mRNA_7340 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|150456
Unique NamemRNA_7340
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|150456 vs. uniprot
Match: A0A836CB13_9STRA (HotDog domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB13_9STRA)

HSP 1 Score: 307 bits (787), Expect = 3.980e-106
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1
Query:    1 LHDVTDLLRRYPEYWRDHVLHDTLNYRHGVQCPVVSHDSAGCRLQAVVRFGQQTRGHPDLVHGGITALTFDNLQGWCMFMDGRTNVLTAYLHVDFKAPLPTHTTVLAEVRIDRQEGRKLFASGTIRTLDGSITFATCSSLFIIPRD 438
            LHDVTDLLRRYPEYWRDHVLHDTLNYRHGVQCPVVSHDSAGCRLQAVVRFGQQTRGHPDLVHGGITALTFDNLQGWCMFMDGRTNVLTAYLHVDFKAPLPTHTTVLAEVRIDRQEGRKLFASGTIRTLDGSITFATCSSLFIIPRD
Sbjct:    1 LHDVTDLLRRYPEYWRDHVLHDTLNYRHGVQCPVVSHDSAGCRLQAVVRFGQQTRGHPDLVHGGITALTFDNLQGWCMFMDGRTNVLTAYLHVDFKAPLPTHTTVLAEVRIDRQEGRKLFASGTIRTLDGSITFATCSSLFIIPRD 146          
BLAST of jgi.p|Trimin1|150456 vs. uniprot
Match: A0A835YMX9_9STRA (HotDog domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMX9_9STRA)

HSP 1 Score: 204 bits (519), Expect = 8.210e-64
Identity = 97/144 (67.36%), Postives = 115/144 (79.86%), Query Frame = 1
Query:    7 DVTDLLRRYPEYWRDHVLHDTLNYRHGVQCPVVSHDSAGCRLQAVVRFGQQTRGHPDLVHGGITALTFDNLQGWCMFMDGRTNVLTAYLHVDFKAPLPTHTTVLAEVRIDRQEGRKLFASGTIRTLDGSITFATCSSLFIIPRD 438
            DV  LL   P Y RDHV HDTLN+  GVQCP V++D     L+AVVRFG+QTRGHP+LVHGGIT+LTFDNL GW  F++GR  VLTAYLHVDFKAPLPT T  + EV++DRQEGRKLF  G I +LDG+IT+ATC+SLF+IP+D
Sbjct:   97 DVDRLLATNPAYKRDHVFHDTLNHYQGVQCPYVTYDRDSNSLKAVVRFGEQTRGHPNLVHGGITSLTFDNLLGWLQFLEGRMAVLTAYLHVDFKAPLPTTTQTMVEVKMDRQEGRKLFMVGAIMSLDGNITYATCTSLFVIPKD 240          
BLAST of jgi.p|Trimin1|150456 vs. uniprot
Match: D7FR34_ECTSI (4HBT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR34_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 2.240e-42
Identity = 70/148 (47.30%), Postives = 102/148 (68.92%), Query Frame = 1
Query:    1 LHDVTDLLRRYPEYWRDHVLHDTLNYRHGVQCPVVSH--DSAGCRLQAVVRFGQQTRGHPDLVHGGITALTFDNLQGWCMFMDGRTNVLTAYLHVDFKAPLPTHTTVLAEVRIDRQEGRKLFASGTIRTLDGSITFATCSSLFIIPRD 438
            +HDV  +L + P    D+  HDTLN   G+ CP V +  D  G  ++AVVRFG+   GHP +VHGG+TALTFDNL G  +F+     V TAY+ VDFKAPLP  TT + ++ +DR+EGRKL+ +G +++LDG++TF++  +LF+ P++
Sbjct:   92 VHDVDKILVKTPLLRNDNAFHDTLNNDSGISCPFVLNRPDQDGEGIEAVVRFGKSIAGHPKIVHGGVTALTFDNLFGMALFLQNTGAVFTAYIKVDFKAPLPCLTTAVVDITVDRKEGRKLYVTGRLKSLDGTVTFSSAEALFVKPKE 239          
BLAST of jgi.p|Trimin1|150456 vs. uniprot
Match: A0A7D9LEU6_PARCT (4HBT domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LEU6_PARCT)

HSP 1 Score: 93.2 bits (230), Expect = 1.260e-20
Identity = 47/101 (46.53%), Postives = 66/101 (65.35%), Query Frame = 1
Query:  130 LQAVVRFGQQTRGHPDLVHGGITALTFDNLQGWCMFMDGRTNVLTAYLHVDFKAPLPTHTTVLAEVRIDRQEGRKLFASGTIRTLDGSITFATCSSLFIIP 432
            ++AVV+FG  TRG   LVHGG  A   D   G C    G  ++ TA L+V +K P+P +TT L E +ID+ EGRK+F SG I+T+DG   ++T +S+FI+P
Sbjct:  120 IKAVVQFGLYTRGPVGLVHGGAIATILDVAMGNCAIYSGYRSI-TANLNVYYKRPIPLNTTTLVEAKIDKIEGRKVFVSGAIKTVDGCAIYSTATSIFIMP 219          
BLAST of jgi.p|Trimin1|150456 vs. uniprot
Match: H9H162_MELGA (4HBT domain-containing protein n=5 Tax=Phasianidae TaxID=9005 RepID=H9H162_MELGA)

HSP 1 Score: 78.6 bits (192), Expect = 2.250e-15
Identity = 38/108 (35.19%), Postives = 57/108 (52.78%), Query Frame = 1
Query:  115 SAGCRLQAVVRFGQQTRGHPDLVHGGITALTFDNLQGWCMFMDGRTNVLTAYLHVDFKAPLPTHTTVLAEVRIDRQEGRKLFASGTIRTLDGSITFATCSSLFIIPRD 438
            ++G R Q + + G    GH    HGG  A   D   G C     +T+V+TA L + + AP+P    V+A+ R++R EGRK+F S  +R   G   +A  ++LFI   D
Sbjct:   68 ASGHRTQCLCQLGPYLEGHHGFTHGGAIATLIDTTVGTCALAVAKTSVMTAKLSISYLAPMPVGAVVMADSRLERHEGRKIFLSCCVRDTKGDTLYAEATALFIQVED 175          
BLAST of jgi.p|Trimin1|150456 vs. uniprot
Match: A0A669QDX4_PHACC (Thioesterase superfamily member 4 n=2 Tax=Phasianinae TaxID=9072 RepID=A0A669QDX4_PHACC)

HSP 1 Score: 79.7 bits (195), Expect = 3.350e-15
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 1
Query:  115 SAGCRLQAVVRFGQQTRGHPDLVHGGITALTFDNLQGWCMFMDGRTNVLTAYLHVDFKAPLPTHTTVLAEVRIDRQEGRKLFASGTIRTLDGSITFATCSSLFIIPRD 438
            S+G R Q + + G    GH    HGG  A   D   G C     +T+V+TA L++ + AP+P    V+A+ R++R EGRK+F S  +R   G   +A  ++LFI   D
Sbjct:  149 SSGHRTQCLCQLGPYLEGHHGFAHGGAIATLIDTTVGTCALAVAKTSVMTAKLNISYLAPMPVGAVVVADSRMERHEGRKIFLSCRVRDTKGDTLYAEATALFIQVED 256          
BLAST of jgi.p|Trimin1|150456 vs. uniprot
Match: UPI00074FDC0B (acyl-coenzyme A thioesterase THEM4-like n=1 Tax=Gekko japonicus TaxID=146911 RepID=UPI00074FDC0B)

HSP 1 Score: 79.0 bits (193), Expect = 5.990e-15
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:  127 RLQAVVRFGQQTRGHPDLVHGGITALTFDNLQGWCMFMDGRTNVLTAYLHVDFKAPLPTHTTVLAEVRIDRQEGRKLFASGTIRTLDGSITFATCSSLFI 426
            R+  V + G    G P  VHGG  A   D++ G C  M    +V+TA L++++K P+P  + VLAE ++D+ EGRK+F SG +R++DG    A  + LFI
Sbjct:  146 RMACVAQLGPYLEGPPGFVHGGSIATILDSVLGGCA-MSLLGHVMTANLNINYKTPVPLGSVVLAESKLDKLEGRKVFVSGHVRSVDGETLHAEATGLFI 244          
BLAST of jgi.p|Trimin1|150456 vs. uniprot
Match: A0A6S7JQV7_PARCT (Acyl-coenzyme A thioesterase THEM4 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JQV7_PARCT)

HSP 1 Score: 75.5 bits (184), Expect = 2.790e-14
Identity = 39/102 (38.24%), Postives = 62/102 (60.78%), Query Frame = 1
Query:  130 LQAVVRFGQQTRGHPDLVHGGITALTFDNLQGWCMFMDGRTNVLTAYLHVDFKAPLPTHTTVLAEVRIDRQEGRKLFASGTIRTLDGSITFATCSSLFIIPR 435
            ++AVV+FG  TRG    VHGG  A   D     C    G  +V T  L++++K  +P +TT L E +ID+ EGRK+F S  ++++D    ++T +S+F+IP+
Sbjct:   72 VKAVVQFGLYTRGPVGHVHGGAIATILDIAMAQCA---GNGSV-TVNLNIEYKRAVPLNTTTLVEAKIDKIEGRKMFLSAAVKSVDSCQIYSTATSIFVIPK 169          
BLAST of jgi.p|Trimin1|150456 vs. uniprot
Match: A0A670K8K3_PODMU (Thioesterase superfamily member 4 n=3 Tax=Lacertinae TaxID=162266 RepID=A0A670K8K3_PODMU)

HSP 1 Score: 76.6 bits (187), Expect = 3.880e-14
Identity = 39/101 (38.61%), Postives = 63/101 (62.38%), Query Frame = 1
Query:  127 RLQAVVRFGQQTRGHPDLVHGGITALTFDNLQGWC-MFMDGRTNVLTAYLHVDFKAPLPTHTTVLAEVRIDRQEGRKLFASGTIRTLDGSITFATCSSLFI 426
            R+ ++ + G    G P  VHGG  A   D++ G C +F+ GR  VLTA L +++K+P+P  + VL E ++DR EGRK+F +G ++++DG       ++LFI
Sbjct:  137 RMVSMFQLGPYLEGPPGFVHGGCIATILDSVLGTCAIFVAGR--VLTANLTINYKSPIPLGSVVLVESKLDRIEGRKVFVTGHVQSVDGQTVHTEATALFI 235          
BLAST of jgi.p|Trimin1|150456 vs. uniprot
Match: UPI00101A156E (acyl-coenzyme A thioesterase THEM4 n=1 Tax=Eptesicus fuscus TaxID=29078 RepID=UPI00101A156E)

HSP 1 Score: 75.1 bits (183), Expect = 3.990e-13
Identity = 40/110 (36.36%), Postives = 64/110 (58.18%), Query Frame = 1
Query:  100 VVSHDSAGCRLQAVVRFGQQTRGHPDLVHGGITALTFDNLQGWCMFMDGRTNVLTAYLHVDFKAPLPTHTTVLAEVRIDRQEGRKLFASGTIRTLDGSITFATCSSLFII 429
            V+ ++ A  R+  V + G   +G P   HGG TA   D+  G    + G   V+TA L+++FK P+P  +TVL   ++D+ EGRKLF S  ++++D  I +   +SLFI+
Sbjct:  245 VMFYNEAEKRIVCVFQGGPHLQGMPGFFHGGATATMIDSTVGMNAIVSGGI-VMTANLNINFKRPIPLCSTVLINSQLDKMEGRKLFVSCNVQSVDEKILYTEATSLFIV 353          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150456 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CB13_9STRA3.980e-106100.00HotDog domain-containing protein (Fragment) n=1 Ta... [more]
A0A835YMX9_9STRA8.210e-6467.36HotDog domain-containing protein n=1 Tax=Tribonema... [more]
D7FR34_ECTSI2.240e-4247.304HBT domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7D9LEU6_PARCT1.260e-2046.534HBT domain-containing protein n=1 Tax=Paramuricea... [more]
H9H162_MELGA2.250e-1535.194HBT domain-containing protein n=5 Tax=Phasianidae... [more]
A0A669QDX4_PHACC3.350e-1536.11Thioesterase superfamily member 4 n=2 Tax=Phasiani... [more]
UPI00074FDC0B5.990e-1540.00acyl-coenzyme A thioesterase THEM4-like n=1 Tax=Ge... [more]
A0A6S7JQV7_PARCT2.790e-1438.24Acyl-coenzyme A thioesterase THEM4 n=1 Tax=Paramur... [more]
A0A670K8K3_PODMU3.880e-1438.61Thioesterase superfamily member 4 n=3 Tax=Lacertin... [more]
UPI00101A156E3.990e-1336.36acyl-coenzyme A thioesterase THEM4 n=1 Tax=Eptesic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_55contigContig_55:794856..795293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|150456|gw1.55.146.1
BRITEko00000,ko00001
KEGG Pathwayko04151,map04151
KEGG koko:K16339
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006163,GO:0006629,GO:0006631,GO:0006637,GO:0006644,GO:0006650,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006915,GO:0006996,GO:0007005,GO:0007006,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009117,GO:0009150,GO:0009259,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0012501,GO:0016020,GO:0016043,GO:0016289,GO:0016290,GO:0016787,GO:0016788,GO:0016790,GO:0019637,GO:0019693,GO:0019752,GO:0023051,GO:0023052,GO:0023057,GO:0031974,GO:0032048,GO:0032787,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035336,GO:0035337,GO:0035383,GO:0035556,GO:0035965,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043491,GO:0043603,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046471,GO:0046483,GO:0046486,GO:0046902,GO:0047617,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051186,GO:0051234,GO:0051716,GO:0051896,GO:0051898,GO:0055086,GO:0061024,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0072521,GO:0090559,GO:1901135,GO:1901360,GO:1901564,GO:1901568,GO:1902108,GO:1902531,GO:1902532
Preferred nameTHEM4
Descriptionthioesterase
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4781@1|root,KOG4781@2759|Eukaryota
Evalue3.67e-43
Seed ortholog2880.D7FR34
Hectar predicted targeting categoryother localisation
TranscriptId150778
TrackFilteredModels1
ProteinId150456
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150456gene_7340Tribonema minus UTEX_B_3156 geneContig_55 794856..795293 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7340_1exon_7340_1Tribonema minus UTEX_B_3156 exonContig_55 794856..795293 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7340CDS_7340Tribonema minus UTEX_B_3156 CDSContig_55 794856..795293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150456Trimin1|150456|gw1.55.146.1Tribonema minus UTEX_B_3156 polypeptideContig_55 794856..795293 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7340 ID=mRNA_7340|Name=jgi.p|Trimin1|150456|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=438bp|location=Sequence derived from alignment at Contig_55:794856..795293+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGCATGATGTCACTGACCTCTTACGCAGATACCCGGAGTATTGGCGGGA
TCACGTGCTGCATGACACGCTGAACTATCGCCATGGAGTGCAGTGCCCGG
TCGTCAGTCATGACAGCGCAGGTTGCAGGCTGCAGGCGGTGGTGAGGTTT
GGGCAGCAGACACGGGGGCACCCAGATCTTGTGCACGGCGGCATCACGGC
ACTCACATTTGATAATCTTCAGGGGTGGTGCATGTTTATGGACGGTCGTA
CAAATGTGCTCACGGCGTATCTACATGTGGACTTTAAGGCGCCGCTGCCT
ACGCATACTACGGTATTGGCGGAGGTCAGGATCGATCGGCAGGAGGGCCG
CAAGCTGTTTGCATCGGGCACCATACGCACTCTGGATGGCAGCATCACCT
TTGCAACATGCTCCAGCCTCTTCATTATCCCGAGGGAT
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protein sequence of jgi.p|Trimin1|150456

>Trimin1|150456|gw1.55.146.1 ID=Trimin1|150456|gw1.55.146.1|Name=jgi.p|Trimin1|150456|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=146bp
LHDVTDLLRRYPEYWRDHVLHDTLNYRHGVQCPVVSHDSAGCRLQAVVRF
GQQTRGHPDLVHGGITALTFDNLQGWCMFMDGRTNVLTAYLHVDFKAPLP
THTTVLAEVRIDRQEGRKLFASGTIRTLDGSITFATCSSLFIIPRD
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mRNA from alignment at Contig_55:794856..795293+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7340 ID=mRNA_7340|Name=jgi.p|Trimin1|150456|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=438bp|location=Sequence derived from alignment at Contig_55:794856..795293+ (Tribonema minus UTEX_B_3156 )
CTGCATGATGTCACTGACCTCTTACGCAGATACCCGGAGTATTGGCGGGA TCACGTGCTGCATGACACGCTGAACTATCGCCATGGAGTGCAGTGCCCGG TCGTCAGTCATGACAGCGCAGGTTGCAGGCTGCAGGCGGTGGTGAGGTTT GGGCAGCAGACACGGGGGCACCCAGATCTTGTGCACGGCGGCATCACGGC ACTCACATTTGATAATCTTCAGGGGTGGTGCATGTTTATGGACGGTCGTA CAAATGTGCTCACGGCGTATCTACATGTGGACTTTAAGGCGCCGCTGCCT ACGCATACTACGGTATTGGCGGAGGTCAGGATCGATCGGCAGGAGGGCCG CAAGCTGTTTGCATCGGGCACCATACGCACTCTGGATGGCAGCATCACCT TTGCAACATGCTCCAGCCTCTTCATTATCCCGAGGGAT
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Coding sequence (CDS) from alignment at Contig_55:794856..795293+

>mRNA_7340 ID=mRNA_7340|Name=jgi.p|Trimin1|150456|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=438bp|location=Sequence derived from alignment at Contig_55:794856..795293+ (Tribonema minus UTEX_B_3156 )
CTGCATGATGTCACTGACCTCTTACGCAGATACCCGGAGTATTGGCGGGA
TCACGTGCTGCATGACACGCTGAACTATCGCCATGGAGTGCAGTGCCCGG
TCGTCAGTCATGACAGCGCAGGTTGCAGGCTGCAGGCGGTGGTGAGGTTT
GGGCAGCAGACACGGGGGCACCCAGATCTTGTGCACGGCGGCATCACGGC
ACTCACATTTGATAATCTTCAGGGGTGGTGCATGTTTATGGACGGTCGTA
CAAATGTGCTCACGGCGTATCTACATGTGGACTTTAAGGCGCCGCTGCCT
ACGCATACTACGGTATTGGCGGAGGTCAGGATCGATCGGCAGGAGGGCCG
CAAGCTGTTTGCATCGGGCACCATACGCACTCTGGATGGCAGCATCACCT
TTGCAACATGCTCCAGCCTCTTCATTATCCCGAGGGAT
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