mRNA_11927 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|153927
Unique NamemRNA_11927
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|153927 vs. uniprot
Match: A0A835ZDI3_9STRA (Quinon protein alcohol dehydrogenase-like superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDI3_9STRA)

HSP 1 Score: 760 bits (1963), Expect = 6.210e-277
Identity = 399/399 (100.00%), Postives = 399/399 (100.00%), Query Frame = 1
Query:    1 MRVLTADETGLVKVWQVESRKLLVTHGLGHQSRVRGVRGLCWGLASDGTSPDYSRVHVGRENGVVEDWSVSHTAAKGKKLPASATVNQRSQREGCPASIVSLHALPGTASEADSPPTMVACSATGEVRVAPCDAAAGEGSSFKAPAPVHTAIGRGGVLATGGQDNDIKVWDVATGQCTWRAKNVPMDAKLQLSVPVWPSALAPLRAAHEDPALTALLAGTAHRHIRLYDTRAARRPRQTIDYGEHRITALCVIGGGGGSAHTAIVGDAAGELTALDLRALRRRRRYGEPGGGAVRAFAVHPTLPVFAAVGLDRVCRVYDVSGGXXXXXAPLAALYLKQRASRVLFCDEGRATPDGAIDRAAAALEGGDDGWGSAEEYEMGAGSSEEGDAEESEMESEGD 1197
            MRVLTADETGLVKVWQVESRKLLVTHGLGHQSRVRGVRGLCWGLASDGTSPDYSRVHVGRENGVVEDWSVSHTAAKGKKLPASATVNQRSQREGCPASIVSLHALPGTASEADSPPTMVACSATGEVRVAPCDAAAGEGSSFKAPAPVHTAIGRGGVLATGGQDNDIKVWDVATGQCTWRAKNVPMDAKLQLSVPVWPSALAPLRAAHEDPALTALLAGTAHRHIRLYDTRAARRPRQTIDYGEHRITALCVIGGGGGSAHTAIVGDAAGELTALDLRALRRRRRYGEPGGGAVRAFAVHPTLPVFAAVGLDRVCRVYDVSGGXXXXXAPLAALYLKQRASRVLFCDEGRATPDGAIDRAAAALEGGDDGWGSAEEYEMGAGSSEEGDAEESEMESEGD
Sbjct:    1 MRVLTADETGLVKVWQVESRKLLVTHGLGHQSRVRGVRGLCWGLASDGTSPDYSRVHVGRENGVVEDWSVSHTAAKGKKLPASATVNQRSQREGCPASIVSLHALPGTASEADSPPTMVACSATGEVRVAPCDAAAGEGSSFKAPAPVHTAIGRGGVLATGGQDNDIKVWDVATGQCTWRAKNVPMDAKLQLSVPVWPSALAPLRAAHEDPALTALLAGTAHRHIRLYDTRAARRPRQTIDYGEHRITALCVIGGGGGSAHTAIVGDAAGELTALDLRALRRRRRYGEPGGGAVRAFAVHPTLPVFAAVGLDRVCRVYDVSGGXXXXXAPLAALYLKQRASRVLFCDEGRATPDGAIDRAAAALEGGDDGWGSAEEYEMGAGSSEEGDAEESEMESEGD 399          
BLAST of jgi.p|Trimin1|153927 vs. uniprot
Match: D8LFI9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFI9_ECTSI)

HSP 1 Score: 226 bits (576), Expect = 1.270e-65
Identity = 160/409 (39.12%), Postives = 214/409 (52.32%), Query Frame = 1
Query:    1 MRVLTADETGLVKVWQVESRKLLVTHGLGHQSRVRGVRGLCWGLASDGTSPD------YSRVHVGRENGVVEDWSVSHTAAKGKKLPASATVNQRSQREGCPASIVSLHALPGTASEADSPPTMVACSATGEVRVAPC-------DAAAGEGSSFKAPAPVHTAIGRGG---VLATGGQDNDIKVWDVATGQCTWRAKNVPMDAKLQLSVPVWPSALAPLRAAHEDPA-LTALLAGTAHRHIRLYDTRAARRPRQTIDYGEHRITALCVIGGGGGSAHTAIVGDAAGELTALDLRALRRRRRYGEPGGGAVRAFAVHPTLPVFAAVGLDRVCRVYDVSGGXXXXXAPLAALYLKQRASRVLFCDE------------GRATPDGAIDRAAAALE-GGDDGWGSAEEYEM 1137
            MR++TADETGLVKV ++ES + L     G Q+R   VR +C+  A+   S        ++R+HV R  G VE W VS +   G+       ++ R     C A+ V+L  LP  +S +     ++ C+  GEV+V+         D A     S + P     A G GG    LA GG++ND+K WD+ TG+CTW+AKNVP D  L +  PVW ++L PL AA      L  ++AGTAHR +RLYD RA +RP  ++D  EH +T + V   G       +V D AG +  LDLR ++  RR+  P G +VR  A HPTLPV A VGLDR+ RVY               +YLKQR + VLF  E            G     GA D A A  +  G +GWGS EEYEM
Sbjct:    1 MRIITADETGLVKVVRLESGECLAVSA-GEQARANAVRAVCFDHAAPAASRHRASDDFFARIHVARAAGAVETWDVSQSERDGQT--GGCALSARGTAVECAAAPVALACLPPASSSSSESSRVLTCNGEGEVQVSRAAPDGRSNDEAERTTLSIRGPVSAAVADGDGGSGLALAAGGKENDLKTWDLGTGKCTWKAKNVPHDF-LDMRQPVWITSLCPLAAATGGGGGLQQMVAGTAHRQVRLYDARAQKRPTHSVDADEHGVTTMAVAPDG----REVVVADTAGLVRVLDLRKMKWGRRFEGPAG-SVRGLAFHPTLPVLACVGLDRMARVYGYHSREQKFQ-----VYLKQRLNAVLFDGEEGEVQVAADGEDGEKKKSGAKDGAGAGEDWSGSEGWGSGEEYEM 395          
BLAST of jgi.p|Trimin1|153927 vs. uniprot
Match: A0A2D4BHJ4_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BHJ4_PYTIN)

HSP 1 Score: 146 bits (368), Expect = 2.560e-36
Identity = 130/377 (34.48%), Postives = 170/377 (45.09%), Query Frame = 1
Query:    1 MRVLTADETGLVKVWQVESRKLLVTHGLGHQ--SRVRGVRGLCWGLASDGTSPDYSRVHVGRENGVVEDWSVSHTAAKGKKLPASATVNQRSQREGCPASIVSLHALPGTASEADSPPTMVACSATGEVRVAPCDAAAGEGSSFKAP-----------APVHTAIGRGGVLATGGQDNDIKVWDVATGQCTWRAKNVPMDAKLQLSVPVWPSALAPLRAAHEDPALTALLAGTAHRHIRLYDTRAARRPRQTIDYGEHRITALCVIGGGGGSAHTAIVGDAAGELTALDLRALRRRRRYGEPGGGAVRAFAVHPTLPVFAAVGLDRVCRVYDVSGGXXXXXAPLAALYLKQRASRVLFCDEGR----ATPDGAIDRA 1080
            MRV+ ADETGL+K  ++E  +  V  G  HQ   R R +  +CW    +  S     V V R + VVE +   H A+        A V     R G                      ++V C+A G+V V      AG+ S+F A            A  H        +ATGG++ D+ VW +   +  ++AKNV  D KL + VPVW   L  L           ++ GT H HIRLYDT   RRP   I++GE+ I ALCV              D  G +   DLR LR   R   P G AVR  A HPTLP  AAVGLDR   V+DV+          +++Y KQR + VLFC++G     AT DG   RA
Sbjct:    1 MRVIVADETGLLKSIELEKNEQRVI-GNRHQPQGRERAIERICWYQDENQDSSARDSVVVARASSVVELYRADHAASDELSRERQADVG----RYG----------------------SVVHCTAAGDVLVRNSLREAGKPSTFSAGPDLERMRLDPFAQTH--------IATGGKERDLNVWSLERQEAVFKAKNVTHD-KLDMRVPVWVKDLQFLSTPGSSNGHRVVV-GTGHHHIRLYDTNTKRRPVLQIEHGEYPINALCV----SPDETRVFAADTTGCVDVFDLRTLRHMGRCIGPNG-AVRDLACHPTLPFVAAVGLDRFVHVFDVNTRQYH-----SSIYAKQRLNAVLFCNDGAKAFAATDDGEDGRA 330          
BLAST of jgi.p|Trimin1|153927 vs. uniprot
Match: A0A6G0XIB0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIB0_9STRA)

HSP 1 Score: 144 bits (364), Expect = 5.480e-36
Identity = 127/352 (36.08%), Postives = 170/352 (48.30%), Query Frame = 1
Query:    1 MRVLTADETGLVKVWQVESRKLLVTHGLGHQSRVRGVRGLCWGLASDGTSPDYSRVHVGRENGVVEDWSVSHTAAKGKKLPASATVNQRSQREGCPASIVSLHALPGTASEADSPPTMVACSATGEVRVAPCDAAAGEGSSFKAPAPVHTA-IGRGG--VLATGGQDNDIKVWDVATGQCTWRAKNVPMDAKLQLSVPVWPSALAPLRAAHEDPALTALLAGTAHRHIRLYDTRAARRPRQTIDYGEHRITALCVIGGGGGSAHTAIVGDAAGELTALDLRALRRRRRYGEPGGGAVRAFAVHPTLPVFAAVGLDRVCRVYDVSGGXXXXXAPLAALYLKQRASRVLFCDEG 1047
            MRV+  DETGLVK   +E+    +  G   QSR    R L W      T  D   V V R NG V+   +   A+     P S T      REG P  +       G  SE  S   +V C+  G V V           SF     + T  +   G  V+A GG++ D+ +W++ T Q  ++AKN+P D  L + VPVW  A+A L +A++   L     GTA+  IR+YDT+  RRP     +GEH IT+L V        +  I GD AG + ALDLR  +   RY  P G ++R  A+HP+LP  AAVGLDR+  V+ V          +   Y KQR + VLF DEG
Sbjct:    1 MRVIVGDETGLVKNISLEASSAQLLSG-SSQSRATSARYLAW------TDND---VVVARMNGHVDCVDIHGGAS-----PWSFT------REGSPVGL-------GVISEYGS---IVRCNTAGRVEVVHPLHLKPNPPSFDVGHDIQTLRVDPFGSHVIAIGGKERDVNLWNLETQQAIFKAKNIPHD-NLDMRVPVWVKAMAFLPSANDGHHLAV---GTAYHQIRIYDTKTKRRPVSEASFGEHPITSLVV------HENRVIFGDTAGNVNALDLRTFKHLGRYHGPVG-SIRDIALHPSLPYMAAVGLDRMVHVFHVD-----TRKAVHTYYAKQRLNAVLFTDEG 305          
BLAST of jgi.p|Trimin1|153927 vs. uniprot
Match: A0A485L5S9_9STRA (Aste57867_16148 protein n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L5S9_9STRA)

HSP 1 Score: 144 bits (364), Expect = 5.950e-36
Identity = 122/352 (34.66%), Postives = 169/352 (48.01%), Query Frame = 1
Query:    1 MRVLTADETGLVKVWQVESRKLLVTHGLGHQSRVRGVRGLCWGLASDGTSPDYSRVHVGRENGVVEDWSVSHTAAKGKKLPASATVNQRSQREGCPASIVSLHALPGTASEADSPPTMVACSATGEVRVAPCDAAAGEGSSFKAPAPVHTA-IGRGG--VLATGGQDNDIKVWDVATGQCTWRAKNVPMDAKLQLSVPVWPSALAPLRAAHEDPALTALLAGTAHRHIRLYDTRAARRPRQTIDYGEHRITALCVIGGGGGSAHTAIVGDAAGELTALDLRALRRRRRYGEPGGGAVRAFAVHPTLPVFAAVGLDRVCRVYDVSGGXXXXXAPLAALYLKQRASRVLFCDEG 1047
            MRV+ ADETGLVK   +E+    +  G   Q+R    R L W           S V VGR NG V+  +++  +      P S T      R+G P  +       G  +E  S   +V C+  G V V           SF+    +HT  +   G  V+  GG++ D+ +W++ T    ++AKN+  D  L + VPVW  ALA L     D +   ++ GTA+  IR+YDT   RRP     +G+H IT+L V        H  I GD AG + A+D+R  +   RY  P G ++R  A+HPTLP  AAVGLDR+  VY V          +   Y KQR + VLF DEG
Sbjct:    1 MRVVIADETGLVKNVALEASTAELLSGPS-QNRATSARHLSW---------SESDVVVGRVNGAVDCHALNGAS------PWSFT------RDGSPVGL-------GVVAEFGS---IVRCNTAGRVEVVHPLHVKPNPPSFEVGHDIHTMRVDPFGSHVIGIGGKERDLNLWNLETQTAVFKAKNITHD-NLDMRVPVWVKALAFLPRPASDSSGHRVVVGTAYHQIRIYDTNTKRRPVSETTFGDHPITSLVV------QDHRIIFGDTAGNVNAIDMRTFKHLGRYHGPVG-SIRDIALHPTLPYMAAVGLDRMVHVYHVE-----TRKNVHTYYAKQRLNAVLFTDEG 307          
BLAST of jgi.p|Trimin1|153927 vs. uniprot
Match: A0A024TXS7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TXS7_9STRA)

HSP 1 Score: 144 bits (362), Expect = 9.770e-36
Identity = 129/372 (34.68%), Postives = 175/372 (47.04%), Query Frame = 1
Query:    1 MRVLTADETGLVKVWQVESRKLLVTHGLGHQSRVRGVRGLCWGLASDGTSPDYSRVHVGRENGVVEDWSVSHTAAKGKKLPASATVNQRSQREGCPASIVSLHALPGTASEADSPPTMVACSATGEVRVAPCDAAAGEGSSFKAPAPVHTAIGR---GGVLATGGQDNDIKVWDVATGQCTWRAKNVPMDAKLQLSVPVWPSA---LAPLRAAHEDPALTALLAGTAHRHIRLYDTRAARRPRQTIDYGEHRITALCVIGGGGGSAHTAIVGDAAGELTALDLRALRRRRRYGEPGGGAVRAFAVHPTLPVFAAVGLDRVCRVYDVSGGXXXXXAPLAALYLKQRASRVLFCDEG-RATPDGAIDRAAAALE 1095
            MRV+  DETGLVK   +E+    +  G   Q R +  R L W   SD        V V R NG V+   ++  +      P S T      REG P  +       G  +E  S   +V C+  G V V           +F     +HT         V+A GG++ D+ VWD+ T Q  ++AKNV  D  L + VPVW  A   L P  AA    +   L+ GTA+  IR+YDT A RRP     +GEH IT+L V        H  + GD AG + A+D+R  +   RY  P G ++R  A+HPTLP  A+VGLDR+  V+ +          +   Y KQR + VLF DEG +A P  A+  A   +E
Sbjct:    1 MRVIVGDETGLVKNVALEAATATMLTGTA-QGRSKSARYLAW---SD------KDVVVARTNGDVDCVGINGGS------PWSFT------REGSPVGM-------GVVAEYGS---IVRCNTAGRVEVVHPLHVKPNPPAFNVGNDIHTLRVNPYASNVIAIGGKERDMNVWDLQTQQAVFKAKNVTHD-NLDMRVPVWVKAITFLPPTSAAGGSESGHRLVVGTAYHQIRIYDTSAKRRPVLETSFGEHPITSLVV------QDHRVMFGDTAGNVNAIDMRTFKHLGRYHGPVG-SIRDMALHPTLPYVASVGLDRMVHVHHIEA-----RKAVHTYYAKQRLNAVLFTDEGVKAAPIAAVPAAEDVVE 327          
BLAST of jgi.p|Trimin1|153927 vs. uniprot
Match: D8LW75_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LW75_BLAHO)

HSP 1 Score: 139 bits (351), Expect = 2.590e-34
Identity = 115/351 (32.76%), Postives = 174/351 (49.57%), Query Frame = 1
Query:    1 MRVLTADETGLVKVWQVESRKLLVTHGLGHQSRVRGVRGLCWGLASDGTSPDYSRVHVGRENGVVEDWSVSHTAAKGKKLPASATVNQRSQREGCPASIVSLHALPGTASEADSPPTMVACSATGEVRVAPC-DAAAGEGSSFKAP-APVHTAIGRGGVLATGGQDNDIKVWDVATGQCTWRAKNVPMDAKLQLSVPVWPSALAPLRAAHEDPALTALLAGTAHRHIRLYDTRAARRPRQTIDYGEHRITALCVIGGGGGSAHTAIVGDAAGELTALDLRALRRRRRYGEPGGGAVRAFAVHPTLPVFAAVGLDRVCRVYDVSGGXXXXXAPLAALYLKQRASRVLFCDEG 1047
            MR++TADETGL+K   +E++++      G QSR   V  + W   S     + + V V   NG V+ W V  T            V + S  EG P  +  +       +E D    ++ C+  G+V +    DA   +    K P A +H       + A GG++ND+ ++D+ T +  ++A+NVP D  LQL VP+W   +  ++  H   +   L   T H H+RLYDTRA RRP Q+++ G    T  C +     S  T   GD  G ++ +DLR ++    Y +   G+VR  A+HPT+ V A VGLDRV RV+DV+         L  +YL+Q+ + VL   EG
Sbjct:    1 MRIITADETGLIKQILIENKRI---QRWGTQSRDNSVERMVWAGMS---GCEENEVAVALVNGRVQVWDVDKTVI----------VKEFSGIEGIPRGLGVIR------NEEDR--KVITCTDDGKVNLYNWKDAEIVKTFDVKGPIANMHLCPSNNQIFAVGGRENDLALYDIETEEPVFKARNVPNDW-LQLRVPIW---VTDMKFLHPKSSGFELAVVTGHHHVRLYDTRAKRRPVQSVEIGSRPFT-CCTVSHDENSLFT---GDTIGRVSRIDLRTMQLNGVY-KGNTGSVREIALHPTMEVMATVGLDRVMRVFDVA-----TRQQLHRVYLRQKLNCVLVSSEG 313          
BLAST of jgi.p|Trimin1|153927 vs. uniprot
Match: A0A1V9YET1_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YET1_9STRA)

HSP 1 Score: 135 bits (341), Expect = 8.940e-33
Identity = 120/353 (33.99%), Postives = 160/353 (45.33%), Query Frame = 1
Query:    1 MRVLTADETGLVKVWQVESRKLLVTHGLGHQSRVRGVRGLCWGLASDGTSPDYSRVHVGRENGVVEDWSVSHTAAKGKKLPASATVNQRSQREGCPASIVSLHALPGTASEADSPPTMVACSATGEVRVAPCDAAAGEGSSFKAPAPVHTAIG---RGGVLATGGQDNDIKVWDVATGQCTWRAKNVPMDAKLQLSVPVWPSALA--PLRAAHEDPALTALLAGTAHRHIRLYDTRAARRPRQTIDYGEHRITALCVIGGGGGSAHTAIVGDAAGELTALDLRALRRRRRYGEPGGGAVRAFAVHPTLPVFAAVGLDRVCRVYDVSGGXXXXXAPLAALYLKQRASRVLFCDE 1044
            MRV+  DETGLVK   +E+    V    G QSR  G + L W    D        V + R NG V+       AA G   P + +       +G P   V +  LP   S       +V C+  G V V          ++F     +HT         ++A GG++ D+ +WD+ T   T++AKNV  D  L + VPVW  A+   P    H       L+ GT H  +R+YDT   RRP Q   +GE  ITA+ V        +  I  D AG + ALDLR  +   RY  P G ++R  A+HPTLP  AAVGLDR+  VY            +   Y KQR + VLF DE
Sbjct:    1 MRVIIGDETGLVKSVGLEAGTAQVLGAPG-QSRATGAKYLAWTADKD--------VVIARANGRVDC-----VAADGADAPWTFS------SQGAP---VGMGVLPEFGS-------IVRCNVEGRVEVVHPLNIKPNPAAFSVGQDIHTLRVDPLSSNIIAIGGKERDLNLWDLETQTATFKAKNVTHD-NLDMRVPVWVKAIEFLPPSGGHR------LVVGTGHHQVRIYDTNTKRRPVQETSFGELPITAIAV------KDNRVIFSDTAGNINALDLRNFKHLGRYHGPVG-SIRDIALHPTLPYMAAVGLDRMVHVYHTE-----TRKNVHTYYAKQRLNAVLFTDE 304          
BLAST of jgi.p|Trimin1|153927 vs. uniprot
Match: M4BCG2_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BCG2_HYAAE)

HSP 1 Score: 136 bits (343), Expect = 1.040e-32
Identity = 123/368 (33.42%), Postives = 175/368 (47.55%), Query Frame = 1
Query:    1 MRVLTADETGLVKVWQVE-SRKLLVTHGLGHQSRVRGVRGLCWGLASDGTSPDYSRVHVGRENGVVEDWSVSHTAAKGKKLPASATVN---QRSQREGCPASIVSLHALPGTASEADSPPTMVACSATGEVRVA-----PCDAAA--------GEGSSFKAPAPVHTAIGRGGVLATGGQDNDIKVWDVATGQCTWRAKNVPMDAKLQLSVPVWPSALAPLRAAHEDPALTALLAGTAHRHIRLYDTRAARRPRQTID-YGEHRITALCVIGGGGGSAHTAI-VGDAAGELTALDLRALRRRRRYGEPGGGAVRAFAVHPTLPVFAAVGLDRVCRVYDVSGGXXXXXAPLAALYLKQRASRVLFCDEG 1047
            MRVL ADETGL+K  ++E S + +++     Q+R RG++ LCW             V + R NG VE +  SH    GK L  S           +E      V L  +    S       +V CS TG+V V        DA          GE +  +    + T IG       GG+++D+ +W + T Q  ++AKNV  + KL + VPVW   L  L           ++ G+ ++ +R+YD+   RRP Q ++ +GEH I +LCV         T I VGD AG L  LDLR L+   R   P G ++R  + HPTLP  AAVGLDR+  V+DV+            +Y KQR + +LFC +G
Sbjct:    1 MRVLVADETGLLKSIELEKSEQYILSSRKQPQARARGIQRLCWYANEQQAVNGQQNVVLARANGCVESYETSH----GKILNVSKEPEWSWPMQDKEQDKTRCVGLEVIRKWGS-------VVQCSDTGDVVVRRMLQDTTDATVERKQFSVGGELNIMRLEPALQTVIG------VGGKEHDLNLWSLETQQVLFKAKNVTHN-KLDMRVPVWVKDLRFLSTPGSSNGYRVVV-GSGYQCVRIYDSNTKRRPVQELEKFGEHPIQSLCV-----SPDETRIYVGDTAGNLDILDLRTLKHMGRCTGPIG-SIRDISCHPTLPYIAAVGLDRMVHVFDVNTRKHRH-----VIYAKQRLNCLLFCADG 338          
BLAST of jgi.p|Trimin1|153927 vs. uniprot
Match: W4G1J7_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G1J7_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.180e-30
Identity = 126/368 (34.24%), Postives = 169/368 (45.92%), Query Frame = 1
Query:    1 MRVLTADETGLVKVWQVESRKLLVTHGLGHQSRVRGVRGLCWGLASDGTSPDYSRVHVGRENGVVEDWSVSHTAAKGKKLPASATVNQRSQREGCPASIVSLHALPGTASEADSPPTMVACSATGEVRVAPCDAAAGEGSSFKAPAPVHTAIGR---GGVLATGGQDNDIKVWDVATGQCTWRAKNVPMDAKLQLSVPVWPSALA--PLRAAHEDPALTALLAGTAHRHIRLYDTRAARRPRQTIDYGEHRITALCVIGGGGGSAHTAIVGDAAGELTALDLRALRRRRRYGEPGGGAVRAFAVHPTLPVFAAVGLDRVCRVYDVSGGXXXXXAPLAALYLKQRASRVLFCDEG-RATPDGAIDRAAA 1086
            MRV+ ADETGLVK   VE+    V  G   QSR    R L W             V V R NG V+   V H  +     P S T      REG P  +       G  +E  S   +V C+  G V V           SF     + T         V+  GG++ D  +WD+ T +  ++AKN+  D  L + VPVW  A+   P  +A        L+ GTA+  IR+YDT A RRP     +G+  ITA+ V G      +  I GD AG + A+D+R  +   RY  P G ++R  A+HPTLP  A+VGLDR+  V+ V          +   Y KQR + VLF DEG +A P   + +A A
Sbjct:    1 MRVIIADETGLVKNVAVEAATATVLAGTA-QSRSTSARYLAWSEKD---------VVVARTNGDVDCVGV-HGGS-----PWSFT------REGSPVGM-------GVIAEYGS---IVRCNTAGHVEVVHPLHVKPNPPSFNVGNDIQTLRVNPFASNVIGIGGKERDANLWDLQTQKAIFKAKNITHD-NLDMRVPVWVKAMTFLPPTSAAGGSEGHRLVVGTAYHQIRIYDTSAKRRPVSETSFGDLPITAVLVQG------NRVIFGDTAGNVNAIDMRTFKHLGRYHGPVG-SIRDLALHPTLPYVASVGLDRMVHVHHVE-----TRKAVHTYYAKQRLNAVLFTDEGIKAAPVAPVVKAEA 323          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|153927 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZDI3_9STRA6.210e-277100.00Quinon protein alcohol dehydrogenase-like superfam... [more]
D8LFI9_ECTSI1.270e-6539.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2D4BHJ4_PYTIN2.560e-3634.48Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A6G0XIB0_9STRA5.480e-3636.08Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485L5S9_9STRA5.950e-3634.66Aste57867_16148 protein n=2 Tax=Aphanomyces stella... [more]
A0A024TXS7_9STRA9.770e-3634.68Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
D8LW75_BLAHO2.590e-3432.76Uncharacterized protein n=1 Tax=Blastocystis homin... [more]
A0A1V9YET1_9STRA8.940e-3333.99Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
M4BCG2_HYAAE1.040e-3233.42Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
W4G1J7_9STRA1.180e-3034.24Uncharacterized protein n=6 Tax=Aphanomyces astaci... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_111contigContig_111:499814..501010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|153927|gw1.111.89.1
BRITEko00000,ko03009
KEGG koko:K14841
GOsGO:0001701,GO:0001824,GO:0001825,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009653,GO:0009790,GO:0009792,GO:0009987,GO:0016070,GO:0019725,GO:0022613,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0042254,GO:0042273,GO:0042592,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046716,GO:0048646,GO:0048856,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
Preferred nameWDR74
Descriptionribosomal large subunit biogenesis
COG categoryD
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3881@1|root,KOG3881@2759|Eukaryota
Evalue2.08e-66
Seed ortholog2880.D8LFI9
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-04_002020.1
TranscriptId154249
TrackFilteredModels1
ProteinId153927
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153927gene_11927Tribonema minus UTEX_B_3156 geneContig_111 499814..501010 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11927_1exon_11927_1Tribonema minus UTEX_B_3156 exonContig_111 499814..501010 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11927CDS_11927Tribonema minus UTEX_B_3156 CDSContig_111 499814..501010 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153927Trimin1|153927|gw1.111.89.1Tribonema minus UTEX_B_3156 polypeptideContig_111 499814..501010 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11927 ID=mRNA_11927|Name=jgi.p|Trimin1|153927|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1197bp|location=Sequence derived from alignment at Contig_111:499814..501010- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGTGTTGACGGCAGACGAGACAGGCCTCGTCAAAGTTTGGCAGGT
GGAGTCGAGAAAACTTCTGGTCACACACGGCCTGGGGCACCAATCACGTG
TGAGGGGCGTAAGAGGCCTGTGCTGGGGTCTGGCCAGCGATGGCACCTCC
CCCGACTACTCTCGCGTGCATGTTGGCCGCGAAAACGGGGTTGTCGAGGA
CTGGTCTGTCTCTCACACAGCAGCCAAGGGCAAAAAGTTGCCAGCATCTG
CCACTGTCAACCAAAGAAGCCAAAGAGAGGGGTGTCCAGCGAGCATCGTG
AGCTTGCACGCTCTCCCTGGAACAGCCTCCGAAGCGGACAGCCCTCCCAC
CATGGTCGCCTGCAGTGCGACAGGAGAGGTGCGCGTAGCCCCCTGTGACG
CGGCAGCGGGCGAGGGCAGCAGCTTCAAGGCGCCTGCGCCAGTCCACACG
GCCATAGGCAGGGGCGGCGTGCTCGCCACGGGAGGGCAGGACAACGACAT
CAAGGTGTGGGACGTGGCTACAGGCCAATGCACGTGGCGCGCCAAGAACG
TGCCCATGGACGCCAAGCTGCAGCTGTCCGTGCCCGTGTGGCCGAGCGCG
CTCGCGCCGCTGCGCGCTGCACACGAGGACCCCGCGCTCACCGCCCTCCT
CGCCGGCACCGCGCACCGGCACATCCGCCTGTACGACACGCGCGCCGCGC
GCCGCCCGCGCCAGACCATCGACTACGGCGAGCACCGCATCACCGCGCTG
TGCGTCATCGGCGGCGGCGGCGGCAGCGCGCACACCGCCATCGTCGGCGA
CGCCGCGGGCGAGCTCACTGCGCTCGACCTGCGCGCGCTGCGGCGGCGGC
GCCGCTACGGCGAGCCCGGCGGCGGCGCGGTGCGCGCGTTCGCGGTGCAC
CCCACACTCCCCGTCTTCGCGGCCGTCGGCCTCGACCGCGTCTGCCGCGT
GTACGACGTCAGCGGCGGCGGCGGCGGCGGCGGCGCGCCGCTCGCGGCGC
TGTACCTCAAGCAGCGCGCGAGCCGCGTGCTGTTCTGCGACGAGGGGCGA
GCGACGCCCGACGGCGCCATCGACAGAGCCGCCGCGGCGCTGGAGGGCGG
CGACGATGGCTGGGGCAGCGCGGAGGAGTACGAGATGGGGGCGGGGTCCT
CGGAGGAGGGGGACGCGGAGGAGTCGGAGATGGAGTCAGAGGGCGAC
back to top

protein sequence of jgi.p|Trimin1|153927

>Trimin1|153927|gw1.111.89.1 ID=Trimin1|153927|gw1.111.89.1|Name=jgi.p|Trimin1|153927|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=399bp
MRVLTADETGLVKVWQVESRKLLVTHGLGHQSRVRGVRGLCWGLASDGTS
PDYSRVHVGRENGVVEDWSVSHTAAKGKKLPASATVNQRSQREGCPASIV
SLHALPGTASEADSPPTMVACSATGEVRVAPCDAAAGEGSSFKAPAPVHT
AIGRGGVLATGGQDNDIKVWDVATGQCTWRAKNVPMDAKLQLSVPVWPSA
LAPLRAAHEDPALTALLAGTAHRHIRLYDTRAARRPRQTIDYGEHRITAL
CVIGGGGGSAHTAIVGDAAGELTALDLRALRRRRRYGEPGGGAVRAFAVH
PTLPVFAAVGLDRVCRVYDVSGGGGGGGAPLAALYLKQRASRVLFCDEGR
ATPDGAIDRAAAALEGGDDGWGSAEEYEMGAGSSEEGDAEESEMESEGD
back to top

mRNA from alignment at Contig_111:499814..501010-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11927 ID=mRNA_11927|Name=jgi.p|Trimin1|153927|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1197bp|location=Sequence derived from alignment at Contig_111:499814..501010- (Tribonema minus UTEX_B_3156 )
ATGCGTGTGTTGACGGCAGACGAGACAGGCCTCGTCAAAGTTTGGCAGGT GGAGTCGAGAAAACTTCTGGTCACACACGGCCTGGGGCACCAATCACGTG TGAGGGGCGTAAGAGGCCTGTGCTGGGGTCTGGCCAGCGATGGCACCTCC CCCGACTACTCTCGCGTGCATGTTGGCCGCGAAAACGGGGTTGTCGAGGA CTGGTCTGTCTCTCACACAGCAGCCAAGGGCAAAAAGTTGCCAGCATCTG CCACTGTCAACCAAAGAAGCCAAAGAGAGGGGTGTCCAGCGAGCATCGTG AGCTTGCACGCTCTCCCTGGAACAGCCTCCGAAGCGGACAGCCCTCCCAC CATGGTCGCCTGCAGTGCGACAGGAGAGGTGCGCGTAGCCCCCTGTGACG CGGCAGCGGGCGAGGGCAGCAGCTTCAAGGCGCCTGCGCCAGTCCACACG GCCATAGGCAGGGGCGGCGTGCTCGCCACGGGAGGGCAGGACAACGACAT CAAGGTGTGGGACGTGGCTACAGGCCAATGCACGTGGCGCGCCAAGAACG TGCCCATGGACGCCAAGCTGCAGCTGTCCGTGCCCGTGTGGCCGAGCGCG CTCGCGCCGCTGCGCGCTGCACACGAGGACCCCGCGCTCACCGCCCTCCT CGCCGGCACCGCGCACCGGCACATCCGCCTGTACGACACGCGCGCCGCGC GCCGCCCGCGCCAGACCATCGACTACGGCGAGCACCGCATCACCGCGCTG TGCGTCATCGGCGGCGGCGGCGGCAGCGCGCACACCGCCATCGTCGGCGA CGCCGCGGGCGAGCTCACTGCGCTCGACCTGCGCGCGCTGCGGCGGCGGC GCCGCTACGGCGAGCCCGGCGGCGGCGCGGTGCGCGCGTTCGCGGTGCAC CCCACACTCCCCGTCTTCGCGGCCGTCGGCCTCGACCGCGTCTGCCGCGT GTACGACGTCAGCGGCGGCGGCGGCGGCGGCGGCGCGCCGCTCGCGGCGC TGTACCTCAAGCAGCGCGCGAGCCGCGTGCTGTTCTGCGACGAGGGGCGA GCGACGCCCGACGGCGCCATCGACAGAGCCGCCGCGGCGCTGGAGGGCGG CGACGATGGCTGGGGCAGCGCGGAGGAGTACGAGATGGGGGCGGGGTCCT CGGAGGAGGGGGACGCGGAGGAGTCGGAGATGGAGTCAGAGGGCGAC
back to top

Coding sequence (CDS) from alignment at Contig_111:499814..501010-

>mRNA_11927 ID=mRNA_11927|Name=jgi.p|Trimin1|153927|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1197bp|location=Sequence derived from alignment at Contig_111:499814..501010- (Tribonema minus UTEX_B_3156 )
ATGCGTGTGTTGACGGCAGACGAGACAGGCCTCGTCAAAGTTTGGCAGGT
GGAGTCGAGAAAACTTCTGGTCACACACGGCCTGGGGCACCAATCACGTG
TGAGGGGCGTAAGAGGCCTGTGCTGGGGTCTGGCCAGCGATGGCACCTCC
CCCGACTACTCTCGCGTGCATGTTGGCCGCGAAAACGGGGTTGTCGAGGA
CTGGTCTGTCTCTCACACAGCAGCCAAGGGCAAAAAGTTGCCAGCATCTG
CCACTGTCAACCAAAGAAGCCAAAGAGAGGGGTGTCCAGCGAGCATCGTG
AGCTTGCACGCTCTCCCTGGAACAGCCTCCGAAGCGGACAGCCCTCCCAC
CATGGTCGCCTGCAGTGCGACAGGAGAGGTGCGCGTAGCCCCCTGTGACG
CGGCAGCGGGCGAGGGCAGCAGCTTCAAGGCGCCTGCGCCAGTCCACACG
GCCATAGGCAGGGGCGGCGTGCTCGCCACGGGAGGGCAGGACAACGACAT
CAAGGTGTGGGACGTGGCTACAGGCCAATGCACGTGGCGCGCCAAGAACG
TGCCCATGGACGCCAAGCTGCAGCTGTCCGTGCCCGTGTGGCCGAGCGCG
CTCGCGCCGCTGCGCGCTGCACACGAGGACCCCGCGCTCACCGCCCTCCT
CGCCGGCACCGCGCACCGGCACATCCGCCTGTACGACACGCGCGCCGCGC
GCCGCCCGCGCCAGACCATCGACTACGGCGAGCACCGCATCACCGCGCTG
TGCGTCATCGGCGGCGGCGGCGGCAGCGCGCACACCGCCATCGTCGGCGA
CGCCGCGGGCGAGCTCACTGCGCTCGACCTGCGCGCGCTGCGGCGGCGGC
GCCGCTACGGCGAGCCCGGCGGCGGCGCGGTGCGCGCGTTCGCGGTGCAC
CCCACACTCCCCGTCTTCGCGGCCGTCGGCCTCGACCGCGTCTGCCGCGT
GTACGACGTCAGCGGCGGCGGCGGCGGCGGCGGCGCGCCGCTCGCGGCGC
TGTACCTCAAGCAGCGCGCGAGCCGCGTGCTGTTCTGCGACGAGGGGCGA
GCGACGCCCGACGGCGCCATCGACAGAGCCGCCGCGGCGCTGGAGGGCGG
CGACGATGGCTGGGGCAGCGCGGAGGAGTACGAGATGGGGGCGGGGTCCT
CGGAGGAGGGGGACGCGGAGGAGTCGGAGATGGAGTCAGAGGGCGAC
back to top