mRNA_10296 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|82315
Unique NamemRNA_10296
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|82315 vs. uniprot
Match: A0A835YQA7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQA7_9STRA)

HSP 1 Score: 183 bits (465), Expect = 3.470e-58
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 2 
Query:   32 MSALLSLLFACYLVSRVRCTCTRPSTCMSCICVMTTVCTSSCSIDTRSNAFLSAASLKLEVVHPSHHGAPPSPSGLFSVPTSDKRTYRSRQRACE 316
            MSALLSLLFACYLVSRVRCTCTRPSTCMSCICVMTTVCTSSCSIDTRSNAFLSAASLKLEVVHPSHHGAPPSPSGLFSVPTSDKRTYRSRQRACE
Sbjct:    1 MSALLSLLFACYLVSRVRCTCTRPSTCMSCICVMTTVCTSSCSIDTRSNAFLSAASLKLEVVHPSHHGAPPSPSGLFSVPTSDKRTYRSRQRACE 95
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|82315 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YQA7_9STRA3.470e-58100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_63contigContig_63:400302..400667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|82315|CE82314_64
Hectar predicted targeting categorysignal peptide
TranscriptId82637
TrackFilteredModels1
ProteinId82315
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|82315gene_10296Tribonema minus UTEX_B_3156 geneContig_63 400302..400667 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10296_1exon_10296_1Tribonema minus UTEX_B_3156 exonContig_63 400302..400667 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10296UTR3_10296Tribonema minus UTEX_B_3156 three_prime_UTRContig_63 400302..400348 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10296CDS_10296Tribonema minus UTEX_B_3156 CDSContig_63 400349..400636 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_10296UTR5_10296Tribonema minus UTEX_B_3156 five_prime_UTRContig_63 400637..400667 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|82315Trimin1|82315|CE82314_64Tribonema minus UTEX_B_3156 polypeptideContig_63 400349..400636 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10296 ID=mRNA_10296|Name=jgi.p|Trimin1|82315|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=366bp|location=Sequence derived from alignment at Contig_63:400302..400667- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCACATGTATATTTGAGTGTATTGTGGTAATGTCAGCGCTGCTCTCTT
TACTTTTTGCATGCTACTTAGTTTCACGTGTGCGGTGCACGTGCACTCGT
CCGTCTACATGTATGTCTTGCATCTGCGTGATGACTACAGTGTGCACATC
ATCATGCTCAATAGATACTCGTTCAAATGCTTTTTTATCTGCAGCGTCCC
TCAAACTTGAAGTTGTCCATCCCTCTCACCATGGTGCACCTCCCAGCCCT
AGCGGTTTATTTAGTGTACCCACATCAGACAAACGGACATATCGTAGTCG
TCAGCGAGCATGTGAGTAACATTACCACCGTGTGCCTCACTGTGGCAGCT
CAACCAGCACAGCAAT
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protein sequence of jgi.p|Trimin1|82315

>Trimin1|82315|CE82314_64 ID=Trimin1|82315|CE82314_64|Name=jgi.p|Trimin1|82315|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=96bp
MSALLSLLFACYLVSRVRCTCTRPSTCMSCICVMTTVCTSSCSIDTRSNA
FLSAASLKLEVVHPSHHGAPPSPSGLFSVPTSDKRTYRSRQRACE*
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mRNA from alignment at Contig_63:400302..400667-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10296 ID=mRNA_10296|Name=jgi.p|Trimin1|82315|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=366bp|location=Sequence derived from alignment at Contig_63:400302..400667- (Tribonema minus UTEX_B_3156 )
CAGCACATGTATATTTGAGTGTATTGTGGTAATGTCAGCGCTGCTCTCTT
TACTTTTTGCATGCTACTTAGTTTCACGTGTGCGGTGCACGTGCACTCGT
CCGTCTACATGTATGTCTTGCATCTGCGTGATGACTACAGTGTGCACATC
ATCATGCTCAATAGATACTCGTTCAAATGCTTTTTTATCTGCAGCGTCCC
TCAAACTTGAAGTTGTCCATCCCTCTCACCATGGTGCACCTCCCAGCCCT
AGCGGTTTATTTAGTGTACCCACATCAGACAAACGGACATATCGTAGTCG
TCAGCGAGCATGTGAGTAACATTACCACCGTGTGCCTCACTGTGGCAGCT
CAACCAGCACAGCAAT
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Coding sequence (CDS) from alignment at Contig_63:400302..400667-

>mRNA_10296 ID=mRNA_10296|Name=jgi.p|Trimin1|82315|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=288bp|location=Sequence derived from alignment at Contig_63:400302..400667- (Tribonema minus UTEX_B_3156 )
ATGTCAGCGCTGCTCTCTTTACTTTTTGCATGCTACTTAGTTTCACGTGT
GCGGTGCACGTGCACTCGTCCGTCTACATGTATGTCTTGCATCTGCGTGA
TGACTACAGTGTGCACATCATCATGCTCAATAGATACTCGTTCAAATGCT
TTTTTATCTGCAGCGTCCCTCAAACTTGAAGTTGTCCATCCCTCTCACCA
TGGTGCACCTCCCAGCCCTAGCGGTTTATTTAGTGTACCCACATCAGACA
AACGGACATATCGTAGTCGTCAGCGAGCATGTGAGTAA
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