mRNA_2098 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158553
Unique NamemRNA_2098
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|158553 vs. uniprot
Match: A0A836CMJ1_9STRA (C2 domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMJ1_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.450e-39
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 1 
Query:    1 MFASGSDPFLVLRCNGAARRTATQRSTLQPVFDEHFDIDVTDPAAELVVECWDEDSFGSDFIGVATVHLR 210
            MFASGSDPFLVLRCNGA RRTAT RS LQPVFDEHFD D+TDPAA+LVVECWDE+SFGSDFIGVATVHLR
Sbjct:    1 MFASGSDPFLVLRCNGAVRRTATVRSLLQPVFDEHFDTDMTDPAAQLVVECWDENSFGSDFIGVATVHLR 70
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BLAST of jgi.p|Trimin1|158553 vs. uniprot
Match: F0Y125_AURAN (C2 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y125_AURAN)

HSP 1 Score: 58.9 bits (141), Expect = 7.730e-10
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:   16 SDPFLVLRCNGAARRTATQRSTLQPVFDEHFDIDVTDPAAELVVECWDEDSFGSD-FIGVATVHL 207
            SDP++ + CNG   RT  +R TL P ++E F++DV+DPA  L +  WD D   +D F+G   V L
Sbjct:   19 SDPYVRVECNGRTFRTRVKRQTLNPEYNETFEVDVSDPAEVLRISLWDWDRLSADDFLGDVLVQL 83
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BLAST of jgi.p|Trimin1|158553 vs. uniprot
Match: A0A7S0W343_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W343_9CRYP)

HSP 1 Score: 53.1 bits (126), Expect = 2.040e-6
Identity = 24/57 (42.11%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:   19 DPFLVLRCNGAARRTATQRSTLQPVFDEHFDIDVTDPAAELVVECWDEDSFGSDFIG 189
            DPF+ +  NG   ++A QR+TL+PV++E    +++D +  LVVE +D D  G DF+G
Sbjct:  370 DPFVRMEINGQQWQSAVQRNTLEPVWEEEVQFNISDKSEHLVVELYDWDLSGEDFLG 426
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BLAST of jgi.p|Trimin1|158553 vs. uniprot
Match: A0A7S4EDA4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDA4_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.060e-6
Identity = 25/58 (43.10%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:   16 SDPFLVLRCNGAARRTATQRSTLQPVFDEHFDIDVTDPAAELVVECWDEDSFGSDFIG 189
            SDPF+V+RC+GA+ ++      L PVFDE   + V D  A + +E  D+D  GSD +G
Sbjct:  200 SDPFVVVRCDGASAQSRVVSKNLHPVFDELLSLRVEDGTAPISIEVRDKDMVGSDLLG 257
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BLAST of jgi.p|Trimin1|158553 vs. uniprot
Match: A0A2P6NXT5_9EUKA (Putative ADP-ribosylation factor GTPase-activating protein AGD11-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NXT5_9EUKA)

HSP 1 Score: 51.2 bits (121), Expect = 9.890e-6
Identity = 26/66 (39.39%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   16 SDPFLVLRCNGAARRTATQRSTLQPVFDEHFDIDVTDPAAELVVECWDEDSFG-SDFIGVATVHLR 210
            SDPF+V++      RT T+ STL P+++E+F+I+V     ELVV+ +D D F   D +G  T+ + 
Sbjct:  568 SDPFVVIKLGLYEARTKTKSSTLNPIWNENFEIEVVSGEEELVVQVFDRDIFSPDDSLGSITITME 633
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BLAST of jgi.p|Trimin1|158553 vs. uniprot
Match: A0A6I9TEF4_SESIN (Phospholipase D n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TEF4_SESIN)

HSP 1 Score: 50.1 bits (118), Expect = 2.500e-5
Identity = 25/66 (37.88%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   16 SDPFLVLRCNGA-ARRTATQRSTLQPVFDEHFDIDVTDPAAELVVECWDEDSFGSDFIGVATVHLR 210
            SDP++++   GA   RT    ++  PV++E+F I +  P +++  E  D D FG+D IGVA+VH +
Sbjct:   68 SDPYVIVCLAGARVARTRIINNSQNPVWNENFKIPLAHPVSQVEFEVKDNDMFGADLIGVASVHAK 133
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BLAST of jgi.p|Trimin1|158553 vs. uniprot
Match: A0A2P6NXE4_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NXE4_9EUKA)

HSP 1 Score: 50.1 bits (118), Expect = 2.530e-5
Identity = 23/58 (39.66%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:   16 SDPFLVLRCNGAARRTATQRSTLQPVFDEHFDIDVTDPAAELVVECWDEDSFGS-DFI 186
            SDPF ++  +G   ++ T++ TL+PV++E+F+  VT     L +E WD+D   S DFI
Sbjct:  615 SDPFALITIDGQRAKSKTKKKTLEPVWNENFEFQVTSATEPLTIELWDKDLMSSSDFI 672
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BLAST of jgi.p|Trimin1|158553 vs. uniprot
Match: S8DLU6_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8DLU6_9LAMI)

HSP 1 Score: 49.7 bits (117), Expect = 3.280e-5
Identity = 27/67 (40.30%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:   16 SDPFLVL--RCNGAARRTATQRSTLQPVFDEHFDIDVTDPAAE-LVVECWDEDSFGSDFIGVATVHL 207
            +DPF+VL  + +GA  +T     +L PV+++ FD  V D   E L++E WD D+FG DF+G   + L
Sbjct:  253 ADPFVVLTLKKSGAKNKTRVVNDSLNPVWNQTFDFVVEDGLHEMLILEIWDHDTFGKDFMGRCILTL 319
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BLAST of jgi.p|Trimin1|158553 vs. uniprot
Match: A0A5J5ACQ1_9ASTE (Phospholipase D n=2 Tax=Nyssaceae TaxID=4289 RepID=A0A5J5ACQ1_9ASTE)

HSP 1 Score: 49.3 bits (116), Expect = 4.680e-5
Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 1 
Query:   16 SDPFLVLRCNGAA-RRTATQRSTLQPVFDEHFDIDVTDPAAELVVECWDEDSFGSDFIGVATVHLR 210
            SDP++ +   GA   RT    ++  PV+DEHF I +  P + +  +  D D FG+D IGVATV  +
Sbjct:   66 SDPYVTVCLAGATVARTRVISNSQNPVWDEHFKIPLAHPVSHIEFQVKDNDVFGADLIGVATVSAQ 131
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BLAST of jgi.p|Trimin1|158553 vs. uniprot
Match: F9X057_ZYMTI (Phosphatidylserine decarboxylase proenzyme 2 n=5 Tax=Zymoseptoria TaxID=1047167 RepID=F9X057_ZYMTI)

HSP 1 Score: 49.3 bits (116), Expect = 4.710e-5
Identity = 26/66 (39.39%), Postives = 36/66 (54.55%), Query Frame = 1 
Query:   16 SDPFLVLRCNGAARRTATQRSTLQPVFDEHFDIDVTDP-AAELVVECWDEDSFGSDFIGVATVHLR 210
            SDPFLVL    A   T+    TL P +++ F++ V  P +A L   CWD+D F  D++G   V L 
Sbjct:  104 SDPFLVLTLGDAKEATSVMSKTLNPEWNQTFELPVNSPDSALLEAVCWDKDRFKKDYMGEFDVVLE 169
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158553 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A836CMJ1_9STRA1.450e-3990.00C2 domain-containing protein n=2 Tax=Tribonema min... [more]
F0Y125_AURAN7.730e-1043.08C2 domain-containing protein (Fragment) n=1 Tax=Au... [more]
A0A7S0W343_9CRYP2.040e-642.11Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S4EDA4_9STRA2.060e-643.10Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A2P6NXT5_9EUKA9.890e-639.39Putative ADP-ribosylation factor GTPase-activating... [more]
A0A6I9TEF4_SESIN2.500e-537.88Phospholipase D n=1 Tax=Sesamum indicum TaxID=4182... [more]
A0A2P6NXE4_9EUKA2.530e-539.66Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
S8DLU6_9LAMI3.280e-540.30Uncharacterized protein (Fragment) n=1 Tax=Genlise... [more]
A0A5J5ACQ1_9ASTE4.680e-539.39Phospholipase D n=2 Tax=Nyssaceae TaxID=4289 RepID... [more]
F9X057_ZYMTI4.710e-539.39Phosphatidylserine decarboxylase proenzyme 2 n=5 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_6contigContig_6:540691..540903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158553|e_gw1.6.261.1
BRITEko00000,ko00001,ko00002,ko01000,ko04121,ko04147
KEGG rclassRC00002
KEGG ReactionR00127,R01547,R11319
KEGG ModuleM00049
KEGG Pathwayko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130
KEGG koko:K00939,ko:K10314
EC2.7.4.3
GOsGO:0000151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019005,GO:0019538,GO:0019941,GO:0030163,GO:0031146,GO:0031461,GO:0032991,GO:0043087,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0050790,GO:0051336,GO:0051603,GO:0065007,GO:0065009,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
Preferred nameFBXO39
DescriptionF-box LRR-repeat protein
COG categoryB
Max annot lvl2759|Eukaryota
EggNOG OGsCOG4642@1|root,KOG1032@1|root,KOG1947@1|root,KOG0231@2759|Eukaryota,KOG1032@2759|Eukaryota,KOG1947@2759|Eukaryota
Evalue4.41e-12
Seed ortholog2880.D7FQA7
Hectar predicted targeting categoryother localisation
TranscriptId158875
TrackFilteredModels1
ProteinId158553
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158553gene_2098Tribonema minus UTEX_B_3156 geneContig_6 540691..540903 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2098_1exon_2098_1Tribonema minus UTEX_B_3156 exonContig_6 540691..540903 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2098CDS_2098Tribonema minus UTEX_B_3156 CDSContig_6 540691..540903 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158553Trimin1|158553|e_gw1.6.261.1Tribonema minus UTEX_B_3156 polypeptideContig_6 540691..540903 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2098 ID=mRNA_2098|Name=jgi.p|Trimin1|158553|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=213bp|location=Sequence derived from alignment at Contig_6:540691..540903- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGCCAGCGGCAGCGACCCGTTCCTCGTGCTGCGCTGCAATGGCGC
AGCGCGGCGCACGGCGACGCAGCGATCGACGCTGCAGCCGGTGTTCGATG
AGCACTTCGACATCGACGTGACGGATCCCGCCGCGGAGCTCGTGGTGGAG
TGCTGGGACGAGGACAGCTTTGGCAGCGACTTCATCGGCGTCGCGACCGT
GCACTTGAGGTGA
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protein sequence of jgi.p|Trimin1|158553

>Trimin1|158553|e_gw1.6.261.1 ID=Trimin1|158553|e_gw1.6.261.1|Name=jgi.p|Trimin1|158553|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=71bp
MFASGSDPFLVLRCNGAARRTATQRSTLQPVFDEHFDIDVTDPAAELVVE
CWDEDSFGSDFIGVATVHLR*
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mRNA from alignment at Contig_6:540691..540903-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2098 ID=mRNA_2098|Name=jgi.p|Trimin1|158553|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=213bp|location=Sequence derived from alignment at Contig_6:540691..540903- (Tribonema minus UTEX_B_3156 )
ATGTTTGCCAGCGGCAGCGACCCGTTCCTCGTGCTGCGCTGCAATGGCGC
AGCGCGGCGCACGGCGACGCAGCGATCGACGCTGCAGCCGGTGTTCGATG
AGCACTTCGACATCGACGTGACGGATCCCGCCGCGGAGCTCGTGGTGGAG
TGCTGGGACGAGGACAGCTTTGGCAGCGACTTCATCGGCGTCGCGACCGT
GCACTTGAGGTGA
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Coding sequence (CDS) from alignment at Contig_6:540691..540903-

>mRNA_2098 ID=mRNA_2098|Name=jgi.p|Trimin1|158553|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=213bp|location=Sequence derived from alignment at Contig_6:540691..540903- (Tribonema minus UTEX_B_3156 )
ATGTTTGCCAGCGGCAGCGACCCGTTCCTCGTGCTGCGCTGCAATGGCGC
AGCGCGGCGCACGGCGACGCAGCGATCGACGCTGCAGCCGGTGTTCGATG
AGCACTTCGACATCGACGTGACGGATCCCGCCGCGGAGCTCGTGGTGGAG
TGCTGGGACGAGGACAGCTTTGGCAGCGACTTCATCGGCGTCGCGACCGT
GCACTTGAGGTGA
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