mRNA_7010 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|149478
Unique NamemRNA_7010
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|149478 vs. uniprot
Match: A0A836CAH4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAH4_9STRA)

HSP 1 Score: 199 bits (506), Expect = 1.230e-63
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1 
Query:    1 CNTAAKHGQLGALQLLRSRQPPAPWGTGTVKLACEKGHRDTAMWLFNHNCPLRCPMWTDTCAAAARHGHLAALQYLHTERIAMDELTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALRYLKSMEV 405
            CNTAAKHGQLGALQLLRSRQPPAPWGTGTVKLACEKGHRDTAMWLFNHNCPLRCPMWTDTCAAAARHGHLAALQYLHTERIAMDELTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALRYLKSMEV
Sbjct:    1 CNTAAKHGQLGALQLLRSRQPPAPWGTGTVKLACEKGHRDTAMWLFNHNCPLRCPMWTDTCAAAARHGHLAALQYLHTERIAMDELTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALRYLKSMEV 135
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BLAST of jgi.p|Trimin1|149478 vs. uniprot
Match: A0A835YXV6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXV6_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 5.920e-21
Identity = 50/81 (61.73%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:    1 CNTAAKHGQLGALQLLRSRQPPAPWGTGTVKLACEKGHRDTAMWLFNHNCPLRCPMWTDTCA-AAARHGHLAALQYLHTER 240
            C+TAAKHGQLGAL+LLRSRQPPAPWGT TVKLAC+ GH   A WL NHNCP+      DT A +AA  G +  L  L   R
Sbjct:  245 CDTAAKHGQLGALELLRSRQPPAPWGTSTVKLACDNGHLAIAAWLINHNCPV-----DDTVAVSAAAQGSVPLLTRLRELR 320
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BLAST of jgi.p|Trimin1|149478 vs. uniprot
Match: A0A836CCB7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCB7_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.810e-19
Identity = 53/112 (47.32%), Postives = 56/112 (50.00%), Query Frame = 1 
Query:    1 CNTAAKHGQLGALQLLRSRQPPAPWGTGTVKLACEKGHRDTAMWLFNHNCP-----------------------LRCPMW-TDTCAAAARHGHLAALQYLHTERIAMDELTP 264
            CN AAKHGQ  ALQ+LRS QPPA WG  TVK  C  GH     WL    CP                       L C M    TCAAAARHGHL ALQYL +  + MD  TP
Sbjct:   99 CNAAAKHGQFEALQVLRSLQPPALWGADTVKRVCAHGHSTIVDWLLTKGCPVDDCVAEAAAAKGDVSLLARLHGLPCDMGGAGTCAAAARHGHLEALQYLVSLDVPMDAQTP 210
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BLAST of jgi.p|Trimin1|149478 vs. uniprot
Match: A0A836CB53_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB53_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.580e-18
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:    1 CNTAAKHGQLGALQLLRSRQPPAPWGTGTVKLACEKGHRDTAMWLFNHNCPLRCPMWTDTCA-AAARHGHLAALQYL 228
            C+TAAKHGQLGAL+LLRSRQPPAPWG+ TVK AC+ GH   A WL +++CP+      DT A +AA  G++  L+ L
Sbjct:    7 CDTAAKHGQLGALELLRSRQPPAPWGSSTVKSACDHGHHGIAEWLIDNDCPV-----DDTVAVSAAAQGNVPLLRRL 78
[Close]
BLAST of jgi.p|Trimin1|149478 vs. uniprot
Match: A0A836CB25_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB25_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 9.550e-11
Identity = 30/59 (50.85%), Postives = 32/59 (54.24%), Query Frame = 1 
Query:   70 PWGTGTVKLACEKGHRDTAMWLFNHNCP-----------------------LRCPMWTD 177
            PWGT TVKLAC+KGH DTAMWL N+NCP                       L CPMWTD
Sbjct:    1 PWGTSTVKLACDKGHHDTAMWLINNNCPADDTVAVSAAAQGSVPLLTRIRELGCPMWTD 59
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149478 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A836CAH4_9STRA1.230e-63100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YXV6_9STRA5.920e-2161.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CCB7_9STRA1.810e-1947.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CB53_9STRA2.580e-1857.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CB25_9STRA9.550e-1150.85Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_54contigContig_54:105026..105515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|149478|gw1.54.166.1
Hectar predicted targeting categoryother localisation
TranscriptId149800
TrackFilteredModels1
ProteinId149478
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149478gene_7010Tribonema minus UTEX_B_3156 geneContig_54 105026..105515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149478Trimin1|149478|gw1.54.166.1Tribonema minus UTEX_B_3156 polypeptideContig_54 105026..105515 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7010_2exon_7010_2Tribonema minus UTEX_B_3156 exonContig_54 105026..105277 -
exon_7010_1exon_7010_1Tribonema minus UTEX_B_3156 exonContig_54 105363..105515 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7010CDS_7010Tribonema minus UTEX_B_3156 CDSContig_54 105363..105515 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7010 ID=mRNA_7010|Name=jgi.p|Trimin1|149478|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=405bp|location=Sequence derived from alignment at Contig_54:105026..105515- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCAACACCGCTGCCAAGCACGGGCAGCTGGGCGCGCTGCAGCTGCTGCG
CAGCAGGCAGCCTCCGGCACCGTGGGGTACCGGCACCGTGAAGCTGGCGT
GCGAGAAGGGGCACCGCGACACCGCGATGTGGCTCTTCAACCACAACTGC
CCTCTGCGCTGCCCCATGTGGACGGACACGTGCGCTGCGGCGGCTCGCCA
CGGCCACCTCGCCGCGCTGCAGTACCTCCACACCGAGCGCATCGCCATGG
ACGAGCTGACGCCTGCTGCCGCGGCGCGCGGCGGCCACGCCGACGTCCTG
CAGTGGACCTTTGATGTTCAGTGCGCCGTTGACGAGTCGGCCTGCGAGGA
GGCGGCGCGCGGCGGTCAGGTCTCCGCTCTGCGGTACCTGAAGAGCATGG
AGGTG
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protein sequence of jgi.p|Trimin1|149478

>Trimin1|149478|gw1.54.166.1 ID=Trimin1|149478|gw1.54.166.1|Name=jgi.p|Trimin1|149478|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=135bp
CNTAAKHGQLGALQLLRSRQPPAPWGTGTVKLACEKGHRDTAMWLFNHNC
PLRCPMWTDTCAAAARHGHLAALQYLHTERIAMDELTPAAAARGGHADVL
QWTFDVQCAVDESACEEAARGGQVSALRYLKSMEV
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mRNA from alignment at Contig_54:105026..105515-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7010 ID=mRNA_7010|Name=jgi.p|Trimin1|149478|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=490bp|location=Sequence derived from alignment at Contig_54:105026..105515- (Tribonema minus UTEX_B_3156 )
TGCAACACCGCTGCCAAGCACGGGCAGCTGGGCGCGCTGCAGCTGCTGCG
CAGCAGGCAGCCTCCGGCACCGTGGGGTACCGGCACCGTGAAGCTGGCGT
GCGAGAAGGGGCACCGCGACACCGCGATGTGGCTCTTCAACCACAACTGC
CCTGTGGACGGCACCGTCGCCGCGTCTGCCGCGGCGCAGGGGCCGCAGCG
CAGGGTAACATCCCCCTGCTAACGCGCCTCCGCGCGAGCTGCGCTGCCCC
ATGTGGACGGACACGTGCGCTGCGGCGGCTCGCCACGGCCACCTCGCCGC
GCTGCAGTACCTCCACACCGAGCGCATCGCCATGGACGAGCTGACGCCTG
CTGCCGCGGCGCGCGGCGGCCACGCCGACGTCCTGCAGTGGACCTTTGAT
GTTCAGTGCGCCGTTGACGAGTCGGCCTGCGAGGAGGCGGCGCGCGGCGG
TCAGGTCTCCGCTCTGCGGTACCTGAAGAGCATGGAGGTG
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Coding sequence (CDS) from alignment at Contig_54:105026..105515-

>mRNA_7010 ID=mRNA_7010|Name=jgi.p|Trimin1|149478|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=405bp|location=Sequence derived from alignment at Contig_54:105026..105515- (Tribonema minus UTEX_B_3156 )
TGCAACACCGCTGCCAAGCACGGGCAGCTGGGCGCGCTGCAGCTGCTGCG
CAGCAGGCAGCCTCCGGCACCGTGGGGTACCGGCACCGTGAAGCTGGCGT
GCGAGAAGGGGCACCGCGACACCGCGATGTGGCTCTTCAACCACAACTGC
CCTCTGCGCTGCCCCATGTGGACGGACACGTGCGCTGCGGCGGCTCGCCA
CGGCCACCTCGCCGCGCTGCAGTACCTCCACACCGAGCGCATCGCCATGG
ACGAGCTGACGCCTGCTGCCGCGGCGCGCGGCGGCCACGCCGACGTCCTG
CAGTGGACCTTTGATGTTCAGTGCGCCGTTGACGAGTCGGCCTGCGAGGA
GGCGGCGCGCGGCGGTCAGGTCTCCGCTCTGCGGTACCTGAAGAGCATGG
AGGTG
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