mRNA_7334 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350092
Unique NamemRNA_7334
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|350092 vs. uniprot
Match: A0A835YYW2_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYW2_9STRA)

HSP 1 Score: 605 bits (1560), Expect = 3.390e-218
Identity = 319/319 (100.00%), Postives = 319/319 (100.00%), Query Frame = 1
Query:    1 MAAKKPAKKQAATKISLRGFGGTAAKPSKEAAAAGSAGDGTLIRDASTLALYQWLDSAGVDMRKIAIADFGGLRGVMALEDIKKGQCIIEVPAKSAIDLGDEGTPGSPDLTTTDFFTEAELAMLQWPPVVDETRRRIALCEKLYEDVIKMQVQMGSAFNGKQVTVEDLKWAVFIVVSRVLTVVRGDDVRFAKLLIPGIDMFNHDASSPHVLTGRMAAGASLKVLAGADVKAGTQVNIAYSGGVPRSDRFIQDYGFLDAAGCSEADAILLAGSLGKRYEAQLRETTAAEDQALLEGGTLSPKEALAVQFRLALKTGTIRK 957
            MAAKKPAKKQAATKISLRGFGGTAAKPSKEAAAAGSAGDGTLIRDASTLALYQWLDSAGVDMRKIAIADFGGLRGVMALEDIKKGQCIIEVPAKSAIDLGDEGTPGSPDLTTTDFFTEAELAMLQWPPVVDETRRRIALCEKLYEDVIKMQVQMGSAFNGKQVTVEDLKWAVFIVVSRVLTVVRGDDVRFAKLLIPGIDMFNHDASSPHVLTGRMAAGASLKVLAGADVKAGTQVNIAYSGGVPRSDRFIQDYGFLDAAGCSEADAILLAGSLGKRYEAQLRETTAAEDQALLEGGTLSPKEALAVQFRLALKTGTIRK
Sbjct:    1 MAAKKPAKKQAATKISLRGFGGTAAKPSKEAAAAGSAGDGTLIRDASTLALYQWLDSAGVDMRKIAIADFGGLRGVMALEDIKKGQCIIEVPAKSAIDLGDEGTPGSPDLTTTDFFTEAELAMLQWPPVVDETRRRIALCEKLYEDVIKMQVQMGSAFNGKQVTVEDLKWAVFIVVSRVLTVVRGDDVRFAKLLIPGIDMFNHDASSPHVLTGRMAAGASLKVLAGADVKAGTQVNIAYSGGVPRSDRFIQDYGFLDAAGCSEADAILLAGSLGKRYEAQLRETTAAEDQALLEGGTLSPKEALAVQFRLALKTGTIRK 319          
BLAST of jgi.p|Trimin1|350092 vs. uniprot
Match: A0A7S4B569_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B569_CHRCT)

HSP 1 Score: 184 bits (466), Expect = 3.540e-51
Identity = 138/347 (39.77%), Postives = 177/347 (51.01%), Query Frame = 1
Query:    1 MAAKKPAKKQAATKISLRGFGGTA----AKPSKEAAAAGSAGDGTLIRDASTLALYQWLDSAGVDMRKIAIADFGGLRGVMALEDIKKGQCIIEVPAKSAIDLGDEG-----------------------------TPGSPDLTTTDFFTEAELAMLQWPPVVDETRRRIALCEKLYEDVIKMQVQMGSAFNGKQVTVEDLKWAVFIVVSRVLTVVRGDDVRFAKLLIPGIDMFNHDASSPHVLTGRMAAGASLKVLAGADVKAGTQVNIAYSGGVPRSDRFIQDYGFLDAAGCSEADAILLAGSLGKRYEAQLRETTAAEDQALLEGG-TLSPKEALAVQFRLALK 939
            +A KK     A TKIS +GFG       AKP +          GTL+ D +  AL  WL + G  + K+ IADF GLRGVMA+++I+ G+ II +PA  A+DLG +G                             +P SPDL T DFF+E EL MLQWPP+V E R R A   K+                     + +LKWA +IV+SRVLTV+ G D    KLLIP IDMFNH ASS H LTGR     SL+V+AG  V AG Q+ I Y      +   +  YGF+D    + AD  L+A  +       L+ T+A  D+ +L    TL   E LA+Q RLALK
Sbjct:   83 LAQKKKGGNGAPTKISAKGFGSAVVRAKAKPGEV---------GTLLTDPAYEALRSWLSAEGASLDKVGIADFDGLRGVMAMQNIQAGEEIISIPANCALDLGTQGDDPIPPALQLLSAIATDDGRRQAYFEVLPSPDSPDLCTPDFFSEKELQMLQWPPIVREVRARSAALRKVLGSAAPTGDTRREEMAVAGGRLRELKWAAWIVLSRVLTVL-GPDGAGHKLLIPFIDMFNHRASSRHYLTGR--TDRSLRVVAGTRVAAGEQIYIVYGTEATSNAELLAHYGFIDPTAAA-ADERLVA--MNPDAVPALQATSAEADKEMLSSEPTLPRNEQLALQLRLALK 414          
BLAST of jgi.p|Trimin1|350092 vs. uniprot
Match: R1C564_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C564_EMIHU)

HSP 1 Score: 174 bits (441), Expect = 3.260e-45
Identity = 122/314 (38.85%), Postives = 162/314 (51.59%), Query Frame = 1
Query:  118 GTLIRDASTLALYQWLDSAGVDMRKIAIADFGGLRGVMALEDIKKGQCIIEVPAKSAIDLGDEGT------------------------------PGSPDLTTTDFFTEAELAMLQWPPVVDETRRRIALCEKLYEDVIKMQVQMGSAFNGK-----QVTVEDLKWAVFIVVSRVLTVVRGDDVRFAKLLIPGIDMFNHDASSPHVLTGRMAAGASLKVLAGADVKAGTQVNIAYSGGVPRSDRFIQDYGFLDAAGCSEADAILLAGSLGKRYEAQLRETTAAEDQALLEGGTLSPKEALAVQFRLALKTGTIR 954
            G  + D +  +L  WL++ G  +  +AIADFGGLRG+MA   I  G+ I+ VPA+ A+DLG +G                               P SPDL T DF+ EA L + QWPP+ +E RRR A  E            +G    G+     +    +L+WAV++V SRVLTV +G D R  KLLIP +DMFNH ASSPH L GR      L+VLAGA V AG QV I Y      +  F+  YGFLD A  +  +A+L A    +     L++T  A+D+A+L        EALA+  R+ALK    R
Sbjct:   33 GVALVDPAYESLRGWLEAEGAKLGAVAIADFGGLRGLMATRRIDAGEEIVAVPARCAVDLGAQGDDPLPAARALLEARARDAGGAREPYYATLPQPDSPDLCTPDFWGEATLELCQWPPLAEEVRRRAADIESA----------LGGGGEGEGGAAGEAARRELQWAVWLVQSRVLTV-QGADGRGHKLLIPWLDMFNHRASSPHRLAGR--TDGMLRVLAGAPVGAGEQVEIVYGTSGTSNAEFLGHYGFLDPAAAAADEALLRAHPHARPL---LKQTALADDEAVLAATEPGSHEALALGLRVALKRAMAR 330          
BLAST of jgi.p|Trimin1|350092 vs. uniprot
Match: A0A0M0JVN2_9EUKA (Histone-lysine n-methyltransferase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JVN2_9EUKA)

HSP 1 Score: 165 bits (418), Expect = 1.020e-44
Identity = 127/346 (36.71%), Postives = 176/346 (50.87%), Query Frame = 1
Query:   25 KQAATKISLRGFGGTAAKPSKEAAAAGSAGDGTLIRDASTLALYQWLDSAGV-DMRKIAIADF-GGLRGVMALEDIKKGQCIIEVPAKSAIDLGDEGT------------------------------PGSPDLTTTDFFTEAELAMLQWPPVVDETRRRIALCEKLYEDVIKMQVQMGSAFNGKQVTVEDLKWAVFIVVSRVLTVVRGDDVRFAKLLIPGIDMFNHDASSPHVLTGRMAAGASLKVLAGADVKAGTQVNIAYSGGVPRSDRFIQDYGFLDAAGCSEADAILLAGSLGKRYEAQLRETTAAEDQALLEGGTLSP---KEALAVQFRLALKTGTIRK 957
            K+   K+  RGFG  AA P+           G L+ +    ALY+WL S+ + +++K+ IA+F GGLRGVMAL+DI  G+ I+ +PA  AIDLG +G                               P + DL T DFF+E EL MLQWPP+V ETR+R A   K   +                  + +L+WAV+ ++SRVLTV    D+   KLLIP IDMFNH   S H LTGR      L+V+AGA VKAG Q+ I Y      +  F+  YGF+D      AD  LL   +       L+ +T A+D+A L+    +    +E LA+  R+ALK   +++
Sbjct:   32 KKPPAKLGGRGFG--AAPPTS----------GKLLDEPRYTALYEWLRSSPLTNLKKVGIAEFEGGLRGVMALQDIMAGEEIVAIPATLAIDLGADGVDPLPAARRFLGEMHGDTDGEYAAYWAVLPPPDAADLCTPDFFSEKELQMLQWPPLVVETRKRSAQLRKALGERAPNSGTPNDVMAVAGGNMRELRWAVWTILSRVLTVADPTDLGGHKLLIPLIDMFNHRGGSKHYLTGR--TDGMLRVVAGATVKAGEQIFIKYGTDQTSNVEFVAHYGFVDPK-AETADRTLLR--MQPAMVPALKHSTLAQDEAELDALKAADGPYQEQLALGLRMALKRAALKE 360          
BLAST of jgi.p|Trimin1|350092 vs. uniprot
Match: A0A7S1D8S2_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D8S2_CYCTE)

HSP 1 Score: 160 bits (405), Expect = 1.570e-42
Identity = 117/307 (38.11%), Postives = 155/307 (50.49%), Query Frame = 1
Query:  199 IADFGGLRGVMALEDIKKGQCIIEVPAKSAIDLGDEG----TPGSPDLT-----------------------------------TTDFFTEAELAMLQWPPVVDETRRRIALCEKLYEDVIKMQVQMGSAFNGKQVTVEDLKWAVFIVVSRVLTVVRG-DDVRFAKLLIPGIDMFNHDASSPHVLTGRMAAGASLKVLAGADVKAGTQVNIAYSGGVPRSDRFIQDYGFLDAAGCSEADAILLAGS-LGKRYEAQ-------------------LRETTAAEDQALLEGGTLSPKEALAVQFRLALK 939
            + D G LRGV+AL+DIKKG  +I +P + AI+LG EG     PG   L                                    +TDFF++  ++ LQ P +V+ET+ R     + ++  I          +G  ++ E L+WAV+++ SRVLTV    DD R  +LLIP +DM NHD  SPHVLTGR   G  LKV+AGA V AG Q+NI Y GGV  +DRF+QDYGFLD     EA   L+A   LGKR   +                   L  TT  EDQA+L   T S     A+Q+R+ +K
Sbjct:   81 LPDGGSLRGVVALKDIKKGDVLIRIPYELAINLGQEGGDPTVPGRDLLRMYCEVMDAQSAELHDPERLAYFRMLPEFLGDDCRGSTDFFSDEAMSALQSPLIVEETKHRQVRVSRRFDQDIAADASFPKWIDGSALSEEHLRWAVWLITSRVLTVQGAVDDNRSYRLLIPFLDMCNHDRGSPHVLTGRAVPGGDLKVVAGAPVAAGDQINIGYGGGVAGNDRFLQDYGFLD----KEAGFNLVALQILGKRRMVEGVVAGRTMPATDRAAALKSLHRTTVEEDQAMLLE-TPSGDVRSALQYRIGVK 382          
BLAST of jgi.p|Trimin1|350092 vs. uniprot
Match: A0A6U3YH37_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3YH37_9STRA)

HSP 1 Score: 160 bits (405), Expect = 6.320e-42
Identity = 108/287 (37.63%), Postives = 151/287 (52.61%), Query Frame = 1
Query:   49 LRGFGGTAAKPSKEAAAAGSAGDGTLIRDASTLALYQWLDSAGVDMRKIAIADF--GGLRGVMALEDIKKGQCIIEVPAKSAIDLGDEGTP-----------------------------------GSPDLTTTDFFTEAELAMLQWPPVVDETRRRIALCEKLYEDVIKMQVQ---MGSAFNGKQVTVEDLKWAVFIVVSRVLTVVRGDDVRFAKLLIPGIDMFNHDASSPHVLTGRMAAGASLKVLAGADVKAGTQVNIAYSGGVPRSDRFIQDYGFLDAAGCSE 789
            L+GFGG  A  S E+A  G+A      +  S     +  +  G +++++A+A F    +RG++AL DIKKG  I+++P + A+DLG E +                                    G   LT+TDFF+   L  LQ P +V+ET  R    ++ YE  +   +Q        N    T++ L+WAV+++ SRVLTV   D     +L+IP +DM NHD  S HVLTGR   GA LKVLAG +VKAG Q+ I+Y GG+  +DRFIQDYGFLD  G  E
Sbjct:   82 LKGFGGGTATSSDESAT-GAAKIDKSAKALSFYNYIETNEQGGNNLKRVALATFPPANIRGLVALRDIKKGDAILDIPYELALDLGVENSDPTLPAVTLLQKYCTYLNSDGSTIDGPYMELLPEYKGRDSLTSTDFFSAEALEKLQHPLIVEETLNRREKTKQRYESDVMPNIQNFQWKDGSNSAAATLDHLQWAVWLITSRVLTVQTTDTKPANRLMIPLLDMCNHDRHSQHVLTGRAIPGARLKVLAGCNVKAGEQILISYGGGLEGNDRFIQDYGFLDVYGKDE 367          
BLAST of jgi.p|Trimin1|350092 vs. uniprot
Match: L1IZH7_GUITC (SET domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IZH7_GUITC)

HSP 1 Score: 150 bits (379), Expect = 2.380e-39
Identity = 105/300 (35.00%), Postives = 153/300 (51.00%), Query Frame = 1
Query:    1 MAAKKPAKKQAATKISLRGFGGTAAKPSKEAAAAGSAGDGTLIRDASTLALYQWLDSAGVDMRKIAIADFGGLRGVMALEDIKKGQCIIEVPAKSAIDLGDEGT-------------------------------PGSPDLTTTDFFTEAELAMLQWPPVVDETRRRIALCEKLYEDVIKMQVQMGSAFNGKQVTVEDLKWAVFIVVSRVLTVVRGDDVRFAKLLIPGIDMFNHDASSPHVLTGRMAAGASLKVLAGADVKAGTQVNIAYSGGVPRSDRFIQDYGFLDAAGCSEADAILL 807
            M AKK  KK A      +GFG   AKP+        AG  + I  A +   +QWL + G  + K+AIADF GLRGV A ++I++G+ I+ +P    ++LG +G                                P      TT+F++E EL  L+W  V+ ET+ R+A+    YE       Q+G + N  + T E+  W V+ +VSRVLT+   +D    K LIP IDMFNHDA+SPH L  +       +++AG  + AG Q+N  Y GG   +DR IQDYGF++++   +   +LL
Sbjct:    5 MMAKKSPKKGAPV---AKGFG---AKPTL-------AGKASRIDSADSERFFQWLKAGGASVSKVAIADFDGLRGVAAEKNIEEGEVIVSIPRDICLNLGSDGVNPGYAAAQLVRIEKDEERRRNGWFQPFFDMLPKYEQCDTTEFYSENELNALEWDAVIQETKSRVAMLRSTYE-----ASQVGLS-NDIKFTWEEFLWGVYQIVSRVLTIYTNEDGA-VKYLIPMIDMFNHDAASPHQL--KATRDGLFQIIAGKKIFAGQQINFPYGGGNLNNDRIIQDYGFVESSNSHDVKQLLL 282          
BLAST of jgi.p|Trimin1|350092 vs. uniprot
Match: A0A448ZED2_9STRA (SET domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZED2_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.180e-37
Identity = 114/305 (37.38%), Postives = 149/305 (48.85%), Query Frame = 1
Query:  217 LRGVMALEDIKKGQCIIEVPAKSAIDLGDEGTP--------------------GSPD----------------LTTTDFFTEAELAMLQWPPVVDETR-RRIALCEKLYEDVIKMQVQMG--SAFNGKQVTVEDLKWAVFIVVSRVLTVV-RGDDVRFAKLLIPGIDMFNHDASSPHVLTGRMAAGASLKVLAGADVKAGTQVNIAYSGGVPRSDRFIQDYGFLDAAGCSEADAILLAGSLGKRYEAQ-------------------LRETTAAEDQALLEGGTLSPKEALAVQFRLALKTGTIR 954
            LRGV AL+ +KKG  I+ +P + A++LG EG                      GS D                L +TDFF++  L  LQ P V +ETR RR     +   DV  +    G  S  +G  VT + L WAV++V SRVLTV     +    +LLIP +DM NHD  SPHVL+GR   G  LKV+AGA VK G QVNI Y GG+  +DRF+QDYGFLD +    A  ++    LGKR   +                   L ET+  +D+ LLE  T  P  A A  +R+ +K    R
Sbjct:  150 LRGVAALKPVKKGDAIVNIPYELAVNLGREGADPTVPAVAFLRDYCETLGSGGGSGDRAAYYSMLPPFGGADCLGSTDFFSDLALEELQAPLVAEETRTRRKKTSSRFLSDVAPLVETGGFPSWTDGSDVTEDHLAWAVWLVTSRVLTVQGEASEGNSYRLLIPFLDMCNHDRGSPHVLSGRAVPGGELKVVAGAPVKEGDQVNICYGGGMVGNDRFLQDYGFLDTSSNGVAYDMVAQQLLGKRRIVEGIGSGRFMSESDRARTLDRLGETSLEDDERLLEE-TSDPSLAAAYSYRIGVKKALSR 453          
BLAST of jgi.p|Trimin1|350092 vs. uniprot
Match: A0A7S0EWD6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EWD6_9EUKA)

HSP 1 Score: 145 bits (367), Expect = 1.460e-37
Identity = 105/282 (37.23%), Postives = 141/282 (50.00%), Query Frame = 1
Query:  184 MRKIAIADFGGLRGVMALEDIKKGQCIIEVPAKSAIDLGDEGT-------------------------------PGSPDLTTTDFFTEAELAMLQWPPVVDETRRRIALCEKLYEDVIKMQVQMGSAFNGKQVTVEDLKWAVFIVVSRVLTVVRGD--DVRFAKLLIPGIDMFNHDASSPHVLTGRMAAGASLKVLAGADVKAGTQVNIAYSGGVPRSDRFIQDYGFLDAAGCSEADAILLAGSLGKRYEAQLRETTAAEDQALLEGGTLSPKEALAVQFRL 930
            + K+A ADF GLRGVMAL D+ KG  I+ +P  SA++LG +                                 P + DL T DFF+  E+AMLQWPPV  E   R    E +   +         A    +  +  L+WA F+V+SRVLTV   +      AKLLIP +DMFNH A   H LTGR     +L+V+AG  V+AG QV+I Y      +   +  YGF+D  G S AD  L+A        A L  T+A ED+A L   +L  ++ LA++FRL
Sbjct:   59 LHKVAPADFDGLRGVMALVDLAKGDEIVSIPGPSAVNLGSQSVDPVQAAVALLEAQARDAVANRRQAYWRLLPPPDAADLCTPDFFSAEEIAMLQWPPVAAEVEGR---AEAMRAALAATPAPAALAEVSSEEGLRQLRWATFLVLSRVLTVQSPELGPGGAAKLLIPFLDMFNHRADCKHYLTGR--TDGNLRVVAGEAVEAGQQVHIVYGTEDTSNAELLSHYGFVDR-GASAADRRLIAAQ--PEAAAALSATSAQEDEAQLGASSLPEQQQLAIRFRL 332          
BLAST of jgi.p|Trimin1|350092 vs. uniprot
Match: B8C114_THAPS (SET domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C114_THAPS)

HSP 1 Score: 141 bits (356), Expect = 2.340e-35
Identity = 99/241 (41.08%), Postives = 130/241 (53.94%), Query Frame = 1
Query:  328 LTTTDFFTEAELAMLQWPPVVDETRRRIALCEKLYEDVIKMQVQMGSAF--------NGKQV-TVEDLKWAVFIVVSRVLTVVRGDDVRFA-KLLIPGIDMFNHDASSPHVLTGRMAAGASLKVLAGADVKAGTQVNIAYSGGVPRSDRFIQDYGFLDAAGCSE--------ADAILLAGS--LGKRYEAQ----------------LRETTAAEDQALLEGGTLSPK-EALAVQFRLALK 939
            L +TDFF+E+ L M+Q P VV+ET  R  L E  YE  I+   QM S          +G  + T+  L+WA +++ SRVLTV    +   A +LLIP IDM NHD  SPH+LTGR   G +LKVLAG DVKAG  ++I Y GGV  +DRFIQDYGFLD  G  E        ADA  +     +G+R                    L+ TT  ED+ LL    +    E LA+++R+ +K
Sbjct:  152 LGSTDFFSESALEMMQSPIVVEETLLRRQLVEARYERDIETMAQMSSNLYRWGNEEGSGSSIATLSHLQWATWLITSRVLTVQGSPEETVAHRLLIPLIDMCNHDRDSPHLLTGRAMPGGTLKVLAGTDVKAGDAIDIGYGGGVEGNDRFIQDYGFLDEGGSKERNNSKFNVADAYKIVAKTLVGRRSGGSGMTKLTVADQERALEALKATTLEEDEELLSSEKVEKSDELLALEYRIGMK 392          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350092 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YYW2_9STRA3.390e-218100.00SET domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S4B569_CHRCT3.540e-5139.77Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
R1C564_EMIHU3.260e-4538.85Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A0M0JVN2_9EUKA1.020e-4436.71Histone-lysine n-methyltransferase n=1 Tax=Chrysoc... [more]
A0A7S1D8S2_CYCTE1.570e-4238.11Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A6U3YH37_9STRA6.320e-4237.63Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
L1IZH7_GUITC2.380e-3935.00SET domain-containing protein n=1 Tax=Guillardia t... [more]
A0A448ZED2_9STRA1.180e-3737.38SET domain-containing protein n=1 Tax=Pseudo-nitzs... [more]
A0A7S0EWD6_9EUKA1.460e-3737.23Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
B8C114_THAPS2.340e-3541.08SET domain-containing protein n=1 Tax=Thalassiosir... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_55contigContig_55:765261..769541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350092|estExt_Genemark1.C_Ctg_550091
DescriptionSET domain
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2E2ZA@1|root,2SA51@2759|Eukaryota
Evalue5.35e-46
Seed ortholog2903.EOD17718
Hectar predicted targeting categoryother localisation
TranscriptId350414
TrackFilteredModels1
ProteinId350092
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350092gene_7334Tribonema minus UTEX_B_3156 geneContig_55 765261..769541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350092Trimin1|350092|estExt_Genemark1.C_Ctg_550091Tribonema minus UTEX_B_3156 polypeptideContig_55 765261..769541 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7334_1exon_7334_1Tribonema minus UTEX_B_3156 exonContig_55 765261..765572 +
exon_7334_2exon_7334_2Tribonema minus UTEX_B_3156 exonContig_55 765891..765992 +
exon_7334_3exon_7334_3Tribonema minus UTEX_B_3156 exonContig_55 766803..766894 +
exon_7334_4exon_7334_4Tribonema minus UTEX_B_3156 exonContig_55 767136..767249 +
exon_7334_5exon_7334_5Tribonema minus UTEX_B_3156 exonContig_55 768279..768450 +
exon_7334_6exon_7334_6Tribonema minus UTEX_B_3156 exonContig_55 769083..769232 +
exon_7334_7exon_7334_7Tribonema minus UTEX_B_3156 exonContig_55 769524..769541 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7334CDS_7334Tribonema minus UTEX_B_3156 CDSContig_55 765261..765572 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7334 ID=mRNA_7334|Name=jgi.p|Trimin1|350092|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=960bp|location=Sequence derived from alignment at Contig_55:765261..769541+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGCCAAGAAGCCTGCAAAGAAGCAAGCTGCAACGAAGATCAGCCT
CAGAGGCTTCGGTGGCACTGCTGCTAAACCATCAAAAGAGGCTGCAGCAG
CTGGCTCTGCGGGGGACGGCACGCTGATTCGTGACGCGAGCACTCTGGCG
CTTTATCAGTGGCTGGACAGTGCTGGCGTCGACATGAGAAAGATTGCAAT
CGCTGACTTCGGTGGGCTGAGGGGAGTGATGGCTCTTGAGGATATCAAGA
AGGGGCAGTGCATTATAGAGGTGCCTGCGAAGTCTGCCATCGACCTGGGG
GACGAGGGCACGCCGGGCAGCCCTGACCTGACAACAACGGATTTCTTCAC
AGAGGCGGAACTGGCCATGCTGCAGTGGCCACCCGTTGTGGATGAAACGC
GCAGACGCATTGCGCTGTGCGAGAAGCTCTACGAAGACGTCATCAAGATG
CAAGTGCAGATGGGCAGCGCTTTCAACGGAAAGCAGGTCACTGTTGAGGA
CCTCAAGTGGGCAGTCTTCATAGTGGTGAGCAGAGTTCTAACGGTGGTCC
GTGGGGATGACGTGAGATTTGCCAAGCTGCTCATACCGGGCATCGACATG
TTCAACCACGATGCATCCAGTCCGCATGTGCTGACAGGCAGGATGGCCGC
GGGCGCATCGCTCAAAGTACTGGCAGGCGCTGACGTCAAGGCAGGCACGC
AGGTCAACATTGCCTACTCTGGAGGTGTGCCGCGCAGCGACAGGTTCATA
CAGGACTATGGTTTCTTGGATGCTGCTGGCTGCTCTGAGGCGGATGCCAT
TCTGCTGGCCGGTTCCTTGGGCAAGCGCTACGAGGCACAGCTAAGGGAAA
CCACTGCCGCGGAGGATCAGGCACTGCTGGAAGGGGGTACTCTGTCGCCA
AAGGAAGCTCTGGCGGTGCAGTTCAGGCTCGCACTCAAGACGGGCACCAT
CCGCAAGTAA
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protein sequence of jgi.p|Trimin1|350092

>Trimin1|350092|estExt_Genemark1.C_Ctg_550091 ID=Trimin1|350092|estExt_Genemark1.C_Ctg_550091|Name=jgi.p|Trimin1|350092|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=320bp
MAAKKPAKKQAATKISLRGFGGTAAKPSKEAAAAGSAGDGTLIRDASTLA
LYQWLDSAGVDMRKIAIADFGGLRGVMALEDIKKGQCIIEVPAKSAIDLG
DEGTPGSPDLTTTDFFTEAELAMLQWPPVVDETRRRIALCEKLYEDVIKM
QVQMGSAFNGKQVTVEDLKWAVFIVVSRVLTVVRGDDVRFAKLLIPGIDM
FNHDASSPHVLTGRMAAGASLKVLAGADVKAGTQVNIAYSGGVPRSDRFI
QDYGFLDAAGCSEADAILLAGSLGKRYEAQLRETTAAEDQALLEGGTLSP
KEALAVQFRLALKTGTIRK*
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mRNA from alignment at Contig_55:765261..769541+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7334 ID=mRNA_7334|Name=jgi.p|Trimin1|350092|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4281bp|location=Sequence derived from alignment at Contig_55:765261..769541+ (Tribonema minus UTEX_B_3156 )
ATGGCAGCCAAGAAGCCTGCAAAGAAGCAAGCTGCAACGAAGATCAGCCT CAGAGGCTTCGGTGGCACTGCTGCTAAACCATCAAAAGAGGCTGCAGCAG CTGGCTCTGCGGGGGACGGCACGCTGATTCGTGACGCGAGCACTCTGGCG CTTTATCAGTGGCTGGACAGTGCTGGCGTCGACATGAGAAAGATTGCAAT CGCTGACTTCGGTGGGCTGAGGGGAGTGATGGCTCTTGAGGATATCAAGA AGGGGCAGTGCATTATAGAGGTGCCTGCGAAGTCTGCCATCGACCTGGGG GACGAGGGCACGGTGAGGGACGCACTTCAAGTTGAAGTTGATGGGTGAGA GTGGGTCATGCTTGTATACTTGCTCCGACCATCAGTTCTGATTTGAAAGA TTCACTTCTGCCGCCAGCAGATAATCGCCGCCCTACTGCCGGGTATAATT GAACCCCAGCCTCTTCACCGCACCACCGACCTCTGATTTCTTGACCTCAC ACGAGTGTTGTCAACTGTCGTTGTGCTGATGGCCAACCCCTAGGATCCCA CAATGCCGGCGCTGGAGCTGCTGAAGGTCTGGTGCAACAGGGAGGGCCGC TGGAATGCATACCTTGACTCACTGCCACAGCCGGGCAGCCCTGACCTGAC AACAACGGATTTCTTCACAGAGGCGGAACTGGCCATGCTGCAGTGGCCAC CCGTTGTGGATGAAACGCGCAGACGCATTGCGGTGAGTGATTTCGGTCAT ATTGTCGTTTGCTGAGCATGAGTTGATACCAGGCAGACAGACACCTGTGA CATGCGTTTGAGATGATAGTCCTGCTACCGAGCGGCCTATCCAACTCAAC AAGGTGCTTGATTGGAAGAAATATATTCTGGCAGATGCAGCTAGATGCAA CATACTAAATGGTCAATTGTGCTGATACGTCTGTAGTTTCTTCTTGCATT CTATATGAACAATGTGACCCACATAACAGCGCTGATGCCCTGCAATTAAC TGCGCGTTCTTGCAATATATCTGCCGCACCCAGCAGTTGCACATTGGATA GATGGGCATCAACCAGGCTCTATGCTGTTGAACCACCAACTAGTAGATGA ATGAGAGGTTGCAAGTTGTTGCATTAACGTTGCACTGCTTGTAATTCCAT CAATGTCTATTGCCGCATACATACAAAGTATACAAAGTAACACTTCAGTC ACGAACATCTTTGGCACCTTCTGAAGACTGATACTTCATCTACACTGCCA AACCGTGATGATCACAGCAGCGCTCATCATACACCTGCATCATATGTGCA GCATGCTACATTAGACTGTGTTGCTAAGGCGTTGGAGCGTTGACCTGCTG TCGGTGTTCTGAGACTATGGTCAATGAAACTGTTTCTGGTCAAATCGAAC GCAACTGTGCAATCAATGTCGGCACTTGATGTTGCCATGATTCAGTTCGG AAAGTGCCAGTACATCAGCCTGGCTCGATCCCTCACCTAACCAAATTTCA CCTAGGCTTCAACTGGTTGTGACCCTCCTGCCCTTGCTGCAGCTGTGCGA GAAGCTCTACGAAGACGTCATCAAGATGCAAGTGCAGATGGGCAGCGCTT TCAACGGAAAGCAGGTCACTGTTGAGGACCTCAAGTGAGTGACACTCGTC GGCTAGGTGCTTTCTACGGTTGACTCGTTTGACGGCTGTCATGACGATTG CAGATGCCATGCGGTAGCGCCATGTATGCCTAGCCTGTGTCAAGCGTATC CATTTTGCTGGCCTGCTCAGTGCTCATACCTCAGAGTTTATGTGGCAGTC GTCTTGCTCAAGCGATTCTGTTCAGGTATATTCAAAGACTACTTCTCACT GCGTCTGCTCTGCTGCATGTGTTAGGTGGGCAGTCTTCATAGTGGTGAGC AGAGTTCTAACGGTGGTCCGTGGGGATGACGTGAGATTTGCCAAGCTGCT CATACCGGGCATCGACATGTTCAACCACGATGCATCCAGGTGAGCAATGC TCAAAGCAATGCCTACATACGGCGTTGTTTTTTAGGAGCAAAGAGCTGAT GCAGTAGTGGTGCAATTGCGGTAGATGATTCTGTGGCCAGTGCACATGAA GGTACTGGCTTTTATGTCAGGCAGAATATAGATGTGATGCACACAAGTGC AACGTACGCAAGCTGGCCTGATGGCTGAGCTCCGCAAGCAACTGCATCAA CTGCAGTAATGCGAGGGCGTCAGAGGGCTTCAATGCTGTTTGAGACACGG GTTTGGATAACAGGACGACCCCTGTGAAGCCAGCATCAGCTTGTGGCTGC ACCATGTTTGACAATGAGCGCAGCTGCACATGCACAGCATTACCTCAGCT CTGAAGATTCACAGTCACTGATGAATCAATTGTGCGCATGGATGTATGCA CAACATGATTCAGAAGAAAGAGCTCTGTCCTGTACATACATGCCTGTGCA TACATACAACTGTGTGACCAGGTCAGGGCACAAAGTGGTTGAAAACGGCA TGGCATGTGACATCATATGGCAGTGCGCATGACAGAGGATACCATCCCTG GCACCATTCATAGTTGCTCATGGACGTACAATCACGTTTTTGCACAACAT CTTTCCTCATACTTTCAAGCATATGTTAACCCAGTTCATTCGGCGGCCGT CTGTTGCTGTCTGCTGCTGCTCATGTCCATCTCTCACATTATGCGCCTGT ACTCTATGTTTTGTTGTCACATATTGTTCGTATGTTTGCAGTAGTCGCGC ACTTGCCGGACATGAGCAAAACACGCGTCTGTATGCATACTCATATGGAC ATGCAGCTTCACAACAATGCCCATGATTATCACTCACACCAGTCACCTGG ATGCCGCTGCCATTGAGAGATGGCGTGGACCTGCTCCAGCACTTGGCTGT ATGGCACCGAAAGACTGCTGCGCAAGAAGAGTCACATACGCCAACGCCCA CACATACGTCAGGTGATACCAAATCAAGTAGCGGCAACACTGACCTTCCT CCTGTGTGGCGATTGCAGTCCGCATGTGCTGACAGGCAGGATGGCCGCGG GCGCATCGCTCAAAGTACTGGCAGGCGCTGACGTCAAGGCAGGCACGCAG GTCAACATTGCCTACTCTGGAGGTGTGCCGCGCAGCGACAGGTTCATACA GGACTATGGTTTCTTGGATGCTGCTGGCTGCTCTGAGGCGGTGAGTGTGA CCATGTTATTACGATATTATCATGACATGATGCACTCGCAGTGAATGGAG CATCTGGTCGTTATATGGCTGTTAGTATGTGGGAACGCTGGCACGCATGC GCAGATAGGTGGGGCTGAGGGCGGTGTATGTGCAGCACCAGCGTTTGGAG GTACCATCAAGAGTCACACTATGGTGGCGCAGTGAGCATGACAATGGGCA TGGGTTCAAGACAACATGCGATTTCTGAACCATATTTGAAAGCAGCAGCC GGTCGTGCGCACCATGCATCAACACAGGTGCCCCATGGGAATAATTGACT GTGTGAGAGGTGCGACAATTGCACATGAGCTTTGTAACTCTCTTGTGTAC TTGGCAGTACTTTATCAGTGTGCACAAGCTCAGCAGCGCTTGACTTGCCT CTCAAGTACTCATAGCCTGCTGCGAAAACATTTCTGCGTTCTTGCCCTCC GTGTCGATCGATCAATTCCTGTTATCCTGTACGCCCCCCCCCCCCCCCCC ACCCCCACCCCCACCCGCCATCCCCATCCCCGCCTCTCCCTCCCCTTTGA CAGCATGTGCTTACCTGTGCCTGGTTTTTGGTGAGGATTGCTCACAGTTG GCCCCTTTGCCTCCTCTCGCAGGATGCCATTCTGCTGGCCGGTTCCTTGG GCAAGCGCTACGAGGCACAGCTAAGGGAAACCACTGCCGCGGAGGATCAG GCACTGCTGGAAGGGGGTACTCTGTCGCCAAAGGAAGCTCTGGCGGTGCA GTTCAGGCTCGCACTCAAGACGGTATTAGACTCAAAGGCATGATGTCCCA GCCAAGGCTGAGCATTACAGCAGCCACAAGCAGCCATAGAGAGAGAGCCT TAGAAGAGAGAGTCTTAATGTGACTTTTCCCGCCTTGTACGCAAGTGCTT GTGCCAGTGTTTAAGTGCTTGGACCACCGACCACTGATGTTGCGCTGCTT TGACATTGCTTGGCACAGCAAACGATCGCGCCTGCGTCACACAGCTGTGC AACAGCACTCTTTTGCACATTTTTTTGCTGCATTATGCAAGATTCTTCTA GCTGCTGCAGCAGGGCACCATCCGCAAGTAA
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Coding sequence (CDS) from alignment at Contig_55:765261..769541+

>mRNA_7334 ID=mRNA_7334|Name=jgi.p|Trimin1|350092|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=960bp|location=Sequence derived from alignment at Contig_55:765261..769541+ (Tribonema minus UTEX_B_3156 )
ATGGCAGCCAAGAAGCCTGCAAAGAAGCAAGCTGCAACGAAGATCAGCCT
CAGAGGCTTCGGTGGCACTGCTGCTAAACCATCAAAAGAGGCTGCAGCAG
CTGGCTCTGCGGGGGACGGCACGCTGATTCGTGACGCGAGCACTCTGGCG
CTTTATCAGTGGCTGGACAGTGCTGGCGTCGACATGAGAAAGATTGCAAT
CGCTGACTTCGGTGGGCTGAGGGGAGTGATGGCTCTTGAGGATATCAAGA
AGGGGCAGTGCATTATAGAGGTGCCTGCGAAGTCTGCCATCGACCTGGGG
GACGAGGGCACGCCGGGCAGCCCTGACCTGACAACAACGGATTTCTTCAC
AGAGGCGGAACTGGCCATGCTGCAGTGGCCACCCGTTGTGGATGAAACGC
GCAGACGCATTGCGCTGTGCGAGAAGCTCTACGAAGACGTCATCAAGATG
CAAGTGCAGATGGGCAGCGCTTTCAACGGAAAGCAGGTCACTGTTGAGGA
CCTCAAGTGGGCAGTCTTCATAGTGGTGAGCAGAGTTCTAACGGTGGTCC
GTGGGGATGACGTGAGATTTGCCAAGCTGCTCATACCGGGCATCGACATG
TTCAACCACGATGCATCCAGTCCGCATGTGCTGACAGGCAGGATGGCCGC
GGGCGCATCGCTCAAAGTACTGGCAGGCGCTGACGTCAAGGCAGGCACGC
AGGTCAACATTGCCTACTCTGGAGGTGTGCCGCGCAGCGACAGGTTCATA
CAGGACTATGGTTTCTTGGATGCTGCTGGCTGCTCTGAGGCGGATGCCAT
TCTGCTGGCCGGTTCCTTGGGCAAGCGCTACGAGGCACAGCTAAGGGAAA
CCACTGCCGCGGAGGATCAGGCACTGCTGGAAGGGGGTACTCTGTCGCCA
AAGGAAGCTCTGGCGGTGCAGTTCAGGCTCGCACTCAAGACGGGCACCAT
CCGCAAGTAA
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