Trimin1|350118|estExt_Genemark1.C_Ctg_560076 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|350118
Unique NameTrimin1|350118|estExt_Genemark1.C_Ctg_560076
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length633
Homology
BLAST of jgi.p|Trimin1|350118 vs. uniprot
Match: A0A836CAC6_9STRA (Nsp1-like C-terminal region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAC6_9STRA)

HSP 1 Score: 443 bits (1139), Expect = 9.880e-145
Identity = 632/632 (100.00%), Postives = 632/632 (100.00%), Query Frame = 0
Query:    1 MSFFGTPAPAASGAAPSTGFXXXXXXXXXXXXXXXXXXSXXXXXXXXXAPAGGSLFGAXXXXXXXGGXXXXXXXXXXXXXXXXXXXGGLYGTASAPSXXXXXXXAAAPXXXXXXXXXXXXXSFGGAPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAGFXAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAAALPAQAAPPVEYRNMTVEEXXXXXXXXXXXXXAIVSKWNEQLEEDASKFKNQAEKISQWDQRLRGNQKDIATLADQVQRLLQTQEDLDSSLSAVKSNQSELDTSLAQLEGENKXXXXXXXXXGEMDXXXXXXXXXXXXXXXXXXXXXGESNXXXXXXXXXXXXXXARELYERHRAQLDNADMNLGTECNAFLIATMQVQGLYERHRAQQLDDADVKEXXXXXXXXXXXXXXXXXERTHRTAQALNEELDAMLGSLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRHAEDKSTMTTVVETLNMHQHMLHRLEVXXXXXXXXXXXXXLESNSQKLDQDLASVGQQLKRVSIG 632
            MSFFGTPAPAASGAAPSTGFXXXXXXXXXXXXXXXXXXSXXXXXXXXXAPAGGSLFGAXXXXXXXGGXXXXXXXXXXXXXXXXXXXGGLYGTASAPSXXXXXXXAAAPXXXXXXXXXXXXXSFGGAPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAGFXAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAAALPAQAAPPVEYRNMTVEEXXXXXXXXXXXXXAIVSKWNEQLEEDASKFKNQAEKISQWDQRLRGNQKDIATLADQVQRLLQTQEDLDSSLSAVKSNQSELDTSLAQLEGENKXXXXXXXXXGEMDXXXXXXXXXXXXXXXXXXXXXGESNXXXXXXXXXXXXXXARELYERHRAQLDNADMNLGTECNAFLIATMQVQGLYERHRAQQLDDADVKEXXXXXXXXXXXXXXXXXERTHRTAQALNEELDAMLGSLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRHAEDKSTMTTVVETLNMHQHMLHRLEVXXXXXXXXXXXXXLESNSQKLDQDLASVGQQLKRVSIG
Sbjct:    1 MSFFGTPAPAASGAAPSTGFXXXXXXXXXXXXXXXXXXSXXXXXXXXXAPAGGSLFGAXXXXXXXGGXXXXXXXXXXXXXXXXXXXGGLYGTASAPSXXXXXXXAAAPXXXXXXXXXXXXXSFGGAPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAGFXAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAAALPAQAAPPVEYRNMTVEEXXXXXXXXXXXXXAIVSKWNEQLEEDASKFKNQAEKISQWDQRLRGNQKDIATLADQVQRLLQTQEDLDSSLSAVKSNQSELDTSLAQLEGENKXXXXXXXXXGEMDXXXXXXXXXXXXXXXXXXXXXGESNXXXXXXXXXXXXXXARELYERHRAQLDNADMNLGTECNAFLIATMQVQGLYERHRAQQLDDADVKEXXXXXXXXXXXXXXXXXERTHRTAQALNEELDAMLGSLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRHAEDKSTMTTVVETLNMHQHMLHRLEVXXXXXXXXXXXXXLESNSQKLDQDLASVGQQLKRVSIG 632          
BLAST of jgi.p|Trimin1|350118 vs. uniprot
Match: D7FRT4_ECTSI (Nsp1_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT4_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.060e-11
Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 0
Query:  274 QAAPPVEYRNMTVEEXXXXXXXXXXXXXAIVSKWNEQLEEDASKFKNQAEKISQWDQRLRGNQKDIATLADQVQRLLQTQEDLDSSLSAVKSNQSELDTSLAQLEGE 380
            Q  PP +Y NMTVEE              IV+ WN +L++DA+ F N+A K+S WD  LR  Q ++ +LAD VQ+L+  Q+DL  S+ A++  QS LD +L QLEG+
Sbjct:  154 QEQPPEQYMNMTVEE--------------IVNSWNVELDQDATTFTNEAVKVSDWDGVLRETQSELFSLADDVQKLVLGQQDLARSMKAIEGEQSHLDKTLDQLEGQ 246          
BLAST of jgi.p|Trimin1|350118 vs. uniprot
Match: A0A485LLL1_9STRA (Aste57867_23017 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LLL1_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.080e-8
Identity = 47/116 (40.52%), Postives = 66/116 (56.90%), Query Frame = 0
Query:  267 PAAALPA----QAAPPVEYRNMTVEEXXXXXXXXXXXXXAIVSKWNEQLEEDASKFKNQAEKISQWDQRLRGNQKDIATLADQVQRLLQTQEDLDSSLSAVKSNQSELDTSLAQLE 378
            PAA LP     Q  PP EY + TVE+              I++ W+EQLE  A  F N+A ++S WD  L  NQK +  LA  V+RL   Q+DL+++L  + S Q+EL+++L QLE
Sbjct:  301 PAATLPPATKEQDKPPAEYMDKTVED--------------IINMWSEQLESHAMAFTNEAVRVSHWDTELMENQKKLGELAIDVRRLQVAQKDLNANLDTITSYQTELESTLEQLE 402          
BLAST of jgi.p|Trimin1|350118 vs. uniprot
Match: A0A6H5JT70_9PHAE (Nsp1_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT70_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 3.430e-8
Identity = 37/78 (47.44%), Postives = 55/78 (70.51%), Query Frame = 0
Query:  303 IVSKWNEQLEEDASKFKNQAEKISQWDQRLRGNQKDIATLADQVQRLLQTQEDLDSSLSAVKSNQSELDTSLAQLEGE 380
            IV+ WN +L++DA+ F N+A K+S WD  LR  Q ++ +LAD VQ+L+  Q+DL  S+ A++  QS LD +L QLEG+
Sbjct:  325 IVNSWNVELDQDATTFTNEAVKVSDWDVVLRETQSELFSLADDVQKLVLGQQDLARSMKAIEGEQSHLDKTLDQLEGQ 402          
BLAST of jgi.p|Trimin1|350118 vs. uniprot
Match: A0A397BL75_9STRA (Nsp1_C domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BL75_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 6.580e-8
Identity = 41/109 (37.61%), Postives = 63/109 (57.80%), Query Frame = 0
Query:  270 ALPAQAAPPVEYRNMTVEEXXXXXXXXXXXXXAIVSKWNEQLEEDASKFKNQAEKISQWDQRLRGNQKDIATLADQVQRLLQTQEDLDSSLSAVKSNQSELDTSLAQLE 378
            A+  Q  PP EY + TVE+              I++ W+EQLE  A+ F N+A ++S WD  L  NQ  +  LA  V+RL   Q++L+++L  + S Q+EL+++L QLE
Sbjct:    6 AVTLQDKPPAEYMDKTVED--------------IINMWSEQLESHATAFTNEAVRVSHWDTELMQNQTKLGELAIDVRRLQVAQKELNANLDTITSYQTELESTLEQLE 100          
BLAST of jgi.p|Trimin1|350118 vs. uniprot
Match: W4GW85_9STRA (Nsp1_C domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GW85_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 5.270e-7
Identity = 41/109 (37.61%), Postives = 63/109 (57.80%), Query Frame = 0
Query:  270 ALPAQAAPPVEYRNMTVEEXXXXXXXXXXXXXAIVSKWNEQLEEDASKFKNQAEKISQWDQRLRGNQKDIATLADQVQRLLQTQEDLDSSLSAVKSNQSELDTSLAQLE 378
            A+  Q  PP EY + TVE+              I++ W+EQLE  A+ F N+A ++S WD  L  NQ  +  LA  V+RL   Q++L+++L  + S Q+EL+++L QLE
Sbjct:  291 AVTLQDKPPAEYMDKTVED--------------IINMWSEQLESHATAFTNEAVRVSHWDTELMQNQTKLGELAIDVRRLQVAQKELNANLDTITSYQTELESTLEQLE 385          
BLAST of jgi.p|Trimin1|350118 vs. uniprot
Match: A0A024U9L2_9STRA (Nsp1_C domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U9L2_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 8.890e-6
Identity = 38/102 (37.25%), Postives = 59/102 (57.84%), Query Frame = 0
Query:  277 PPVEYRNMTVEEXXXXXXXXXXXXXAIVSKWNEQLEEDASKFKNQAEKISQWDQRLRGNQKDIATLADQVQRLLQTQEDLDSSLSAVKSNQSELDTSLAQLE 378
            PP EY +  VE+              I++ W+EQLE  A+ F N+A ++S WD  L  NQ  +  LA  V+RL   Q++L+++L  + S Q+EL+++L QLE
Sbjct:  319 PPAEYMDKKVED--------------IINMWSEQLESHATTFTNEAVRVSHWDTELMQNQTKLGELAIDVRRLQVAQKELNANLDTITSYQTELESTLEQLE 406          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350118 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A836CAC6_9STRA9.880e-145100.00Nsp1-like C-terminal region-domain-containing prot... [more]
D7FRT4_ECTSI1.060e-1143.93Nsp1_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A485LLL1_9STRA1.080e-840.52Aste57867_23017 protein n=1 Tax=Aphanomyces stella... [more]
A0A6H5JT70_9PHAE3.430e-847.44Nsp1_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A397BL75_9STRA6.580e-837.61Nsp1_C domain-containing protein n=3 Tax=Aphanomyc... [more]
W4GW85_9STRA5.270e-737.61Nsp1_C domain-containing protein n=2 Tax=Aphanomyc... [more]
A0A024U9L2_9STRA8.890e-637.25Nsp1_C domain-containing protein n=2 Tax=Aphanomyc... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 421..448
NoneNo IPR availableCOILSCoilCoilcoord: 496..530
NoneNo IPR availableGENE3D1.20.5.170coord: 326..386
e-value: 5.4E-9
score: 37.9
IPR007758Nucleoporin, NSP1-like, C-terminalPFAMPF05064Nsp1_Ccoord: 286..382
e-value: 3.5E-18
score: 65.5
IPR026010Nucleoporin NSP1/NUP62PANTHERPTHR12084NUCLEAR PORE GLYCOPROTEIN P62-RELATEDcoord: 4..384

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_56contigContig_56:794624..806249 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350118mRNA_14127Tribonema minus UTEX_B_3156 mRNAContig_56 794550..806266 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|350118|estExt_Genemark1.C_Ctg_560076 ID=Trimin1|350118|estExt_Genemark1.C_Ctg_560076|Name=jgi.p|Trimin1|350118|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=633bp
MSFFGTPAPAASGAAPSTGFSFASSAPAPAATSTFSFSSAPAPAAAGAAP
AGGSLFGATAPAPAGGGGAAGGAFGGAAPAPAAGGGGGLYGTASAPSGGG
GLFGAAAPAPAAAGGGGGGAFSFGGAPAAAAPAPAAPARSQCVAAAAVGG
GLRARSTSAFSFGGAPAPAAPAPAAAAPAPATSGGLSLAGFGAFGAASAV
PAATSTATSTAAAPAPASAGLSFGAAAPAPAAAAGLVGAAPAPAPATSTA
LSFGAPAPAPAAAAGAPAAALPAQAAPPVEYRNMTVEEAAPPVEYRNMTV
EAIVSKWNEQLEEDASKFKNQAEKISQWDQRLRGNQKDIATLADQVQRLL
QTQEDLDSSLSAVKSNQSELDTSLAQLEGENKLDTSLAQLEGEMDSSLSA
VKSNQSELDTSLAQLEGESNQSELDTSLAQLEGEARELYERHRAQLDNAD
MNLGTECNAFLIATMQVQGLYERHRAQQLDDADVKELYERHRAQQLDDAD
LERERTHRTAQALNEELDAMLGSLNELDAMLGSLEEVVTSLNESCEVVTS
LNDSFEVVTSLNDSFVRHAEDKSTMTTVVETLNMHQHMLHRLEVVRILNT
HQHMLHWLESNSQKLDQDLASVGQQLKRVSIG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007758Nucleoporin_NSP1_C
IPR026010NSP1/NUP62