Trimin1|350050|estExt_Genemark1.C_Ctg_550025 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|350050
Unique Name	Trimin1\|350050\|estExt_Genemark1.C_Ctg_550025
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	882

Homology

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BLAST of jgi.p|Trimin1|350050 vs. uniprot
Match: A0A835YP66_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP66_9STRA)

HSP 1 Score: 1186 bits (3067), Expect = 0.000e+0
Identity = 881/881 (100.00%), Postives = 881/881 (100.00%), Query Frame = 0

Query:    1 MPSEPESFEITEVDDGAAFPLEADGEDCGALQNIPTNSSRIGVSPKVSSAAAVAIKPAALNGTGSRAAATGDGHTAPVKGRSAIASAVLAAAPTNASNSQQGVAAADAVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPNAAAGERQQPGTRQRRERAGINPAFADFHVDISGAAGAEQPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPKRRKCLMPDDEVNIQYIPLKPRDPQNEAPALREDTKERRIALVKVAKSRRAFWRARHAFARRFAAHPFLLHTAPPAHCGMWPMLAGQPLDLQRLFHAALQKGGYPALEADRSVPAPPVTSTXXXXXXXXXXXXXXWTGGPVASEAAQGMEPWGARWEAVYETMTKPLRSKAVTVAALDAVAFRRAKLRRVYESTLLAFEERCPQDILVAALAAGERALDPAEAVGFVRCVCGHSHQSPLPTVDAECKGCEGSGGGAAASPAGVLRRTRTDMIQCDVCAAWQHSYHMSDVGLLRVQDISDKVSLEQESHFCELCSGIYDDGFEAFYKKHAPFERRPAVSMLPKMLKFELPDAWALESLYRKDEGIKTKLDMAIYRGFLNICISRKKMIRSITALAHFVTGDGTPRPIVADRDDIPVTADVTAGIDPDTNLPHMVIPRGPVPVLRGAADAVDAGGDTAAGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXXXXMVDDDADQAIDEVDEEETEAQDVKDTIPGGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARPAAFPITPAGRRC 881
            MPSEPESFEITEVDDGAAFPLEADGEDCGALQNIPTNSSRIGVSPKVSSAAAVAIKPAALNGTGSRAAATGDGHTAPVKGRSAIASAVLAAAPTNASNSQQGVAAADAVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPNAAAGERQQPGTRQRRERAGINPAFADFHVDISGAAGAEQPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPKRRKCLMPDDEVNIQYIPLKPRDPQNEAPALREDTKERRIALVKVAKSRRAFWRARHAFARRFAAHPFLLHTAPPAHCGMWPMLAGQPLDLQRLFHAALQKGGYPALEADRSVPAPPVTSTXXXXXXXXXXXXXXWTGGPVASEAAQGMEPWGARWEAVYETMTKPLRSKAVTVAALDAVAFRRAKLRRVYESTLLAFEERCPQDILVAALAAGERALDPAEAVGFVRCVCGHSHQSPLPTVDAECKGCEGSGGGAAASPAGVLRRTRTDMIQCDVCAAWQHSYHMSDVGLLRVQDISDKVSLEQESHFCELCSGIYDDGFEAFYKKHAPFERRPAVSMLPKMLKFELPDAWALESLYRKDEGIKTKLDMAIYRGFLNICISRKKMIRSITALAHFVTGDGTPRPIVADRDDIPVTADVTAGIDPDTNLPHMVIPRGPVPVLRGAADAVDAGGDTAAGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXXXXMVDDDADQAIDEVDEEETEAQDVKDTIPGGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARPAAFPITPAGRRC
Sbjct:    1 MPSEPESFEITEVDDGAAFPLEADGEDCGALQNIPTNSSRIGVSPKVSSAAAVAIKPAALNGTGSRAAATGDGHTAPVKGRSAIASAVLAAAPTNASNSQQGVAAADAVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPNAAAGERQQPGTRQRRERAGINPAFADFHVDISGAAGAEQPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPKRRKCLMPDDEVNIQYIPLKPRDPQNEAPALREDTKERRIALVKVAKSRRAFWRARHAFARRFAAHPFLLHTAPPAHCGMWPMLAGQPLDLQRLFHAALQKGGYPALEADRSVPAPPVTSTXXXXXXXXXXXXXXWTGGPVASEAAQGMEPWGARWEAVYETMTKPLRSKAVTVAALDAVAFRRAKLRRVYESTLLAFEERCPQDILVAALAAGERALDPAEAVGFVRCVCGHSHQSPLPTVDAECKGCEGSGGGAAASPAGVLRRTRTDMIQCDVCAAWQHSYHMSDVGLLRVQDISDKVSLEQESHFCELCSGIYDDGFEAFYKKHAPFERRPAVSMLPKMLKFELPDAWALESLYRKDEGIKTKLDMAIYRGFLNICISRKKMIRSITALAHFVTGDGTPRPIVADRDDIPVTADVTAGIDPDTNLPHMVIPRGPVPVLRGAADAVDAGGDTAAGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXXXXMVDDDADQAIDEVDEEETEAQDVKDTIPGGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARPAAFPITPAGRRC 881

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350050 vs. uniprot

BLAST of jgi.p|Trimin1|350050 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YP66_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 768..788
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 767..783
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 712..810
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 345..381
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 352..367
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..242
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 859..881
IPR036431	ARID DNA-binding domain superfamily	GENE3D	1.10.150.60		coord: 276..442 e-value: 1.1E-6 score: 30.2
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 452..553 e-value: 1.3E-6 score: 29.7
IPR011011	Zinc finger, FYVE/PHD-type	SUPERFAMILY	57903	FYVE/PHD zinc finger	coord: 505..555

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_55	contig	Contig_55:164368..170008 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350050	mRNA_7257	Tribonema minus UTEX_B_3156	mRNA	Contig_55 164368..170008 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|350050|estExt_Genemark1.C_Ctg_550025 ID=Trimin1|350050|estExt_Genemark1.C_Ctg_550025|Name=jgi.p|Trimin1|350050|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=882bp
MPSEPESFEITEVDDGAAFPLEADGEDCGALQNIPTNSSRIGVSPKVSSA
AAVAIKPAALNGTGSRAAATGDGHTAPVKGRSAIASAVLAAAPTNASNSQ
QGVAAADAVGAQQAPPQSLPPRPQQPPPQQQQQQLRQPQLPPLSLVLPAA
ANKRRRSSPPPPPLPNAAAGERQQPGTRQRRERAGINPAFADFHVDISGA
AGAEQPPSPPCPPAGRAYSGGGGGGGGGGGKGGKGQPKRRKCLMPDDEVN
IQYIPLKPRDPQNEAPALREDTKERRIALVKVAKSRRAFWRARHAFARRF
AAHPFLLHTAPPAHCGMWPMLAGQPLDLQRLFHAALQKGGYPALEADRSV
PAPPVTSTSSSSSPRGGEGGGGWTGGPVASEAAQGMEPWGARWEAVYETM
TKPLRSKAVTVAALDAVAFRRAKLRRVYESTLLAFEERCPQDILVAALAA
GERALDPAEAVGFVRCVCGHSHQSPLPTVDAECKGCEGSGGGAAASPAGV
LRRTRTDMIQCDVCAAWQHSYHMSDVGLLRVQDISDKVSLEQESHFCELC
SGIYDDGFEAFYKKHAPFERRPAVSMLPKMLKFELPDAWALESLYRKDEG
IKTKLDMAIYRGFLNICISRKKMIRSITALAHFVTGDGTPRPIVADRDDI
PVTADVTAGIDPDTNLPHMVIPRGPVPVLRGAADAVDAGGDTAAGRRARA
AALAAAGSSRNLDVAAAPPPKKQRAAPVQKRRGSGGGRSSVGSGGGGSSG
GSGGGGSDGGGAMVDDDADQAIDEVDEEETEAQDVKDTIPGGRGGGSGGG
RGSGSGGSGAGSSSGRTAAAAAAAVAAAAAAAAAAAAAALRLQMRLQLRL
RLRLLPPQRQQQRQHQARPAAFPITPAGRRC*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036431	ARID_dom_sf
IPR013083	Znf_RING/FYVE/PHD
IPR011011	Znf_FYVE_PHD