mRNA_6459 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|169098
Unique NamemRNA_6459
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|169098 vs. uniprot
Match: A0A836CIB1_9STRA (Methyltransf_20 domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIB1_9STRA)

HSP 1 Score: 600 bits (1548), Expect = 5.800e-215
Identity = 310/361 (85.87%), Postives = 321/361 (88.92%), Query Frame = 1 
Query:    1 MELLGLRFRAVLLLINKLYPAPSGSKAHPTTPALEELKRQVLPYLQLTRITKRLHDKPRGYAGDFLTIQWMYANKPGGRCALGHALDRCSMDEPAALAVRNRRALLQREIEECLRRNPGRKVRVTSLACGPASEVFDVLAQPALADRLELTLVDMDEGALAYVRARLAREFPHRAASVTLVRRNLVHVCAGRATLDLPPQDLMYSIGLIDYFSDRTVTRLMAWIRGALAPRGACLLGNFHTSNPSRGYMDALLDWRLVHRDEADMARIAQAAGYAAVPTYSYEPAGVNMFVSLPANVESEXXXXXXXXXXXXXXXXXXXXXXXXXXAAISSVIDVYTGSAAAAPLEPKTAAASSTSSFYTA 1083
            M+LLGLRFRAVLLLINKLYPAPSGSKA PT PALEELKRQVLPYLQLTRITKRLHDKPRGYAGDFLTIQWMYANKPGGRCALG ALDRCS+DEPAA AVRNRRALLQREIE CLRRNPGRKVRVTSLACGPASEVFDVLAQPA+ADRLELTLVDMD+GALAYVRARLAREFPHRAASVTLVRRNLVHVCAGR  LDLPPQDLMYSIGLIDYFSDRTV RLMAW+R ALAPRGAC+LGNFHTSNPSRGYMDALLDWRLVHRDEADMARIAQAAGYAA PTYSYEPAGVNMFVS+PANVESE                           +I S+IDVYTG+AAAAPLEP+ AA SSTSSFYTA
Sbjct:    1 MDLLGLRFRAVLLLINKLYPAPSGSKARPTNPALEELKRQVLPYLQLTRITKRLHDKPRGYAGDFLTIQWMYANKPGGRCALGQALDRCSVDEPAARAVRNRRALLQREIENCLRRNPGRKVRVTSLACGPASEVFDVLAQPAIADRLELTLVDMDDGALAYVRARLAREFPHRAASVTLVRRNLVHVCAGRDPLDLPPQDLMYSIGLIDYFSDRTVQRLMAWMRSALAPRGACILGNFHTSNPSRGYMDALLDWRLVHRDEADMARIAQAAGYAAAPTYSYEPAGVNMFVSVPANVESEAESEAALASTVHMYTAGAPAVMQAEDVSIPSIIDVYTGAAAAAPLEPEAAAESSTSSFYTA 361
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BLAST of jgi.p|Trimin1|169098 vs. uniprot
Match: A0A7Y0PXG1_9CYAN (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Prochlorococcus TaxID=1218 RepID=A0A7Y0PXG1_9CYAN)

HSP 1 Score: 325 bits (832), Expect = 1.530e-104
Identity = 171/298 (57.38%), Postives = 217/298 (72.82%), Query Frame = 1 
Query:   10 LGLRFRAVLLLINKLYPAPSGSKAHPTTPALEELKRQVLPYLQLTRITKRLHDKPRGYAGDFLTIQWMYANKPGGRCALGHALDRCSMDEPAALAVRNRRALLQREIEECLRRNPGRKVRVTSLACGPASEVFDVLAQPALADRLELTLVDMDEGALAYVRARLAREFPHRAAS--VTLVRRNLVHVCAGRATLDLPPQDLMYSIGLIDYFSDRTVTRLMAWIRGALAPRGACLLGNFHTSNPSRGYMDALLDWRLVHRDEADMARIAQAAGYAAVPTY-SYEPAGVNMFVSLPANVE 894
            L   F AV+  +++ +PA SG++      +L+ L+ ++LPYL LTR  +R++ KPRGYAGDFLTI+WMYA++PGG   LG  LDRC +DEPAA AVRNRR LL+ E+E  LR    R +RVTSLACGPA+EVFD+L +P LA +LELTLVD+D+ AL +V++RLA+    +  S  + L RRNL+H+C GR TLDLPPQ L+YSIGLIDYF DR VTRL  WI   LAP G  +LGNFHTSNP+RG MD LLDWRL+HRDEA M  +A+ AG+    TY  +EPAGVN+F     +VE
Sbjct:  186 LAAAFSAVVQTVHEAFPARSGAEPATECGSLQLLRTELLPYLLLTRSAERMYRKPRGYAGDFLTIEWMYADQPGGAGELGRFLDRCFLDEPAAQAVRNRRGLLKEELETALRLTEERPLRVTSLACGPAAEVFDLLTEPELAMQLELTLVDVDQEALDHVQSRLAQPGVDQYLSRPIRLERRNLLHLCLGRQTLDLPPQHLIYSIGLIDYFDDRIVTRLQRWIHDVLAPGGRSILGNFHTSNPTRGLMDHLLDWRLIHRDEAAMESLAKKAGFVPDQTYLRFEPAGVNLFAISRRSVE 483
[Close]
BLAST of jgi.p|Trimin1|169098 vs. uniprot
Match: A0A076H6C5_9SYNE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Synechococcus sp. KORDI-100 TaxID=1280380 RepID=A0A076H6C5_9SYNE)

HSP 1 Score: 322 bits (826), Expect = 1.020e-103
Identity = 173/289 (59.86%), Postives = 209/289 (72.32%), Query Frame = 1 
Query:   10 LGLRFRAVLLLINKLYPAPSGSKAHPTTPALEELKRQVLPYLQLTRITKRLHDKPRGYAGDFLTIQWMYANKPGGRCALGHALDRCSMDEPAALAVRNRRALLQREIEECLRRNPGRKVRVTSLACGPASEVFDVLAQPA-LADRLELTLVDMDEGALAYVRARLAREFPHRAASVTLVRRNLVHVCAGRATLDLPPQDLMYSIGLIDYFSDRTVTRLMAWIRGALAPRGACLLGNFHTSNPSRGYMDALLDWRLVHRDEADMARIAQAAGYAAVPTYS-YEPAGVNMF 870
            L   F  ++ L   L+P  SG K    TPAL+ L+ ++LPYL LTR  +R++ KPRGYAGDFLTI WMYA++PGG   LG  LDRC +D+PAA AVRNRR LL+ E++  L     R VRVTSLACGPA+EVFD+L Q + LA ++  TLVD+DE AL YVR RL  E     + V L RRNL+H+C GR TL+L PQ L+YSIGLIDYF DR VTRL AWI  +LAP G  +LGNFHTSNP+RG MD LLDWRL+HRDEADM R+AQAAG+A   T   +EPAGVN+F
Sbjct:  186 LAAAFDNLVRLTGSLFPPLSGDKPAAETPALQALRLELLPYLLLTRSAERMYRKPRGYAGDFLTIAWMYADEPGGAGELGSLLDRCFLDQPAAKAVRNRRGLLRGELQRALTLTDQRPVRVTSLACGPAAEVFDILLQDSELAAQVSFTLVDVDEQALQYVRERLIGEGLE--SQVRLERRNLLHLCIGRQTLELEPQHLIYSIGLIDYFDDRIVTRLQAWIHASLAPGGRSILGNFHTSNPTRGLMDHLLDWRLIHRDEADMLRLAQAAGFAQDATQCCFEPAGVNLF 472
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BLAST of jgi.p|Trimin1|169098 vs. uniprot
Match: UPI001FF7F66A (cyclic nucleotide-binding domain-containing protein n=2 Tax=unclassified Synechococcus TaxID=2626047 RepID=UPI001FF7F66A)

HSP 1 Score: 316 bits (809), Expect = 4.160e-101
Identity = 166/286 (58.04%), Postives = 209/286 (73.08%), Query Frame = 1 
Query:   22 FRAVLLLINKLYPAPSGSKAHPTTPALEELKRQVLPYLQLTRITKRLHDKPRGYAGDFLTIQWMYANKPGGRCALGHALDRCSMDEPAALAVRNRRALLQREIEECLRRNPGRKVRVTSLACGPASEVFDVLAQPALADRLELTLVDMDEGALAYVRARLAREF--PHRAASVTLVRRNLVHVCAGRATLDLPPQDLMYSIGLIDYFSDRTVTRLMAWIRGALAPRGACLLGNFHTSNPSRGYMDALLDWRLVHRDEADMARIAQAAGYAAVPT-YSYEPAGVNMF 870
            FR V+L++++++PA SG++      +L+ L+ ++LPYL LTR  +R++ KPRGYAGDFLTI WMYA++PGG   LG  LDRC +DEPAA AVRNRR LL+ E++  L     R +RVTSLACGPA+E+FD+L  P LA +LELTLVD+D+ AL +VRARL RE    H    + L RRNL+H+C GR  L+L PQ LMYSIGLIDYF DR VTRL AWI  +L   G  +LGNFH  N +RG MD LLDWRL+HRD+ADM R+AQAAG+A   T    EPAGVN+F
Sbjct:  190 FRGVVLVVHEVFPALSGAEPALDCASLQILRTELLPYLLLTRSAERMYRKPRGYAGDFLTIDWMYADEPGGAGELGVELDRCFLDEPAAQAVRNRRGLLREELQRSLDLCAERPLRVTSLACGPAAEIFDLLQDPQLASQLELTLVDVDQQALDHVRARLDREQIEQHLPLPIRLERRNLLHLCIGRQRLELKPQHLMYSIGLIDYFDDRIVTRLQAWIHQSLVSGGRSILGNFHPDNSTRGLMDQLLDWRLIHRDQADMERLAQAAGFAPGATEMRLEPAGVNLF 475
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BLAST of jgi.p|Trimin1|169098 vs. uniprot
Match: A0A163ZFC4_9SYNE (Cyclic nucleotide-binding domain protein n=3 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A163ZFC4_9SYNE)

HSP 1 Score: 303 bits (777), Expect = 2.520e-96
Identity = 159/289 (55.02%), Postives = 203/289 (70.24%), Query Frame = 1 
Query:   10 LGLRFRAVLLLINKLYPAPSGSKAHPTTPALEELKRQVLPYLQLTRITKRLHDKPRGYAGDFLTIQWMYANKPGGRCALGHALDRCSMDEPAALAVRNRRALLQREIEECLRRNPGRKVRVTSLACGPASEVFDVLAQPA-LADRLELTLVDMDEGALAYVRARLAREFPHRAASVTLVRRNLVHVCAGRATLDLPPQDLMYSIGLIDYFSDRTVTRLMAWIRGALAPRGACLLGNFHTSNPSRGYMDALLDWRLVHRDEADMARIAQAAGYAAVPTYS-YEPAGVNMF 870
            L   F  ++ L   L+PA SG    P  PAL+ L+ ++LPYL LTR  +R++ KPRGYAGDFLTI WMYA++PGG   LG  LDRC +++PAA AVRNRR LL+ E++  L     R +RVTSLACGPA+E+FD+L + + LAD+++ TLVD+D+ AL YVR RL RE       V L RRNL+H+C GR  LDL PQ L+YSIGLIDYF DR VTRL  WI   L P G  +LGNFH +NP+RG MD LLDWRL+HRD+A M ++A++AG+    T   +E AGVN+F
Sbjct:  186 LAAAFDTLVRLTGSLFPALSGDTPAPDNPALQALRIELLPYLLLTRSAERMYRKPRGYAGDFLTIAWMYADEPGGAGELGTLLDRCFLNQPAAKAVRNRRGLLREELQRALTLTDQRPLRVTSLACGPAAEIFDLLLEDSDLADQVQFTLVDVDQKALEYVRERLVREGLEHV--VRLERRNLLHLCVGRQKLDLEPQHLIYSIGLIDYFDDRIVTRLQTWIHSCLEPGGRSILGNFHINNPTRGLMDHLLDWRLIHRDQAAMVKLAESAGFPVGLTQCRFEDAGVNLF 472
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BLAST of jgi.p|Trimin1|169098 vs. uniprot
Match: A0A2E0KGJ8_9SYNE (Cyclic nucleotide-binding domain-containing protein n=3 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A2E0KGJ8_9SYNE)

HSP 1 Score: 301 bits (772), Expect = 1.340e-95
Identity = 162/285 (56.84%), Postives = 198/285 (69.47%), Query Frame = 1 
Query:   22 FRAVLLLINKLYPAPSGSKAHPTTPALEELKRQVLPYLQLTRITKRLHDKPRGYAGDFLTIQWMYANKPGGRCALGHALDRCSMDEPAALAVRNRRALLQREIEECLRRNPGRKVRVTSLACGPASEVFDVLAQPA-LADRLELTLVDMDEGALAYVRARLAREFPHRAASVTLVRRNLVHVCAGRATLDLPPQDLMYSIGLIDYFSDRTVTRLMAWIRGALAPRGACLLGNFHTSNPSRGYMDALLDWRLVHRDEADMARIAQAAGYAAVPTYS-YEPAGVNMF 870
            F  ++ L   L+P  SG    P T AL+ L+ ++LPYL LTR  +R++ KPRGYAGDFLTI WMYA +PGG    G  LDR  +++PAA AVRNRR LL+ E++  L     R +RVTSLACGPA+EVFD+L Q   LA ++  TLVD+D+ AL +VR RL RE       V L RRNL+H+C GR  L+L PQ L+YSIGLIDYF DR VTRL  WIRG LAP G  +LGNFH SNP+RG MD LLDWRL+HRDE DM R+A+AAG+A   T    E AGVN+F
Sbjct:  190 FDTLVRLTGSLFPPLSGGTPAPDTAALQALRLELLPYLLLTRXAERMYRKPRGYAGDFLTIAWMYAXEPGGAGEXGXLLDRXFLNQPAARAVRNRRGLLREELQRALTLTDQRPLRVTSLACGPAAEVFDILLQDLDLAAQVRFTLVDVDQQALEFVRERLIREGLESV--VRLERRNLLHLCIGRQQLELEPQHLIYSIGLIDYFDDRIVTRLQTWIRGCLAPGGRSILGNFHISNPTRGLMDHLLDWRLIHRDEGDMVRLAEAAGFAPSTTQCRLEEAGVNLF 472
[Close]
BLAST of jgi.p|Trimin1|169098 vs. uniprot
Match: Q3AGP1_SYNSC (PhcB, RSc2735 regulatory protein n=1 Tax=Synechococcus sp. (strain CC9605) TaxID=110662 RepID=Q3AGP1_SYNSC)

HSP 1 Score: 295 bits (754), Expect = 1.670e-95
Identity = 159/281 (56.58%), Postives = 196/281 (69.75%), Query Frame = 1 
Query:   34 LLLINKLYPAPSGSKAHPTTPALEELKRQVLPYLQLTRITKRLHDKPRGYAGDFLTIQWMYANKPGGRCALGHALDRCSMDEPAALAVRNRRALLQREIEECLRRNPGRKVRVTSLACGPASEVFDVLAQPA-LADRLELTLVDMDEGALAYVRARLAREFPHRAASVTLVRRNLVHVCAGRATLDLPPQDLMYSIGLIDYFSDRTVTRLMAWIRGALAPRGACLLGNFHTSNPSRGYMDALLDWRLVHRDEADMARIAQAAGYAAVPTYS-YEPAGVNMF 870
            + L   L+P  SG    P T AL+ L+ ++LPYL LTR  +R++ KPRGYAGDFLTI WMYA++PG    LG  LDRC +++PAA AVRNRR LL+ E++  L     R +RVTSLACGPA+EVFD+L     L  ++ LTLVD+D+ AL +VR RL RE       V L RRNL+H+C GR  L+L PQ L+YSIGLIDYF DR VTRL  W+RG LAP G  +LGNFH SNP+R  MD LLDWRL+HRDE DM R+A+AAG+A   T    E AGVN+F
Sbjct:    1 MCLTGSLFPPLSGGTPAPDTAALQALRLELLPYLLLTRSAERMYRKPRGYAGDFLTIAWMYADEPGRAGELGTLLDRCFLNQPAARAVRNRRGLLREELQRALTLTDQRPLRVTSLACGPAAEVFDILLHNHDLPAQVRLTLVDVDQQALEFVRERLIREGLESV--VRLERRNLLHLCIGRQQLELEPQHLIYSIGLIDYFDDRIVTRLQTWMRGCLAPGGRSILGNFHISNPTRVLMDHLLDWRLIHRDEGDMERLAEAAGFAPGTTQCRLEEAGVNLF 279
[Close]
BLAST of jgi.p|Trimin1|169098 vs. uniprot
Match: A0A847GNI6_9BACT (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Candidatus Anammoximicrobium sp. TaxID=2699742 RepID=A0A847GNI6_9BACT)

HSP 1 Score: 234 bits (597), Expect = 2.060e-69
Identity = 133/286 (46.50%), Postives = 178/286 (62.24%), Query Frame = 1 
Query:   19 RFRAVLLLINKLYPAPSGSKAHPTTPALEELKRQVLPYLQLTRITKRLHDKPRGYAGDFLTIQWMYANKPGGRCALGHALDRCSMDEPAALAVRNRRALLQREIEECLRRNPGRKVRVTSLACGPASEVFDVLAQPALADRLELTLVDMDEGALAYVRAR-LAREFPHRAASVTLVRRNLVHVCAGRATLDLPPQDLMYSIGLIDYFSDRTVTRLMAWIRGALAPRGACLLGNFHTSNPSRGYMDALLDWRLVHRDEADMARIAQAAGYAAVPT-YSYEPAGVNMF 870
            +F    +L+N+     SG   H        ++ Q +PYL LT   +R+  KPRGYAGDFL+I+ +Y N+  G+  LG  +DRC +D   A AVRNRR LL  EI    R  P   VR TSLACGPA EVFDVL +PALA RL  TL+D+DE AL++VR R + R    R   +TL ++NL+++  GR  L+LPPQDL+YS+GLIDYF+D  V +LM +    L P G  +LGNFH  N SR  M+ +LDW+L+HR E +M R+  A+ +    T   +E  GVN+F
Sbjct:  193 QFSRFAVLLNERIGERSGLDEHVREELGSRVRLQFMPYLLLTASAERMFVKPRGYAGDFLSIEEIYENRGQGKGHLGPVIDRCFLDLSGAKAVRNRRGLLVEEIRRTCRGVPEGLVRFTSLACGPAEEVFDVLQEPALASRLHATLIDIDEQALSFVRERAVQRGLRER---LTLEQQNLIYLAVGRHRLELPPQDLVYSVGLIDYFNDAFVLKLMDYAHALLRPGGRLILGNFHPVNSSRAIMEHVLDWKLIHRTEDEMHRLFAASKFGRPCTRLQFEAEGVNLF 475
[Close]
BLAST of jgi.p|Trimin1|169098 vs. uniprot
Match: A0A7W1XY23_9BACT (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7W1XY23_9BACT)

HSP 1 Score: 230 bits (587), Expect = 6.430e-68
Identity = 129/278 (46.40%), Postives = 173/278 (62.23%), Query Frame = 1 
Query:   40 LINKLYPAPSGSKAHPTTPALEELKRQVLPYLQLTRITKRLHDKPRGYAGDFLTIQWMYANKPGGRCALGHALDRCSMDEPAALAVRNRRALLQREIEECLRRNPGRKVRVTSLACGPASEVFDVLAQPALADRLELTLVDMDEGALAYVRARLAREFPHRAASVTLVRRNLVHVCAGRATLDLPPQDLMYSIGLIDYFSDRTVTRLMAWIRGALAPRGACLLGNFHTSNPSRGYMDALLDWRLVHRDEADMARIAQAAGYAAVPT-YSYEPAGVNMF 870
            LIN L  + S   +        EL +++LPYL  +RI +R + KPRGYAGDF+TI+W+Y NKP G+  LG  +D+  +D   A AVRNRR L+  +IE   + +P   + +TSLACGPA EV+D      +  R+   L+D+D+ AL +V     RE     + + L R NLV++  GR  LD+PPQDL+YSIGLIDYFSD  V R + +I G L P G  +LGNFHTSN SR  MD LLDW+L+HRDEADM RI + + +    T   YE   +N+F
Sbjct:  200 LINDLIGSESELSSVRCEQLGRELMKEMLPYLFFSRIAERSYSKPRGYAGDFMTIEWIYQNKPEGQGPLGALMDQAFLDLSCAQAVRNRRGLITEQIERACQLSPEGPIEITSLACGPAREVYDHYQAHGIESRVNSHLIDIDQQALEFVGQW--REEMGLESKIDLQRLNLVYLSLGRGQLDVPPQDLIYSIGLIDYFSDEFVVRFLNYIHGLLRPGGRVVLGNFHTSNRSRALMDHLLDWKLIHRDEADMNRIFRESKFGRDCTEILYEEQKLNLF 475
[Close]
BLAST of jgi.p|Trimin1|169098 vs. uniprot
Match: A0A8A4TNE8_9BACT (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Sulfidibacter corallicola TaxID=2818388 RepID=A0A8A4TNE8_9BACT)

HSP 1 Score: 227 bits (578), Expect = 1.390e-66
Identity = 122/284 (42.96%), Postives = 173/284 (60.92%), Query Frame = 1 
Query:   22 FRAVLLLINKLYPAPSGSKAHPTTPALEELKRQVLPYLQLTRITKRLHDKPRGYAGDFLTIQWMYANKPGGRCALGHALDRCSMDEPAALAVRNRRALLQREIEECLRRNPGRKVRVTSLACGPASEVFDVLAQPALADRLELTLVDMDEGALAYVRARLAREFPHRAASVTLVRRNLVHVCAGRATLDLPPQDLMYSIGLIDYFSDRTVTRLMAWIRGALAPRGACLLGNFHTSNPSRGYMDALLDWRLVHRDEADMARIAQAAGYAA-VPTYSYEPAGVNMF 870
            FR   L+IN+     +    H  T     L+R+ LPY+ LTRI +R++ KPRGYAGDFLTI+ +Y +   G   +G  LDRC +DEP A+AV+NRR LL  EI   +  +      +TS+A GPA+E+FDV A      +L+ TL+D+D  ALA+V  +  +    R   + LV  NLV++  GR  L LPPQDL+YSIGLIDYFSD+ V  L+ ++ G L P G  +LGNFH  N  +  MD +L+W+L+HR E DM R+ +++ +        +E  G+N+F
Sbjct:  195 FRQFSLMINQTLGEEAQINEHVKTEIGRRLQREFLPYMLLTRIGERIYSKPRGYAGDFLTIEMIYRDAEEGVGRIGPLLDRCFLDEPPAIAVKNRRGLLVEEIRSVMTESQDETAHITSMASGPAAEIFDVFAMLPSPGQLQATLIDIDLQALAFVSDKADQRKLKR--QIKLVNGNLVYLATGRQELKLPPQDLVYSIGLIDYFSDKFVISLLDYVHGLLKPGGKVILGNFHPRNTGKALMDHILEWQLIHRTEEDMDRLYRSSAFGTPCSRIRFEDQGINLF 476
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169098 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CIB1_9STRA5.800e-21585.87Methyltransf_20 domain-containing protein n=2 Tax=... [more]
A0A7Y0PXG1_9CYAN1.530e-10457.38Cyclic nucleotide-binding domain-containing protei... [more]
A0A076H6C5_9SYNE1.020e-10359.86Cyclic nucleotide-binding domain-containing protei... [more]
UPI001FF7F66A4.160e-10158.04cyclic nucleotide-binding domain-containing protei... [more]
A0A163ZFC4_9SYNE2.520e-9655.02Cyclic nucleotide-binding domain protein n=3 Tax=u... [more]
A0A2E0KGJ8_9SYNE1.340e-9556.84Cyclic nucleotide-binding domain-containing protei... [more]
Q3AGP1_SYNSC1.670e-9556.58PhcB, RSc2735 regulatory protein n=1 Tax=Synechoco... [more]
A0A847GNI6_9BACT2.060e-6946.50Cyclic nucleotide-binding domain-containing protei... [more]
A0A7W1XY23_9BACT6.430e-6846.40Cyclic nucleotide-binding domain-containing protei... [more]
A0A8A4TNE8_9BACT1.390e-6642.96Cyclic nucleotide-binding domain-containing protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_62contigContig_62:23289..24374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|169098|e_gw1.62.4.1
DescriptionPutative methyltransferase
COG categoryT
Max annot lvl1117|Cyanobacteria
EggNOG OGsCOG0664@1|root,COG0664@2|Bacteria,1GC7M@1117|Cyanobacteria,1H02U@1129|Synechococcus
Evalue1.68e-104
Seed ortholog1280380.KR100_15390
Hectar predicted targeting categoryother localisation
TranscriptId169420
TrackFilteredModels1
ProteinId169098
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169098gene_6459Tribonema minus UTEX_B_3156 geneContig_62 23289..24374 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6459_1exon_6459_1Tribonema minus UTEX_B_3156 exonContig_62 23289..24374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6459CDS_6459Tribonema minus UTEX_B_3156 CDSContig_62 23289..24374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169098Trimin1|169098|e_gw1.62.4.1Tribonema minus UTEX_B_3156 polypeptideContig_62 23289..24374 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6459 ID=mRNA_6459|Name=jgi.p|Trimin1|169098|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1086bp|location=Sequence derived from alignment at Contig_62:23289..24374+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCTGCTCGGCCTGCGCTTCCGCGCTGTGCTGCTGCTCATCAACAA
GCTGTACCCCGCCCCCAGCGGCAGCAAGGCGCACCCCACCACCCCCGCCC
TCGAGGAACTCAAGCGGCAGGTGCTCCCCTACCTGCAGCTGACGCGCATC
ACCAAGCGCCTGCACGACAAGCCGCGCGGCTACGCGGGCGACTTCCTCAC
CATCCAGTGGATGTACGCCAACAAGCCGGGCGGCAGATGCGCCCTGGGCC
ACGCCCTGGACCGCTGCTCCATGGACGAGCCCGCCGCGCTCGCCGTGCGG
AACCGCCGAGCGCTGCTGCAGCGCGAGATCGAGGAGTGCCTGCGCCGCAA
CCCGGGCCGCAAGGTGCGCGTGACGTCCCTCGCTTGCGGGCCTGCGTCTG
AGGTCTTCGACGTGCTCGCACAGCCCGCCCTCGCCGACCGCCTGGAGCTG
ACGCTGGTGGACATGGACGAGGGGGCGCTGGCGTACGTGCGCGCGCGCCT
CGCGCGCGAGTTCCCCCACCGCGCCGCGTCCGTCACGCTCGTGCGCCGCA
ACCTGGTCCACGTGTGCGCGGGGCGCGCCACCCTGGACCTGCCCCCCCAA
GACCTCATGTACTCCATCGGCCTCATCGACTACTTCAGCGACCGCACCGT
GACGCGCCTCATGGCGTGGATCCGCGGCGCCCTCGCGCCGCGCGGCGCGT
GCCTCCTTGGCAACTTCCACACGTCCAACCCGAGCCGCGGCTACATGGAC
GCGCTGCTGGACTGGCGCCTCGTGCACCGCGACGAGGCCGACATGGCGCG
CATCGCTCAGGCGGCGGGGTACGCAGCCGTGCCGACGTACAGTTACGAGC
CCGCGGGCGTCAACATGTTCGTCAGCTTGCCTGCCAATGTCGAGTCGGAG
TCGGAGTCGGAGGCGGCGCTTGCTAGCACGGTGCATATGTACACTGCTGC
TGCGCCGGCTGTGGCGGAGGCAGAGGCTGCAGCAATTTCTAGTGTTATAG
ATGTGTACACTGGTTCAGCTGCTGCGGCACCACTTGAGCCCAAGACCGCT
GCGGCCAGTAGCACCAGCAGCTTTTACACAGCCTAA
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protein sequence of jgi.p|Trimin1|169098

>Trimin1|169098|e_gw1.62.4.1 ID=Trimin1|169098|e_gw1.62.4.1|Name=jgi.p|Trimin1|169098|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=362bp
MELLGLRFRAVLLLINKLYPAPSGSKAHPTTPALEELKRQVLPYLQLTRI
TKRLHDKPRGYAGDFLTIQWMYANKPGGRCALGHALDRCSMDEPAALAVR
NRRALLQREIEECLRRNPGRKVRVTSLACGPASEVFDVLAQPALADRLEL
TLVDMDEGALAYVRARLAREFPHRAASVTLVRRNLVHVCAGRATLDLPPQ
DLMYSIGLIDYFSDRTVTRLMAWIRGALAPRGACLLGNFHTSNPSRGYMD
ALLDWRLVHRDEADMARIAQAAGYAAVPTYSYEPAGVNMFVSLPANVESE
SESEAALASTVHMYTAAAPAVAEAEAAAISSVIDVYTGSAAAAPLEPKTA
AASSTSSFYTA*
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mRNA from alignment at Contig_62:23289..24374+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6459 ID=mRNA_6459|Name=jgi.p|Trimin1|169098|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1086bp|location=Sequence derived from alignment at Contig_62:23289..24374+ (Tribonema minus UTEX_B_3156 )
ATGGAGCTGCTCGGCCTGCGCTTCCGCGCTGTGCTGCTGCTCATCAACAA
GCTGTACCCCGCCCCCAGCGGCAGCAAGGCGCACCCCACCACCCCCGCCC
TCGAGGAACTCAAGCGGCAGGTGCTCCCCTACCTGCAGCTGACGCGCATC
ACCAAGCGCCTGCACGACAAGCCGCGCGGCTACGCGGGCGACTTCCTCAC
CATCCAGTGGATGTACGCCAACAAGCCGGGCGGCAGATGCGCCCTGGGCC
ACGCCCTGGACCGCTGCTCCATGGACGAGCCCGCCGCGCTCGCCGTGCGG
AACCGCCGAGCGCTGCTGCAGCGCGAGATCGAGGAGTGCCTGCGCCGCAA
CCCGGGCCGCAAGGTGCGCGTGACGTCCCTCGCTTGCGGGCCTGCGTCTG
AGGTCTTCGACGTGCTCGCACAGCCCGCCCTCGCCGACCGCCTGGAGCTG
ACGCTGGTGGACATGGACGAGGGGGCGCTGGCGTACGTGCGCGCGCGCCT
CGCGCGCGAGTTCCCCCACCGCGCCGCGTCCGTCACGCTCGTGCGCCGCA
ACCTGGTCCACGTGTGCGCGGGGCGCGCCACCCTGGACCTGCCCCCCCAA
GACCTCATGTACTCCATCGGCCTCATCGACTACTTCAGCGACCGCACCGT
GACGCGCCTCATGGCGTGGATCCGCGGCGCCCTCGCGCCGCGCGGCGCGT
GCCTCCTTGGCAACTTCCACACGTCCAACCCGAGCCGCGGCTACATGGAC
GCGCTGCTGGACTGGCGCCTCGTGCACCGCGACGAGGCCGACATGGCGCG
CATCGCTCAGGCGGCGGGGTACGCAGCCGTGCCGACGTACAGTTACGAGC
CCGCGGGCGTCAACATGTTCGTCAGCTTGCCTGCCAATGTCGAGTCGGAG
TCGGAGTCGGAGGCGGCGCTTGCTAGCACGGTGCATATGTACACTGCTGC
TGCGCCGGCTGTGGCGGAGGCAGAGGCTGCAGCAATTTCTAGTGTTATAG
ATGTGTACACTGGTTCAGCTGCTGCGGCACCACTTGAGCCCAAGACCGCT
GCGGCCAGTAGCACCAGCAGCTTTTACACAGCCTAA
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Coding sequence (CDS) from alignment at Contig_62:23289..24374+

>mRNA_6459 ID=mRNA_6459|Name=jgi.p|Trimin1|169098|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1086bp|location=Sequence derived from alignment at Contig_62:23289..24374+ (Tribonema minus UTEX_B_3156 )
ATGGAGCTGCTCGGCCTGCGCTTCCGCGCTGTGCTGCTGCTCATCAACAA
GCTGTACCCCGCCCCCAGCGGCAGCAAGGCGCACCCCACCACCCCCGCCC
TCGAGGAACTCAAGCGGCAGGTGCTCCCCTACCTGCAGCTGACGCGCATC
ACCAAGCGCCTGCACGACAAGCCGCGCGGCTACGCGGGCGACTTCCTCAC
CATCCAGTGGATGTACGCCAACAAGCCGGGCGGCAGATGCGCCCTGGGCC
ACGCCCTGGACCGCTGCTCCATGGACGAGCCCGCCGCGCTCGCCGTGCGG
AACCGCCGAGCGCTGCTGCAGCGCGAGATCGAGGAGTGCCTGCGCCGCAA
CCCGGGCCGCAAGGTGCGCGTGACGTCCCTCGCTTGCGGGCCTGCGTCTG
AGGTCTTCGACGTGCTCGCACAGCCCGCCCTCGCCGACCGCCTGGAGCTG
ACGCTGGTGGACATGGACGAGGGGGCGCTGGCGTACGTGCGCGCGCGCCT
CGCGCGCGAGTTCCCCCACCGCGCCGCGTCCGTCACGCTCGTGCGCCGCA
ACCTGGTCCACGTGTGCGCGGGGCGCGCCACCCTGGACCTGCCCCCCCAA
GACCTCATGTACTCCATCGGCCTCATCGACTACTTCAGCGACCGCACCGT
GACGCGCCTCATGGCGTGGATCCGCGGCGCCCTCGCGCCGCGCGGCGCGT
GCCTCCTTGGCAACTTCCACACGTCCAACCCGAGCCGCGGCTACATGGAC
GCGCTGCTGGACTGGCGCCTCGTGCACCGCGACGAGGCCGACATGGCGCG
CATCGCTCAGGCGGCGGGGTACGCAGCCGTGCCGACGTACAGTTACGAGC
CCGCGGGCGTCAACATGTTCGTCAGCTTGCCTGCCAATGTCGAGTCGGAG
TCGGAGTCGGAGGCGGCGCTTGCTAGCACGGTGCATATGTACACTGCTGC
TGCGCCGGCTGTGGCGGAGGCAGAGGCTGCAGCAATTTCTAGTGTTATAG
ATGTGTACACTGGTTCAGCTGCTGCGGCACCACTTGAGCCCAAGACCGCT
GCGGCCAGTAGCACCAGCAGCTTTTACACAGCCTAA
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