mRNA_6505 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|142965 vs. uniprot
Match: A0A836CAQ8_9STRA (Pyr_redox_2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAQ8_9STRA) HSP 1 Score: 177 bits (448), Expect = 3.790e-56 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1
Query: 1 ANKLRDLSQSAFPDVPEDGYDLVVLGSGPGGEAIATRAAQLSARVAVVEIKRAFGGPTGLTSKAVREATKQIVQAVDQVGGDRRRQIRRLWR 276
ANKLRDLSQSAFPDVPEDGYDLVVLGSGPGGEAIATRAAQLSARVAVVEIKRAFGGPTGLTSKAVREATKQIVQAVDQVGGDRRRQIRRLWR
Sbjct: 1 ANKLRDLSQSAFPDVPEDGYDLVVLGSGPGGEAIATRAAQLSARVAVVEIKRAFGGPTGLTSKAVREATKQIVQAVDQVGGDRRRQIRRLWR 92
BLAST of jgi.p|Trimin1|142965 vs. uniprot
Match: W7T4Z3_9STRA (Soluble pyridine nucleotide transhydrogenase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T4Z3_9STRA) HSP 1 Score: 122 bits (306), Expect = 7.580e-33 Identity = 61/91 (67.03%), Postives = 76/91 (83.52%), Query Frame = 1
Query: 7 KLRDLSQSAFPDVPEDG-YDLVVLGSGPGGEAIATRAAQLSARVAVVEIKRAFGGPTGLTSKAVREATKQIVQAVDQVGGDRRRQIRRLWR 276
+L DLSQ+AFP+ +D YDL+VLGSGP GE +AAQL +VA++EIK+AFGGPTGLTSKAVREA K+I++ VDQVGGDR +QIRRLW+
Sbjct: 83 RLPDLSQTAFPEKEDDTPYDLIVLGSGPAGETAGCKAAQLGQKVAIIEIKKAFGGPTGLTSKAVREAAKRILKTVDQVGGDRMKQIRRLWK 173
BLAST of jgi.p|Trimin1|142965 vs. uniprot
Match: A0A6H5L0D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D3_9PHAE) HSP 1 Score: 127 bits (318), Expect = 3.800e-32 Identity = 65/89 (73.03%), Postives = 74/89 (83.15%), Query Frame = 1
Query: 10 LRDLSQSAFPDVPEDGYDLVVLGSGPGGEAIATRAAQLSARVAVVEIKRAFGGPTGLTSKAVREATKQIVQAVDQVGGDRRRQIRRLWR 276
L DL+Q FP +P+ YDLVVLGSGPGGEA A +AA+L A VAVVEIK++FGGPTGLTSKAVREA KQI QAV VGGDRRRQ RR+W+
Sbjct: 52 LPDLAQQEFPPLPDKPYDLVVLGSGPGGEAAAVQAARLGASVAVVEIKKSFGGPTGLTSKAVREAAKQINQAVTNVGGDRRRQTRRMWK 140
BLAST of jgi.p|Trimin1|142965 vs. uniprot
Match: K8YWP5_NANGC (Soluble pyridine nucleotide transhydrogenase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YWP5_NANGC) HSP 1 Score: 122 bits (306), Expect = 2.970e-31 Identity = 61/91 (67.03%), Postives = 76/91 (83.52%), Query Frame = 1
Query: 7 KLRDLSQSAFPDVPEDG-YDLVVLGSGPGGEAIATRAAQLSARVAVVEIKRAFGGPTGLTSKAVREATKQIVQAVDQVGGDRRRQIRRLWR 276
+L DLSQ+AFP+ +D YDL+VLGSGP GE +AAQL +VA++EIK+AFGGPTGLTSKAVREA K+I++ VDQVGGDR +QIRRLW+
Sbjct: 64 RLPDLSQTAFPEKEDDTPYDLIVLGSGPAGETAGCKAAQLGQKVAIIEIKKAFGGPTGLTSKAVREAAKRILKTVDQVGGDRMKQIRRLWK 154
BLAST of jgi.p|Trimin1|142965 vs. uniprot
Match: A0A4D9CSA5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSA5_9STRA) HSP 1 Score: 122 bits (306), Expect = 1.900e-30 Identity = 61/91 (67.03%), Postives = 76/91 (83.52%), Query Frame = 1
Query: 7 KLRDLSQSAFPDVPEDG-YDLVVLGSGPGGEAIATRAAQLSARVAVVEIKRAFGGPTGLTSKAVREATKQIVQAVDQVGGDRRRQIRRLWR 276
+L DLSQ+AFP+ +D YDL+VLGSGP GE +AAQL +VA++EIK+AFGGPTGLTSKAVREA K+I++ VDQVGGDR +QIRRLW+
Sbjct: 83 RLPDLSQTAFPEKEDDTPYDLIVLGSGPAGETAGCKAAQLGQKVAIIEIKKAFGGPTGLTSKAVREAAKRILKTVDQVGGDRMKQIRRLWK 173
BLAST of jgi.p|Trimin1|142965 vs. uniprot
Match: A0A7S2Y1R6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1R6_9STRA) HSP 1 Score: 118 bits (295), Expect = 4.930e-29 Identity = 61/91 (67.03%), Postives = 75/91 (82.42%), Query Frame = 1
Query: 4 NKLRDLSQSAFPDVPEDGYDLVVLGSGPGGEAIATRAAQLSARVAVVEIKRAFGGPTGLTSKAVREATKQIVQAVDQVGGDRRRQIRRLWR 276
+ L DLSQ++FP+ E YDL+V+G GPGGEA A AA+L A VA++E K +FGGPTGLTSKAVREATK+I +A+DQVGGDRRRQ+R LWR
Sbjct: 42 SNLPDLSQASFPERYEP-YDLLVIGCGPGGEAAAVNAAKLGASVALIEKKSSFGGPTGLTSKAVREATKRICKAIDQVGGDRRRQVRGLWR 131
BLAST of jgi.p|Trimin1|142965 vs. uniprot
Match: A0A7R9U251_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U251_9STRA) HSP 1 Score: 117 bits (294), Expect = 4.980e-29 Identity = 62/92 (67.39%), Postives = 75/92 (81.52%), Query Frame = 1
Query: 7 KLRDLSQSAFPDVPEDG--YDLVVLGSGPGGEAIATRAAQLSARVAVVEIKRAFGGPTGLTSKAVREATKQIVQAVDQVGGDRRRQIRRLWR 276
+L DLSQ FP VP D +DLVV+GSGPGGEA A RAA L A+VAVVE K AFGGPTGLTSKAVREA ++I +AV+Q+GGD+ +QIR+LW+
Sbjct: 72 RLPDLSQKDFPPVPPDDEPFDLVVVGSGPGGEAAAARAAALGAKVAVVERKAAFGGPTGLTSKAVREAAERIAKAVEQLGGDKVKQIRKLWK 163
BLAST of jgi.p|Trimin1|142965 vs. uniprot
Match: A0A7S1NVB4_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NVB4_9EUGL) HSP 1 Score: 102 bits (254), Expect = 3.120e-24 Identity = 53/86 (61.63%), Postives = 65/86 (75.58%), Query Frame = 1
Query: 16 DLSQSAFPDVPEDGYDLVVLGSGPGGEAIATRAAQLSARVAVVEIKRAFGGPTGLTSKAVREATKQIVQAVDQVGGDRRRQIRRLW 273
DL+Q AFP E YDLVV+G+GPGGEA A A++ ARVA++E +RAFGGPTGLTSKAVREA KQI D +GG+RR Q++ W
Sbjct: 174 DLNQYAFPKA-EGEYDLVVVGAGPGGEATAVAASRFGARVAIIESRRAFGGPTGLTSKAVREAAKQISATCDALGGNRRLQMKMFW 258
BLAST of jgi.p|Trimin1|142965 vs. uniprot
Match: A0A6U8N6N8_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6U8N6N8_9EUGL) HSP 1 Score: 102 bits (254), Expect = 2.190e-23 Identity = 53/86 (61.63%), Postives = 65/86 (75.58%), Query Frame = 1
Query: 16 DLSQSAFPDVPEDGYDLVVLGSGPGGEAIATRAAQLSARVAVVEIKRAFGGPTGLTSKAVREATKQIVQAVDQVGGDRRRQIRRLW 273
DL+Q AFP E YDLVV+G+GPGGEA A A++ ARVA++E +RAFGGPTGLTSKAVREA KQI D +GG+RR Q++ W
Sbjct: 174 DLNQYAFPKA-EGEYDLVVVGAGPGGEATAVAASRFGARVAIIESRRAFGGPTGLTSKAVREAAKQISATCDALGGNRRLQMKMFW 258
BLAST of jgi.p|Trimin1|142965 vs. uniprot
Match: A0A7S1TRI9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRI9_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 4.350e-15 Identity = 41/55 (74.55%), Postives = 44/55 (80.00%), Query Frame = 1
Query: 7 KLRDLSQSAFPDVPEDG--YDLVVLGSGPGGEAIATRAAQLSARVAVVEIKRAFG 165
+L DLSQ FP VP D YDLVV+GSGPGGEA ATRAAQL ARVAVV+ KRAFG
Sbjct: 73 RLPDLSQKDFPPVPPDDEPYDLVVIGSGPGGEAAATRAAQLGARVAVVDRKRAFG 127 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|142965 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6505 ID=mRNA_6505|Name=jgi.p|Trimin1|142965|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=276bp|location=Sequence derived from alignment at Contig_62:327839..328775+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCCAATAAGCTCAGGGATCTGTCTCAGTCAGCTTTTCCTGATGTCCCAGAback to top protein sequence of jgi.p|Trimin1|142965 >Trimin1|142965|gw1.62.122.1 ID=Trimin1|142965|gw1.62.122.1|Name=jgi.p|Trimin1|142965|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=92bp ANKLRDLSQSAFPDVPEDGYDLVVLGSGPGGEAIATRAAQLSARVAVVEIback to top mRNA from alignment at Contig_62:327839..328775+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6505 ID=mRNA_6505|Name=jgi.p|Trimin1|142965|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=937bp|location=Sequence derived from alignment at Contig_62:327839..328775+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_62:327839..328775+ >mRNA_6505 ID=mRNA_6505|Name=jgi.p|Trimin1|142965|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=276bp|location=Sequence derived from alignment at Contig_62:327839..328775+ (Tribonema minus UTEX_B_3156 )back to top |