGACTGGAGGTGTTGCTTTGCCTTCTTTGCATTTGATGGCCCGGTGC
CTGGGTCCACCCAGCTCTTTGTGCAGATGCGGGGGGAGCCGCATATCCGC
AGTAGAGTGGCGCTCACGCATAGTGAGCGGTGGGAGGTGAGCATCAACGC
TCAGTATAAGTCAGTGTGTGTACATGCAAAGTTAGCTGAAGTTGGCACTT
GCGTCAGTTGATTGTCTTGCCATTGCTGTGGCATTAGGTTGGAGACGAAA
CAGCACGAGCTGTTGCCTTTGACAGTGCTCATCACCCGCTGCGTGATATG
AGAGTGTTGCAGGTCCCGCACACATGCAGTTTAGAGCATGTATCAACCGC
ATGTCTTGCCGATGCCGCGTGACTAGACCAGGGGTTGGGTTAGCTTTGGG
TTCTTGCCTGCAACAGTGCTCTACACCTACTGCATGCCGCTGCAACCTCC
GCAAGACTAACCCTAATCCTGAACTTACCCTGCCCCTACTCTGATCTTAC
CCTGCCCCTACTCCCTCGTCAGGACCACCTGAGCATGTACGTCTTCTGTA
TGCCCATGCCCAACACGGCGCAGTTCAACGTGCACTACACTGTGCGCAGC
GCAGAGAGCCTGGATGCCTTTCCTGAACAGGATCGCATTCATCTGGGGGA
GCCCCGAGATCGCTGGGAGCTCAAGCTTACCTTCTATGCTTATCCATCGC
CGGTGGTGCTGCTGGAGGAGCCGCCCTGA
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Coding sequence (CDS) from alignment at Contig_63:673345..675023+

>mRNA_10327 ID=mRNA_10327|Name=jgi.p|Trimin1|169329|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=516bp|location=Sequence derived from alignment at Contig_63:673345..675023+ (Tribonema minus UTEX_B_3156 )
ATGGATTGGACATCAGGACCCGATCGCTACTGCGTGTCGGTTGGCGACGA
ACCGTCATGGGGGTGGACACGCGTATTCACCATGCATGCCTTTGCGGTGA
GCAAATACCATCTGCTGGAGCGGTTGGACCCCCCCTCTTACCGAATAGTC
AAGGGTACCCACATCAAGCCCGAGAGAGACTGGAGGTGTTGCTTTGCCTT
CTTTGCATTTGATGGCCCGGTGCCTGGGTCCACCCAGCTCTTTGTGCAGA
TGCGGGGGGAGCCGCATATCCGCAGTAGAGTGGCGCTCACGCATAGTGAG
CGGTGGGAGGACCACCTGAGCATGTACGTCTTCTGTATGCCCATGCCCAA
CACGGCGCAGTTCAACGTGCACTACACTGTGCGCAGCGCAGAGAGCCTGG
ATGCCTTTCCTGAACAGGATCGCATTCATCTGGGGGAGCCCCGAGATCGC
TGGGAGCTCAAGCTTACCTTCTATGCTTATCCATCGCCGGTGGTGCTGCT
GGAGGAGCCGCCCTGA
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