mRNA_2162 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158439
Unique NamemRNA_2162
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|158439 vs. uniprot
Match: A0A835YNP2_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNP2_9STRA)

HSP 1 Score: 209 bits (531), Expect = 4.950e-68
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 
Query:    1 MLSAVALTDCAICLAAFEGGDALRRLRCGHAFHGACLQPWVDHHSDCPLCKACIRGGKGEPAVGGXXXXXXXXXXXXXXXXXVPARQSQGVASWLIGRRVFWRARNGRVQTQAAPW 348
            MLSAVALTDCAICLAAFEGGDALRRLRCGHAFHGACLQPWVDHHSDCPLCKACIRGGKGEPAVGGXXXXXXXXXXXXXXXXXVPARQSQGVASWLIGRRVFWRARNGRVQTQAAPW
Sbjct:    1 MLSAVALTDCAICLAAFEGGDALRRLRCGHAFHGACLQPWVDHHSDCPLCKACIRGGKGEPAVGGXXXXXXXXXXXXXXXXXVPARQSQGVASWLIGRRVFWRARNGRVQTQAAPW 116
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BLAST of jgi.p|Trimin1|158439 vs. uniprot
Match: A0A835YNZ9_9STRA (RING-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNZ9_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.010e-28
Identity = 48/54 (88.89%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    1 MLSAVALTDCAICLAAFEGGDALRRLRCGHAFHGACLQPWVDHHSDCPLCKACI 162
            +LSAV  TDCAICLAAFE GD LRRLRCGHAFHGACLQPWVDHHSDCPLCKA I
Sbjct:    2 VLSAVTQTDCAICLAAFEDGDELRRLRCGHAFHGACLQPWVDHHSDCPLCKASI 55
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BLAST of jgi.p|Trimin1|158439 vs. uniprot
Match: A0A7C9E695_OPUST (RING-type E3 ubiquitin transferase (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9E695_OPUST)

HSP 1 Score: 67.0 bits (162), Expect = 2.150e-11
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   10 AVALTDCAICLAAFEGGDALRRL-RCGHAFHGACLQPWVDHHSDCPLCKA 156
            AV  TDCA+CLA FEGG+ LR L +C HAFH  C+  W+  H +CPLC+A
Sbjct:   45 AVECTDCAVCLAEFEGGEELRILPKCNHAFHVPCIDTWLKSHINCPLCRA 94
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BLAST of jgi.p|Trimin1|158439 vs. uniprot
Match: A0A2P6V372_9CHLO (RING-type domain-containing protein n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V372_9CHLO)

HSP 1 Score: 68.9 bits (167), Expect = 3.240e-11
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   25 DCAICLAAFEGGDALRRLRCGHAFHGACLQPWVDHHSDCPLCKACIRGGKG 177
            +C +CL+AFE GD  R L C HAFH ACL PW+  ++ CP+C+A +R G G
Sbjct:  889 ECPVCLSAFEAGDTARELGCRHAFHAACLDPWLRSNALCPVCRADVRAGAG 939
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BLAST of jgi.p|Trimin1|158439 vs. uniprot
Match: UPI0011D2B0FA (RING-H2 finger protein ATL80 n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D2B0FA)

HSP 1 Score: 65.1 bits (157), Expect = 4.370e-11
Identity = 28/50 (56.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:    7 SAVALTDCAICLAAFEGGDALRRL-RCGHAFHGACLQPWVDHHSDCPLCK 153
            SA   +DC ICLA F  GD +R L  CGHAFH AC+ PW+  HS CP C+
Sbjct:   31 SAARFSDCTICLAEFADGDEIRVLPHCGHAFHVACIDPWLGSHSSCPSCR 80
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BLAST of jgi.p|Trimin1|158439 vs. uniprot
Match: A0A1D1Y203_9ARAE (Putative E3 ubiquitin-protein ligase RHA2B (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Y203_9ARAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.090e-10
Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:   25 DCAICLAAF-EGGDALRRLRCGHAFHGACLQPWVDHH-SDCPLCKACI 162
            +CA+CL+   EG     RLRCGH FHGACL  WV HH S CPLC+AC+
Sbjct:   90 ECAVCLSKVGEGRGEAWRLRCGHVFHGACLDRWVRHHRSTCPLCRACL 137
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BLAST of jgi.p|Trimin1|158439 vs. uniprot
Match: A0A7C9A6H6_OPUST (RING-type E3 ubiquitin transferase n=2 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9A6H6_OPUST)

HSP 1 Score: 67.0 bits (162), Expect = 1.170e-10
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   10 AVALTDCAICLAAFEGGDALRRL-RCGHAFHGACLQPWVDHHSDCPLCKA 156
            AV  TDCA+CLA FEGG+ LR L +C HAFH  C+  W+  H +CPLC+A
Sbjct:  176 AVECTDCAVCLAEFEGGEELRILPKCNHAFHVPCIDTWLKSHINCPLCRA 225
[Close]
BLAST of jgi.p|Trimin1|158439 vs. uniprot
Match: A0A804KPQ9_MUSAM ((wild Malaysian banana) hypothetical protein n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804KPQ9_MUSAM)

HSP 1 Score: 64.3 bits (155), Expect = 1.360e-10
Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   25 DCAICLAAFEGGDALRRLRCGHAFHGACLQPWVDH-HSDCPLCKACIRGGKGEPAV 189
            DC +CLA FE    + RL CGH FH ACL+ W+DH H+ CPLC+  +  G  +PAV
Sbjct:   87 DCRVCLARFEPESVVNRLPCGHLFHKACLETWLDHRHATCPLCRTHVLQGV-DPAV 141
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BLAST of jgi.p|Trimin1|158439 vs. uniprot
Match: UPI001F5CDDFF (probable E3 ubiquitin-protein ligase XERICO n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5CDDFF)

HSP 1 Score: 64.3 bits (155), Expect = 1.630e-10
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    7 SAVALTDCAICLAAFEGGDALRRLRCGHAFHGACLQPWVDH-HSDCPLCKACI 162
            +A    DC +CL  FE    + RL CGH FHGACL+ W+D+ H+ CPLC++ I
Sbjct:   86 AAATTPDCRVCLVRFEAEAVVHRLPCGHVFHGACLETWIDYDHATCPLCRSRI 138
[Close]
BLAST of jgi.p|Trimin1|158439 vs. uniprot
Match: A0A427AQQ7_ENSVE (RING-type domain-containing protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A427AQQ7_ENSVE)

HSP 1 Score: 65.1 bits (157), Expect = 2.060e-10
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:   19 LTDCAICLAAFEGGDALRRLRCGHAFHGACLQPWVD-HHSDCPLCKACIRGGKGEPA 186
            L DC +CL+ FE    + RL CGH FH ACL+ W+D HH+ CPLC+  +  G   P+
Sbjct:  144 LADCRVCLSRFELESVVNRLPCGHLFHSACLETWLDYHHATCPLCRTHVLQGDDSPS 200
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158439 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YNP2_9STRA4.950e-68100.00RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835YNZ9_9STRA1.010e-2888.89RING-type domain-containing protein (Fragment) n=1... [more]
A0A7C9E695_OPUST2.150e-1158.00RING-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
A0A2P6V372_9CHLO3.240e-1152.94RING-type domain-containing protein n=1 Tax=Micrac... [more]
UPI0011D2B0FA4.370e-1156.00RING-H2 finger protein ATL80 n=1 Tax=Syzygium oleo... [more]
A0A1D1Y203_9ARAE1.090e-1060.42Putative E3 ubiquitin-protein ligase RHA2B (Fragme... [more]
A0A7C9A6H6_OPUST1.170e-1058.00RING-type E3 ubiquitin transferase n=2 Tax=Opuntia... [more]
A0A804KPQ9_MUSAM1.360e-1051.79(wild Malaysian banana) hypothetical protein n=1 T... [more]
UPI001F5CDDFF1.630e-1049.06probable E3 ubiquitin-protein ligase XERICO n=1 Ta... [more]
A0A427AQQ7_ENSVE2.060e-1047.37RING-type domain-containing protein n=1 Tax=Ensete... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_6contigContig_6:951852..952202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158439|e_gw1.6.158.1
GOsGO:0001664,GO:0003674,GO:0003824,GO:0004842,GO:0005102,GO:0005109,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0008150,GO:0008152,GO:0008283,GO:0009056,GO:0009057,GO:0009966,GO:0009968,GO:0009987,GO:0010498,GO:0010646,GO:0010648,GO:0016020,GO:0016021,GO:0016055,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0022603,GO:0023051,GO:0023052,GO:0023057,GO:0030111,GO:0030163,GO:0030178,GO:0031224,GO:0031226,GO:0032446,GO:0032801,GO:0035567,GO:0036211,GO:0038018,GO:0043112,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051239,GO:0051603,GO:0051716,GO:0060070,GO:0060071,GO:0060828,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0071944,GO:0072089,GO:0090090,GO:0090175,GO:0140096,GO:0198738,GO:1901564,GO:1901565,GO:1901575,GO:1905114,GO:1905330,GO:2000026,GO:2000027,GO:2000050,GO:2000051
DescriptionE3 ubiquitin-protein ligase
COG categoryO
Max annot lvl35493|Streptophyta
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota,37UD3@33090|Viridiplantae,3GH90@35493|Streptophyta,4JQ7T@91835|fabids
Evalue2.04e-12
Seed ortholog3827.XP_004496896.1
Hectar predicted targeting categoryother localisation
TranscriptId158761
TrackFilteredModels1
ProteinId158439
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158439gene_2162Tribonema minus UTEX_B_3156 geneContig_6 951852..952202 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2162_1exon_2162_1Tribonema minus UTEX_B_3156 exonContig_6 951852..952202 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2162CDS_2162Tribonema minus UTEX_B_3156 CDSContig_6 951852..952202 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158439Trimin1|158439|e_gw1.6.158.1Tribonema minus UTEX_B_3156 polypeptideContig_6 951852..952202 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2162 ID=mRNA_2162|Name=jgi.p|Trimin1|158439|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=351bp|location=Sequence derived from alignment at Contig_6:951852..952202+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGAGCGCCGTCGCGCTGACGGACTGCGCCATCTGCCTGGCGGCGTT
CGAGGGCGGCGACGCGCTGCGGCGGCTGCGCTGCGGCCACGCGTTCCACG
GCGCGTGCCTGCAGCCGTGGGTCGACCACCACAGCGACTGCCCGCTGTGC
AAGGCGTGCATACGCGGGGGCAAGGGGGAGCCGGCGGTGGGGGGGGGCGC
GAGCGCGCCGCCGCCGCTGCCGCCTGCGCAGCAGCAGCAGCAGCAGGTGC
CGGCGCGCCAGTCGCAGGGTGTCGCGAGCTGGCTCATCGGGCGTCGCGTG
TTCTGGCGCGCTCGGAACGGCCGCGTGCAGACGCAGGCGGCGCCGTGGTA
G
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protein sequence of jgi.p|Trimin1|158439

>Trimin1|158439|e_gw1.6.158.1 ID=Trimin1|158439|e_gw1.6.158.1|Name=jgi.p|Trimin1|158439|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=117bp
MLSAVALTDCAICLAAFEGGDALRRLRCGHAFHGACLQPWVDHHSDCPLC
KACIRGGKGEPAVGGGASAPPPLPPAQQQQQQVPARQSQGVASWLIGRRV
FWRARNGRVQTQAAPW*
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mRNA from alignment at Contig_6:951852..952202+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2162 ID=mRNA_2162|Name=jgi.p|Trimin1|158439|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=351bp|location=Sequence derived from alignment at Contig_6:951852..952202+ (Tribonema minus UTEX_B_3156 )
ATGCTGAGCGCCGTCGCGCTGACGGACTGCGCCATCTGCCTGGCGGCGTT
CGAGGGCGGCGACGCGCTGCGGCGGCTGCGCTGCGGCCACGCGTTCCACG
GCGCGTGCCTGCAGCCGTGGGTCGACCACCACAGCGACTGCCCGCTGTGC
AAGGCGTGCATACGCGGGGGCAAGGGGGAGCCGGCGGTGGGGGGGGGCGC
GAGCGCGCCGCCGCCGCTGCCGCCTGCGCAGCAGCAGCAGCAGCAGGTGC
CGGCGCGCCAGTCGCAGGGTGTCGCGAGCTGGCTCATCGGGCGTCGCGTG
TTCTGGCGCGCTCGGAACGGCCGCGTGCAGACGCAGGCGGCGCCGTGGTA
G
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Coding sequence (CDS) from alignment at Contig_6:951852..952202+

>mRNA_2162 ID=mRNA_2162|Name=jgi.p|Trimin1|158439|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=351bp|location=Sequence derived from alignment at Contig_6:951852..952202+ (Tribonema minus UTEX_B_3156 )
ATGCTGAGCGCCGTCGCGCTGACGGACTGCGCCATCTGCCTGGCGGCGTT
CGAGGGCGGCGACGCGCTGCGGCGGCTGCGCTGCGGCCACGCGTTCCACG
GCGCGTGCCTGCAGCCGTGGGTCGACCACCACAGCGACTGCCCGCTGTGC
AAGGCGTGCATACGCGGGGGCAAGGGGGAGCCGGCGGTGGGGGGGGGCGC
GAGCGCGCCGCCGCCGCTGCCGCCTGCGCAGCAGCAGCAGCAGCAGGTGC
CGGCGCGCCAGTCGCAGGGTGTCGCGAGCTGGCTCATCGGGCGTCGCGTG
TTCTGGCGCGCTCGGAACGGCCGCGTGCAGACGCAGGCGGCGCCGTGGTA
G
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