Trimin1|350383|estExt_Genemark1.C_Ctg_610080 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|350383
Unique Name	Trimin1\|350383\|estExt_Genemark1.C_Ctg_610080
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	1215

Homology

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BLAST of jgi.p|Trimin1|350383 vs. uniprot
Match: A0A835YNX3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNX3_9STRA)

HSP 1 Score: 1666 bits (4315), Expect = 0.000e+0
Identity = 1214/1214 (100.00%), Postives = 1214/1214 (100.00%), Query Frame = 0

Query:    1 MPITGITAQLVQDIIKGYGQELDGEGVYDSWSLSSSSAAPETAIVSGASVPPWQLPLSSAAPASAHDSPRVLQGGGSSSGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTKXXXXXXXXXXXXXXXXXXXXXXXXLSPVTAPEGDGAPAXXXXXXXXXPLPSAASRQATDTAMPPAEVQQLTSGHAGEAESHNRGACATSPVAAGVLSAAAAHDGEEGGEGEHDVDLVSPPSLRMAHGAFPQLLVIMNRCGHETTNPMRNSRQRNQKLMGPGRGRGDARASRRARRLLLSRAGGDRVGMPXXXXXXXXXXXXXXXXXXXXXXDPAALLRELELLRCQNAALKQAAALADAAVAARSAQSGFLQQHRAQRPWERRPPGGDGQXXXXXXXXXXXXXXXXXXXDEGSGGREDGYVKLLTCWRREVVKLLVQRGAAEEGAAKEAAEAKRALTQQRQARGAADCSDLEQQMHRHTHSTAALRAMVEDMAVTALPSDDSYHDKQAAVAQALARLQGFAQRLAAAAGRVRLAQAAQQRSEVQLRNSRAALEADRRVWQQERQRRELAALAKTRLLSGSPSRPARENQGEGSTDGGGRGGKRRRTREGGMRGWAGVAIRGPGGDGDGGVDVTWGEFLLCFIPGGGTGAGETADSLPTRRARARTSTSSTTSIATQAAPAQHGDPLAGDLFQLQLQLPENWTACRLCRAKAEDTGGSGGGGDGSAVVGAVVRCTHGASAQLDALSVVELRREVRRLTAERTFLMEQIRDDGKQLAARTTTVHTQYRHELKLLRCELDTAEAEAERAXXXXXXXQHDAAAARQELSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEARERHARLEAEHALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAGTGKTNASKLCIPLATQEDAKRTRETLEQRLLERERELSGVRRERNALLAALRDHQRGSSGKGRSAAASDNNLSLRDAAAXXXXXXXXXAKVSPSSAPAAAGDARGGXXXXXXXXXXXXXXXXXXXXXXAARVASPPRAVTATEVAAGPQTTARVALQSAAAAGLSAVTAPRQQRAALSSPPAQHTRKGTQPPASQPLEPGHSDGGAGAPAVAVTAGGGGAHQVPSVTGGNVGAQGGXXXGPAPSVDPQLLRRIEGMVERTRHMLSDNSDSDAEQ 1214
            MPITGITAQLVQDIIKGYGQELDGEGVYDSWSLSSSSAAPETAIVSGASVPPWQLPLSSAAPASAHDSPRVLQGGGSSSGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTKXXXXXXXXXXXXXXXXXXXXXXXXLSPVTAPEGDGAPAXXXXXXXXXPLPSAASRQATDTAMPPAEVQQLTSGHAGEAESHNRGACATSPVAAGVLSAAAAHDGEEGGEGEHDVDLVSPPSLRMAHGAFPQLLVIMNRCGHETTNPMRNSRQRNQKLMGPGRGRGDARASRRARRLLLSRAGGDRVGMPXXXXXXXXXXXXXXXXXXXXXXDPAALLRELELLRCQNAALKQAAALADAAVAARSAQSGFLQQHRAQRPWERRPPGGDGQXXXXXXXXXXXXXXXXXXXDEGSGGREDGYVKLLTCWRREVVKLLVQRGAAEEGAAKEAAEAKRALTQQRQARGAADCSDLEQQMHRHTHSTAALRAMVEDMAVTALPSDDSYHDKQAAVAQALARLQGFAQRLAAAAGRVRLAQAAQQRSEVQLRNSRAALEADRRVWQQERQRRELAALAKTRLLSGSPSRPARENQGEGSTDGGGRGGKRRRTREGGMRGWAGVAIRGPGGDGDGGVDVTWGEFLLCFIPGGGTGAGETADSLPTRRARARTSTSSTTSIATQAAPAQHGDPLAGDLFQLQLQLPENWTACRLCRAKAEDTGGSGGGGDGSAVVGAVVRCTHGASAQLDALSVVELRREVRRLTAERTFLMEQIRDDGKQLAARTTTVHTQYRHELKLLRCELDTAEAEAERAXXXXXXXQHDAAAARQELSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEARERHARLEAEHALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAGTGKTNASKLCIPLATQEDAKRTRETLEQRLLERERELSGVRRERNALLAALRDHQRGSSGKGRSAAASDNNLSLRDAAAXXXXXXXXXAKVSPSSAPAAAGDARGGXXXXXXXXXXXXXXXXXXXXXXAARVASPPRAVTATEVAAGPQTTARVALQSAAAAGLSAVTAPRQQRAALSSPPAQHTRKGTQPPASQPLEPGHSDGGAGAPAVAVTAGGGGAHQVPSVTGGNVGAQGGXXXGPAPSVDPQLLRRIEGMVERTRHMLSDNSDSDAEQ
Sbjct:    1 MPITGITAQLVQDIIKGYGQELDGEGVYDSWSLSSSSAAPETAIVSGASVPPWQLPLSSAAPASAHDSPRVLQGGGSSSGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTKXXXXXXXXXXXXXXXXXXXXXXXXLSPVTAPEGDGAPAXXXXXXXXXPLPSAASRQATDTAMPPAEVQQLTSGHAGEAESHNRGACATSPVAAGVLSAAAAHDGEEGGEGEHDVDLVSPPSLRMAHGAFPQLLVIMNRCGHETTNPMRNSRQRNQKLMGPGRGRGDARASRRARRLLLSRAGGDRVGMPXXXXXXXXXXXXXXXXXXXXXXDPAALLRELELLRCQNAALKQAAALADAAVAARSAQSGFLQQHRAQRPWERRPPGGDGQXXXXXXXXXXXXXXXXXXXDEGSGGREDGYVKLLTCWRREVVKLLVQRGAAEEGAAKEAAEAKRALTQQRQARGAADCSDLEQQMHRHTHSTAALRAMVEDMAVTALPSDDSYHDKQAAVAQALARLQGFAQRLAAAAGRVRLAQAAQQRSEVQLRNSRAALEADRRVWQQERQRRELAALAKTRLLSGSPSRPARENQGEGSTDGGGRGGKRRRTREGGMRGWAGVAIRGPGGDGDGGVDVTWGEFLLCFIPGGGTGAGETADSLPTRRARARTSTSSTTSIATQAAPAQHGDPLAGDLFQLQLQLPENWTACRLCRAKAEDTGGSGGGGDGSAVVGAVVRCTHGASAQLDALSVVELRREVRRLTAERTFLMEQIRDDGKQLAARTTTVHTQYRHELKLLRCELDTAEAEAERAXXXXXXXQHDAAAARQELSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEARERHARLEAEHALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAGTGKTNASKLCIPLATQEDAKRTRETLEQRLLERERELSGVRRERNALLAALRDHQRGSSGKGRSAAASDNNLSLRDAAAXXXXXXXXXAKVSPSSAPAAAGDARGGXXXXXXXXXXXXXXXXXXXXXXAARVASPPRAVTATEVAAGPQTTARVALQSAAAAGLSAVTAPRQQRAALSSPPAQHTRKGTQPPASQPLEPGHSDGGAGAPAVAVTAGGGGAHQVPSVTGGNVGAQGGXXXGPAPSVDPQLLRRIEGMVERTRHMLSDNSDSDAEQ 1214

[Close]

BLAST of jgi.p|Trimin1|350383 vs. uniprot
Match: D8LAY5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY5_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 6.050e-9
Identity = 187/761 (24.57%), Postives = 253/761 (33.25%), Query Frame = 0

Query:  431 KLLTCWRREVVKLLVQRGAAEEGAAKEAAEAKRALTQQRQARGAADCSD-------LEQQMHRHTHSTAALRAMVE------------------DMAVTALP---------SDDSYHDKQAAVAQALARLQGFAQRLAAAAGRVRLAQAAQQRSEVQLRNSRAALEADRRVWQQERQRRELAALAKTR--------------------------------------------------------------------------LLSG-SPSRPARENQGEGSTDGGGRGGKRRRTREGGMRGWAGVA----------------------IRGPGGD-----GDGGV---------------------DVTWGEFLLCFIPGGGT--------------GAGETADSLPTRRARARTSTSSTTSIATQAAPAQHGDPLAGDLFQLQLQLPENWTACRLCRAKAEDTGGSGGGGDGSAVVGAVVRCTHGASAQLDALSVVELRREVRRLTAERTFLMEQIRDDGKQLAARTTTVHTQYRHELKLLRCELDTAEAEAERAXXXXXXXQHDAAAARQELSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEARERHARLEAEHALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAGTGKTNASKLC-------IPLATQEDAKRTRETLEQRLLERERELSGVRRERNALLAALRDHQRGSSGKGRSAAASDNNLS 1013
            +LL  WR EV+KLL+QRG   E AA+E+ EA+R + + R+AR  A+          L  +           RA  E                   +AV  L          + +   +++A +A+ +A+L+ F++RL+ A GRV++ +   +  E++LRNSRAAL ADRRVW  ER+ RELAAL++                                                                            LL G  P   A         D  G G  R R     +R   GV+                      +  P  D     GDG                       DVTWGEFLL F+P  G               G        P   A  R +             A   D  A     LQ+ +P +WTA           GG GG G                   L ALSV +LRREV RL  ER FL+  +R+DG+    R   VH QYRHE++ LR +    E   +         Q       QE+                                         +ARER +RLEAEH+L                                                    GK++  +         I  + Q +A   +E LE+R+   E +L+  RRERNALLAALRD Q      GR  + SD  LS
Sbjct:  771 RLLAAWRAEVLKLLLQRGVDAEVAAEESREARREVVEAREARARAETEAKSLTQRALAAEAEAELSGIKLTRAFEELREERTGRCAGEASSAGYSVAVRDLHEWVQGFLGRASEGVFEREALLARGVAKLEAFSERLSQAHGRVQVLETLLRHKEIRLRNSRAALAADRRVWLLERRDRELAALSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQPPLLEGLRPECEAVMRALFCRVDRLGTGAVRARRLLDVLRSDCGVSEVMEAAVGKSRWRAALDSMEATLCHPVADSCTTNGDGXXXXXXXXXXXXXXXXTRCSSERDVTWGEFLLFFLPPAGNADDAYNAGLISRFPGGSGCRGGFPDEHASVRDAGXXXXXXXXXXFGAVSEDAAA----MLQMVVPTHWTA----------GGGQGGAG-------------------LAALSVGQLRREVLRLAKERAFLLALVREDGRLGKRRAEAVHDQYRHEMRALRSKKGELERLVQEEASRTEEEQDRGRVVEQEVCSLREELKKAEQEWKERVDAAVQEKESALSESSREASQSATKARERISRLEAEHSLALRE-----------------------------------------------NGKSSVRQRALERELARIKSSMQAEATLEKEALEERVRTGELKLATARRERNALLAALRDLQ------GRRRSGSDRPLS 1445

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350383 vs. uniprot

BLAST of jgi.p|Trimin1|350383 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YNX3_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D8LAY5_ECTSI	6.050e-9	24.57	Hypothetical leucine rich repeat protein n=1 Tax=E...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 866..893
None	No IPR available	COILS	Coil	Coil	coord: 755..775
None	No IPR available	COILS	Coil	Coil	coord: 956..983
None	No IPR available	COILS	Coil	Coil	coord: 791..850
None	No IPR available	COILS	Coil	Coil	coord: 897..935
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..218
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 579..623
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1192..1214
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 659..686
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 988..1054
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 668..686
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 380..421
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1110..1214
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1111..1136

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_61	contig	Contig_61:730496..740078 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350383	mRNA_8749	Tribonema minus UTEX_B_3156	mRNA	Contig_61 730496..740078 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|350383|estExt_Genemark1.C_Ctg_610080 ID=Trimin1|350383|estExt_Genemark1.C_Ctg_610080|Name=jgi.p|Trimin1|350383|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=1215bp
MPITGITAQLVQDIIKGYGQELDGEGVYDSWSLSSSSAAPETAIVSGASV
PPWQLPLSSAAPASAHDSPRVLQGGGSSSGSALCINITVNSGPGPGATTA
DAAAAQSTAAAVAAAAADAAPPLPRPGTKPRASPMPAAAEPAAATAAAAA
AAALSPVTAPEGDGAPAAPTGAAAAAPLPSAASRQATDTAMPPAEVQQLT
SGHAGEAESHNRGACATSPVAAGVLSAAAAHDGEEGGEGEHDVDLVSPPS
LRMAHGAFPQLLVIMNRCGHETTNPMRNSRQRNQKLMGPGRGRGDARASR
RARRLLLSRAGGDRVGMPGGGSTGMPGGGSTGMPGGGAVGDPAALLRELE
LLRCQNAALKQAAALADAAVAARSAQSGFLQQHRAQRPWERRPPGGDGQG
RGLAGGGEGGGGGGVGVGDEGSGGREDGYVKLLTCWRREVVKLLVQRGAA
EEGAAKEAAEAKRALTQQRQARGAADCSDLEQQMHRHTHSTAALRAMVED
MAVTALPSDDSYHDKQAAVAQALARLQGFAQRLAAAAGRVRLAQAAQQRS
EVQLRNSRAALEADRRVWQQERQRRELAALAKTRLLSGSPSRPARENQGE
GSTDGGGRGGKRRRTREGGMRGWAGVAIRGPGGDGDGGVDVTWGEFLLCF
IPGGGTGAGETADSLPTRRARARTSTSSTTSIATQAAPAQHGDPLAGDLF
QLQLQLPENWTACRLCRAKAEDTGGSGGGGDGSAVVGAVVRCTHGASAQL
DALSVVELRREVRRLTAERTFLMEQIRDDGKQLAARTTTVHTQYRHELKL
LRCELDTAEAEAERAAAAAAAAQHDAAAARQELSAAAAAAARALSEARAR
ETLLSDEAAAAAAAAAAERERAAGEARERHARLEAEHALLRREHGKAAVA
QRALEREVARVKQALQEVARVKQALQREVARVKQALQFAGTGKTNASKLC
IPLATQEDAKRTRETLEQRLLERERELSGVRRERNALLAALRDHQRGSSG
KGRSAAASDNNLSLRDAAAGKGRGAAAGAKVSPSSAPAAAGDARGGGEGR
STTASAALSLSNAAAAATAARVASPPRAVTATEVAAGPQTTARVALQSAA
AAGLSAVTAPRQQRAALSSPPAQHTRKGTQPPASQPLEPGHSDGGAGAPA
VAVTAGGGGAHQVPSVTGGNVGAQGGGGGGPAPSVDPQLLRRIEGMVERT
RHMLSDNSDSDAEQ*