mRNA_7093 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|167919
Unique NamemRNA_7093
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|167919 vs. uniprot
Match: A0A836CB53_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB53_9STRA)

HSP 1 Score: 238 bits (608), Expect = 2.490e-73
Identity = 329/329 (100.00%), Postives = 329/329 (100.00%), Query Frame = 1 
Query:    1 MGDPDLCDTAAKHGQLGALELLRSRQPPAPWGSSTVKSACDHGHHGIAEWLIDNDCPVDDTVAVSAAAQGNVPLLRRLRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYLKRTGVPWGETVRLAALYGQLPLLRAAHELEAPFEGSTCSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVATTDDMLEWVREQRLLELEAI 987
            MGDPDLCDTAAKHGQLGALELLRSRQPPAPWGSSTVKSACDHGHHGIAEWLIDNDCPVDDTVAVSAAAQGNVPLLRRLRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYLKRTGVPWGETVRLAALYGQLPLLRAAHELEAPFEGSTCSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVATTDDMLEWVREQRLLELEAI
Sbjct:    1 MGDPDLCDTAAKHGQLGALELLRSRQPPAPWGSSTVKSACDHGHHGIAEWLIDNDCPVDDTVAVSAAAQGNVPLLRRLRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYLKRTGVPWGETVRLAALYGQLPLLRAAHELEAPFEGSTCSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVATTDDMLEWVREQRLLELEAI 329
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BLAST of jgi.p|Trimin1|167919 vs. uniprot
Match: A0A835YXV6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXV6_9STRA)

HSP 1 Score: 165 bits (417), Expect = 9.470e-43
Identity = 159/199 (79.90%), Postives = 166/199 (83.42%), Query Frame = 1 
Query:    1 MGDPDLCDTAAKHGQLGALELLRSRQPPAPWGSSTVKSACDHGHHGIAEWLIDNDCPVDDTVAVSAAAQGNVPLLRRLRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYLKRTGVPWGETVRLAALYGQLPLLRAAHELEAPFEGSTCSA 597
            +G  DLCDTAAKHGQLGALELLRSRQPPAPWG+STVK ACD+GH  IA WLI+++CPVDDTVAVSAAAQG+VPLL RLRE  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXXX            WGETVRLAA YGQLPLLR AHELEAPFEGS C A
Sbjct:  239 LGTNDLCDTAAKHGQLGALELLRSRQPPAPWGTSTVKLACDNGHLAIAAWLINHNCPVDDTVAVSAAAQGSVPLLTRLRELRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAVDESACXXXXXXXXXXXXXXXXXXXXL-----------WGETVRLAAHYGQLPLLRTAHELEAPFEGSACKA 426
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BLAST of jgi.p|Trimin1|167919 vs. uniprot
Match: A0A836CAH4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAH4_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 8.810e-19
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:   19 CDTAAKHGQLGALELLRSRQPPAPWGSSTVKSACDHGHHGIAEWLIDNDCPV-----DDTVAVSAAAQGNVPLLRRL 234
            C+TAAKHGQLGAL+LLRSRQPPAPWG+ TVK AC+ GH   A WL +++CP+      DT A +AA  G++  L+ L
Sbjct:    1 CNTAAKHGQLGALQLLRSRQPPAPWGTGTVKLACEKGHRDTAMWLFNHNCPLRCPMWTDTCA-AAARHGHLAALQYL 76
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BLAST of jgi.p|Trimin1|167919 vs. uniprot
Match: A0A836CB25_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB25_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.750e-18
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:   88 PWGSSTVKSACDHGHHGIAEWLIDNDCPVDDTVAVSAAAQGNVPLLRRLRE 240
            PWG+STVK ACD GHH  A WLI+N+CP DDTVAVSAAAQG+VPLL R+RE
Sbjct:    1 PWGTSTVKLACDKGHHDTAMWLINNNCPADDTVAVSAAAQGSVPLLTRIRE 51
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167919 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CB53_9STRA2.490e-73100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YXV6_9STRA9.470e-4379.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CAH4_9STRA8.810e-1957.14Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CB25_9STRA4.750e-1876.47Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_54contigContig_54:632137..633126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|167919|e_gw1.54.193.1
Hectar predicted targeting categoryother localisation
TranscriptId168241
TrackFilteredModels1
ProteinId167919
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167919gene_7093Tribonema minus UTEX_B_3156 geneContig_54 632137..633126 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7093_1exon_7093_1Tribonema minus UTEX_B_3156 exonContig_54 632137..633126 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7093CDS_7093Tribonema minus UTEX_B_3156 CDSContig_54 632137..633126 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167919Trimin1|167919|e_gw1.54.193.1Tribonema minus UTEX_B_3156 polypeptideContig_54 632137..633126 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7093 ID=mRNA_7093|Name=jgi.p|Trimin1|167919|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=990bp|location=Sequence derived from alignment at Contig_54:632137..633126- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGATCCTGATCTGTGCGACACCGCCGCCAAGCACGGGCAGCTGGG
CGCGCTGGAGCTGCTGCGCAGCAGGCAGCCTCCGGCACCGTGGGGTAGCA
GCACCGTCAAGTCTGCATGCGACCACGGGCACCACGGCATCGCGGAGTGG
CTCATCGACAACGACTGCCCTGTGGACGACACCGTCGCCGTGTCTGCCGC
GGCACAAGGCAATGTCCCCTTGCTGAGGCGCCTGCGCGAGCGGGGGTGCC
ACATGTGGCCGGACACTTGCGCTGCGGCGGCGCGCCACGGTCACCTCGCC
GCCCTGCAGTACCTTCGCACCCAGCACATCCCCATGGACGAGCTGACGCC
TGCCGCCGCGGCGCGCGGCGGCCACGTCGACGTCCTGCAGTGGACTTTCG
AAATCGAGTGTGCCGTCGACGAGTCCGCCTGCGAGGAGGCGGCGCGCGGC
GGTCAGGTCTCCGCTCTGCGGTACCTGAAGCGCACGGGGGTGCCGTGGGG
TGAGACCGTCAGGCTTGCGGCGCTCTACGGACAGCTGCCGCTGCTGCGCG
CTGCGCACGAGCTCGAGGCGCCGTTCGAGGGCAGCACGTGCAGCGCGGCA
GCACAGGAGCAGCGTCTGGAGGTGCTGCGGTGGCTGCGCGCCATTGGCTG
CCCCTTCGACGGCAGCGAGTGCGAGACGGCGGCACGCGAGGGGCGTATGA
AGGTGCTGCAGTGCCTGCACGAGCTCGAGGCGCTGTTCGACCCCAGCGTG
TGCAAGGCGGCCGCTCAGGCGGGGCGTCTGGCGGTGCTGCAGTGGCTGCG
CGGTATCGGCTGCCCCTTCGACAAGAGCGCGTGCGAGGCGGCGGCGCGCG
AGGGGCACCTCGAGGTGCTGCAGTGGCTGCGCGCTGTCAGGTGCCCCTGG
GACGTGGACGCCTGCGAGCGCGTTGCCACGACCGACGACATGCTGGAGTG
GGTAAGGGAGCAGCGCCTGCTTGAGCTTGAGGCCATCTGA
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protein sequence of jgi.p|Trimin1|167919

>Trimin1|167919|e_gw1.54.193.1 ID=Trimin1|167919|e_gw1.54.193.1|Name=jgi.p|Trimin1|167919|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=330bp
MGDPDLCDTAAKHGQLGALELLRSRQPPAPWGSSTVKSACDHGHHGIAEW
LIDNDCPVDDTVAVSAAAQGNVPLLRRLRERGCHMWPDTCAAAARHGHLA
ALQYLRTQHIPMDELTPAAAARGGHVDVLQWTFEIECAVDESACEEAARG
GQVSALRYLKRTGVPWGETVRLAALYGQLPLLRAAHELEAPFEGSTCSAA
AQEQRLEVLRWLRAIGCPFDGSECETAAREGRMKVLQCLHELEALFDPSV
CKAAAQAGRLAVLQWLRGIGCPFDKSACEAAAREGHLEVLQWLRAVRCPW
DVDACERVATTDDMLEWVREQRLLELEAI*
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mRNA from alignment at Contig_54:632137..633126-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7093 ID=mRNA_7093|Name=jgi.p|Trimin1|167919|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=990bp|location=Sequence derived from alignment at Contig_54:632137..633126- (Tribonema minus UTEX_B_3156 )
ATGGGCGATCCTGATCTGTGCGACACCGCCGCCAAGCACGGGCAGCTGGG
CGCGCTGGAGCTGCTGCGCAGCAGGCAGCCTCCGGCACCGTGGGGTAGCA
GCACCGTCAAGTCTGCATGCGACCACGGGCACCACGGCATCGCGGAGTGG
CTCATCGACAACGACTGCCCTGTGGACGACACCGTCGCCGTGTCTGCCGC
GGCACAAGGCAATGTCCCCTTGCTGAGGCGCCTGCGCGAGCGGGGGTGCC
ACATGTGGCCGGACACTTGCGCTGCGGCGGCGCGCCACGGTCACCTCGCC
GCCCTGCAGTACCTTCGCACCCAGCACATCCCCATGGACGAGCTGACGCC
TGCCGCCGCGGCGCGCGGCGGCCACGTCGACGTCCTGCAGTGGACTTTCG
AAATCGAGTGTGCCGTCGACGAGTCCGCCTGCGAGGAGGCGGCGCGCGGC
GGTCAGGTCTCCGCTCTGCGGTACCTGAAGCGCACGGGGGTGCCGTGGGG
TGAGACCGTCAGGCTTGCGGCGCTCTACGGACAGCTGCCGCTGCTGCGCG
CTGCGCACGAGCTCGAGGCGCCGTTCGAGGGCAGCACGTGCAGCGCGGCA
GCACAGGAGCAGCGTCTGGAGGTGCTGCGGTGGCTGCGCGCCATTGGCTG
CCCCTTCGACGGCAGCGAGTGCGAGACGGCGGCACGCGAGGGGCGTATGA
AGGTGCTGCAGTGCCTGCACGAGCTCGAGGCGCTGTTCGACCCCAGCGTG
TGCAAGGCGGCCGCTCAGGCGGGGCGTCTGGCGGTGCTGCAGTGGCTGCG
CGGTATCGGCTGCCCCTTCGACAAGAGCGCGTGCGAGGCGGCGGCGCGCG
AGGGGCACCTCGAGGTGCTGCAGTGGCTGCGCGCTGTCAGGTGCCCCTGG
GACGTGGACGCCTGCGAGCGCGTTGCCACGACCGACGACATGCTGGAGTG
GGTAAGGGAGCAGCGCCTGCTTGAGCTTGAGGCCATCTGA
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Coding sequence (CDS) from alignment at Contig_54:632137..633126-

>mRNA_7093 ID=mRNA_7093|Name=jgi.p|Trimin1|167919|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=990bp|location=Sequence derived from alignment at Contig_54:632137..633126- (Tribonema minus UTEX_B_3156 )
ATGGGCGATCCTGATCTGTGCGACACCGCCGCCAAGCACGGGCAGCTGGG
CGCGCTGGAGCTGCTGCGCAGCAGGCAGCCTCCGGCACCGTGGGGTAGCA
GCACCGTCAAGTCTGCATGCGACCACGGGCACCACGGCATCGCGGAGTGG
CTCATCGACAACGACTGCCCTGTGGACGACACCGTCGCCGTGTCTGCCGC
GGCACAAGGCAATGTCCCCTTGCTGAGGCGCCTGCGCGAGCGGGGGTGCC
ACATGTGGCCGGACACTTGCGCTGCGGCGGCGCGCCACGGTCACCTCGCC
GCCCTGCAGTACCTTCGCACCCAGCACATCCCCATGGACGAGCTGACGCC
TGCCGCCGCGGCGCGCGGCGGCCACGTCGACGTCCTGCAGTGGACTTTCG
AAATCGAGTGTGCCGTCGACGAGTCCGCCTGCGAGGAGGCGGCGCGCGGC
GGTCAGGTCTCCGCTCTGCGGTACCTGAAGCGCACGGGGGTGCCGTGGGG
TGAGACCGTCAGGCTTGCGGCGCTCTACGGACAGCTGCCGCTGCTGCGCG
CTGCGCACGAGCTCGAGGCGCCGTTCGAGGGCAGCACGTGCAGCGCGGCA
GCACAGGAGCAGCGTCTGGAGGTGCTGCGGTGGCTGCGCGCCATTGGCTG
CCCCTTCGACGGCAGCGAGTGCGAGACGGCGGCACGCGAGGGGCGTATGA
AGGTGCTGCAGTGCCTGCACGAGCTCGAGGCGCTGTTCGACCCCAGCGTG
TGCAAGGCGGCCGCTCAGGCGGGGCGTCTGGCGGTGCTGCAGTGGCTGCG
CGGTATCGGCTGCCCCTTCGACAAGAGCGCGTGCGAGGCGGCGGCGCGCG
AGGGGCACCTCGAGGTGCTGCAGTGGCTGCGCGCTGTCAGGTGCCCCTGG
GACGTGGACGCCTGCGAGCGCGTTGCCACGACCGACGACATGCTGGAGTG
GGTAAGGGAGCAGCGCCTGCTTGAGCTTGAGGCCATCTGA
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