mRNA_11095 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|168620
Unique NamemRNA_11095
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|168620 vs. uniprot
Match: A0A835YNN6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNN6_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.830e-38
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1 
Query:    1 MKKECQERGNAKKRLLKCQAPGCNCGPKGSSLFCVKHGGGTRCSVLGCGRGAISNGRXXXXXXXXXXXXXXXXXXXTARSEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPECCSALPE 381
            MKKECQERGNAKKRLLKCQAPGCNCGPKGSSLFCVKHGGGTRCSVLGCGRGAISNGRXXXXXXXXXXXXXXXXXXXTARSEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPECCSALPE
Sbjct:    1 MKKECQERGNAKKRLLKCQAPGCNCGPKGSSLFCVKHGGGTRCSVLGCGRGAISNGRXXXXXXXXXXXXXXXXXXXTARSEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPECCSALPE 127
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|168620 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YNN6_9STRA1.830e-38100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_59contigContig_59:102760..103140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|168620|e_gw1.59.56.1
Hectar predicted targeting categoryother localisation
TranscriptId168942
TrackFilteredModels1
ProteinId168620
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168620gene_11095Tribonema minus UTEX_B_3156 geneContig_59 102760..103140 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11095_1exon_11095_1Tribonema minus UTEX_B_3156 exonContig_59 102760..103140 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11095CDS_11095Tribonema minus UTEX_B_3156 CDSContig_59 102760..103140 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168620Trimin1|168620|e_gw1.59.56.1Tribonema minus UTEX_B_3156 polypeptideContig_59 102760..103140 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11095 ID=mRNA_11095|Name=jgi.p|Trimin1|168620|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=381bp|location=Sequence derived from alignment at Contig_59:102760..103140+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAAAGAGTGCCAGGAGCGGGGAAACGCCAAGAAGAGACTGCTAAA
GTGTCAAGCACCAGGGTGCAACTGTGGTCCCAAGGGATCATCACTTTTTT
GTGTCAAGCACGGAGGTGGAACACGCTGCTCAGTGCTTGGCTGTGGCAGA
GGTGCTATAAGCAACGGCCGTTGTGTTGCGCATGGTGGCGGCCCGAGATG
CTTGGAGGTACGCTGTGGCAATGGTGCCACAGCACGTTCGGAATACTGTG
TCACTCACGGCGGCAGGAGGAGGTGCCTGAAGGCTGGCTGTAGCAATGGT
GCCCAAGGCGGTTCAGACTCATGTACTACTCCTGGTGGCGGCCAGCGATG
CGAGCCTGAGTGTTGCTCTGCGCTGCCAGAG
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protein sequence of jgi.p|Trimin1|168620

>Trimin1|168620|e_gw1.59.56.1 ID=Trimin1|168620|e_gw1.59.56.1|Name=jgi.p|Trimin1|168620|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=127bp
MKKECQERGNAKKRLLKCQAPGCNCGPKGSSLFCVKHGGGTRCSVLGCGR
GAISNGRCVAHGGGPRCLEVRCGNGATARSEYCVTHGGRRRCLKAGCSNG
AQGGSDSCTTPGGGQRCEPECCSALPE
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mRNA from alignment at Contig_59:102760..103140+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11095 ID=mRNA_11095|Name=jgi.p|Trimin1|168620|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=381bp|location=Sequence derived from alignment at Contig_59:102760..103140+ (Tribonema minus UTEX_B_3156 )
ATGAAGAAAGAGTGCCAGGAGCGGGGAAACGCCAAGAAGAGACTGCTAAA
GTGTCAAGCACCAGGGTGCAACTGTGGTCCCAAGGGATCATCACTTTTTT
GTGTCAAGCACGGAGGTGGAACACGCTGCTCAGTGCTTGGCTGTGGCAGA
GGTGCTATAAGCAACGGCCGTTGTGTTGCGCATGGTGGCGGCCCGAGATG
CTTGGAGGTACGCTGTGGCAATGGTGCCACAGCACGTTCGGAATACTGTG
TCACTCACGGCGGCAGGAGGAGGTGCCTGAAGGCTGGCTGTAGCAATGGT
GCCCAAGGCGGTTCAGACTCATGTACTACTCCTGGTGGCGGCCAGCGATG
CGAGCCTGAGTGTTGCTCTGCGCTGCCAGAG
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Coding sequence (CDS) from alignment at Contig_59:102760..103140+

>mRNA_11095 ID=mRNA_11095|Name=jgi.p|Trimin1|168620|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=381bp|location=Sequence derived from alignment at Contig_59:102760..103140+ (Tribonema minus UTEX_B_3156 )
ATGAAGAAAGAGTGCCAGGAGCGGGGAAACGCCAAGAAGAGACTGCTAAA
GTGTCAAGCACCAGGGTGCAACTGTGGTCCCAAGGGATCATCACTTTTTT
GTGTCAAGCACGGAGGTGGAACACGCTGCTCAGTGCTTGGCTGTGGCAGA
GGTGCTATAAGCAACGGCCGTTGTGTTGCGCATGGTGGCGGCCCGAGATG
CTTGGAGGTACGCTGTGGCAATGGTGCCACAGCACGTTCGGAATACTGTG
TCACTCACGGCGGCAGGAGGAGGTGCCTGAAGGCTGGCTGTAGCAATGGT
GCCCAAGGCGGTTCAGACTCATGTACTACTCCTGGTGGCGGCCAGCGATG
CGAGCCTGAGTGTTGCTCTGCGCTGCCAGAG
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