Trimin1|350240|estExt_Genemark1.C_Ctg_590058 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|350240
Unique NameTrimin1|350240|estExt_Genemark1.C_Ctg_590058
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length535
Homology
BLAST of jgi.p|Trimin1|350240 vs. uniprot
Match: A0A836CBA3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBA3_9STRA)

HSP 1 Score: 749 bits (1935), Expect = 3.670e-268
Identity = 534/534 (100.00%), Postives = 534/534 (100.00%), Query Frame = 0
Query:    1 MEVQAQKATAVAAEIARQEAVASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAVTAALAEAAEAQVXXXXXXXXXXXXXXXXXXXXLRELLARRAVSSRHRNVLQQLLSAAVDSTAAASVRRWRHAAAXXXXPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSDGGTGADAALQPVTCWTIARSGGIEGTVEVIDQLRWRNMLCGADYERAIDAHHRAKGELGARRLLDDMEKHGFPWTHSACMSVVLALSDARKVDGAMELLDEMSVRGVAATSKDYVMLLDRFGCKRAMALLHHMESHGVVPDFEYYAGAMGACTLRVGLNGVVDLDEASNLLQWMLDKGVSDFETWTMLLEAYGRVGQADRMLDAYKAMCACARRHAAAATVDADDDGACTNYRARPLVDTIDTMLEYAANLDSVHVAEYVWEEFGRWEGLQPDGDTVGRMARVLADAGELEKAEKLHASTMPKHSNYRKQREAREAGSEANNLL 534
            MEVQAQKATAVAAEIARQEAVASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAVTAALAEAAEAQVXXXXXXXXXXXXXXXXXXXXLRELLARRAVSSRHRNVLQQLLSAAVDSTAAASVRRWRHAAAXXXXPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSDGGTGADAALQPVTCWTIARSGGIEGTVEVIDQLRWRNMLCGADYERAIDAHHRAKGELGARRLLDDMEKHGFPWTHSACMSVVLALSDARKVDGAMELLDEMSVRGVAATSKDYVMLLDRFGCKRAMALLHHMESHGVVPDFEYYAGAMGACTLRVGLNGVVDLDEASNLLQWMLDKGVSDFETWTMLLEAYGRVGQADRMLDAYKAMCACARRHAAAATVDADDDGACTNYRARPLVDTIDTMLEYAANLDSVHVAEYVWEEFGRWEGLQPDGDTVGRMARVLADAGELEKAEKLHASTMPKHSNYRKQREAREAGSEANNLL
Sbjct:    1 MEVQAQKATAVAAEIARQEAVASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAVTAALAEAAEAQVXXXXXXXXXXXXXXXXXXXXLRELLARRAVSSRHRNVLQQLLSAAVDSTAAASVRRWRHAAAXXXXPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSDGGTGADAALQPVTCWTIARSGGIEGTVEVIDQLRWRNMLCGADYERAIDAHHRAKGELGARRLLDDMEKHGFPWTHSACMSVVLALSDARKVDGAMELLDEMSVRGVAATSKDYVMLLDRFGCKRAMALLHHMESHGVVPDFEYYAGAMGACTLRVGLNGVVDLDEASNLLQWMLDKGVSDFETWTMLLEAYGRVGQADRMLDAYKAMCACARRHAAAATVDADDDGACTNYRARPLVDTIDTMLEYAANLDSVHVAEYVWEEFGRWEGLQPDGDTVGRMARVLADAGELEKAEKLHASTMPKHSNYRKQREAREAGSEANNLL 534          
BLAST of jgi.p|Trimin1|350240 vs. uniprot
Match: A0A835YW77_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW77_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.230e-9
Identity = 40/121 (33.06%), Postives = 64/121 (52.89%), Query Frame = 0
Query:  300 RKVDGAMELLDEMSVRGVAATSKDYVMLL-------------DRFGCKRAMALLHHMESHGVVPDFEYYAGAMGACTLRVGLNGVVDLDEASNLLQWMLDKGVSDFE-TWTMLLEAYGRVG 406
            R+++ A++L+DEM  R ++ +  DY++L+             DR G ++A+ LL  M+  G VPD  +Y+ A+  C          DL  A N  Q M DKG+   + +W  LL+A+GR G
Sbjct:   12 RRLNAALQLIDEMQQRNISPSDADYLILIVACDRGKRRTRGGDRGGSEQALELLQRMQDKGPVPDLRHYSAAITVCVTEG------DLANAVNTFQSMRDKGIKPNDWSWAALLDAFGRAG 126          
BLAST of jgi.p|Trimin1|350240 vs. uniprot
Match: A0A836CHU7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHU7_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 8.400e-5
Identity = 68/258 (26.36%), Postives = 109/258 (42.25%), Query Frame = 0
Query:  271 RRLLDDMEKHGFPWTHSACMSVVLALSDARKVDGAMELLDEMSVRGVAATSKDYVMLLDRF--GCKRAM----ALLHHMESHGVVP--------------DFEYYAGAMGACTLRVGLNG----VVDLDEASNLLQWMLDKGVSDFETWTMLLEAYGRVGQADRMLDAYKAMCACARRHAAAATVDADDDGACTNYRARPLVDTIDTMLEYAANLDSVHVAEYVWEEFGRWEGLQPDGDTVGRMARVLADAGELEKAE 504
            +RLL   E+ GFPWT +AC +V+ A   A ++  AM+L+++M +RG++  + +Y+ L++    G  R++     LL  +   G VP                + Y+ A+ AC  + G  G    ++++      +   + K V  F          GRV   D ML  YK M A                         P V  I+ ML +A +  +  VAE +W E    + LQP   +   + R  A A + EK E
Sbjct:  660 KRLL---EREGFPWTQTACSAVLQACRKAGEMHLAMQLIEQMQLRGISPHASEYLKLIEHVASGSDRSVQALRTLLLCLCDIGSVPRGAIELMRDIDGAWTHDAYSAALQACA-QAGRWGDALRLLNIRMRQRSICSSVGKRVGPFNFEQQTQTDKGRV---DEMLALYKNMRASGHE---------------------PDVIAINDMLAHAGSAGNRDVAEALWRELRDLQ-LQPTRSSYNALVRCYAVAKDPEKEE 888          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350240 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CBA3_9STRA3.670e-268100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YW77_9STRA2.230e-933.06PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CHU7_9STRA8.400e-526.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 96..116
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 173..217
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 504..526
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 504..534
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 183..210
NoneNo IPR availablePANTHERPTHR47932ATPASE EXPRESSION PROTEIN 3coord: 394..510
coord: 230..421
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 367..532
e-value: 2.9E-11
score: 45.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 223..333
e-value: 5.0E-9
score: 37.7
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 394..419
e-value: 0.1
score: 12.9
coord: 291..317
e-value: 0.16
score: 12.2
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 394..420
e-value: 0.0031
score: 15.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_59contigContig_59:664533..670376 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350240mRNA_11151Tribonema minus UTEX_B_3156 mRNAContig_59 664533..670376 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|350240|estExt_Genemark1.C_Ctg_590058 ID=Trimin1|350240|estExt_Genemark1.C_Ctg_590058|Name=jgi.p|Trimin1|350240|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=535bp
MEVQAQKATAVAAEIARQEAVASGGSSGGGGSGARPDDARTASSAFVSED
ASAARPANNGRGGSAAATAAAALTAAVTAALAEAAEAQVVVAVAVAELEE
AAAAEVNAALRELLARRAVSSRHRNVLQQLLSAAVDSTAAASVRRWRHAA
AAARRPHPGPAAAALAAVTTAKPMDLSAQEAPAPAPAPVPAPVPAPVPAP
APPPPPPQSDGGTGADAALQPVTCWTIARSGGIEGTVEVIDQLRWRNMLC
GADYERAIDAHHRAKGELGARRLLDDMEKHGFPWTHSACMSVVLALSDAR
KVDGAMELLDEMSVRGVAATSKDYVMLLDRFGCKRAMALLHHMESHGVVP
DFEYYAGAMGACTLRVGLNGVVDLDEASNLLQWMLDKGVSDFETWTMLLE
AYGRVGQADRMLDAYKAMCACARRHAAAATVDADDDGACTNYRARPLVDT
IDTMLEYAANLDSVHVAEYVWEEFGRWEGLQPDGDTVGRMARVLADAGEL
EKAEKLHASTMPKHSNYRKQREAREAGSEANNLL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat