mRNA_9919 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349938
Unique NamemRNA_9919
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|349938 vs. uniprot
Match: A0A836CAP6_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAP6_9STRA)

HSP 1 Score: 506 bits (1302), Expect = 5.430e-182
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 1
Query:    1 MGAGLCPLLVCCPKNCPLCANRANCLKNADDPSCCPKKDITTSLQRVDTGLSDIEVSCRYKAPPCTMPPADDPCVGQHGDRVVCLRNARCGVRYVSDDPGYVQGTSTSADNGCIGTEFYCKCPEGVTGRRCERKCKKGQTACGYGFDPVCVRVGEHYGYTTKCVPKGHPEKCSPSAWAHPQLPDPCQNGGKCVNLNYWQQPYNAAYVCRCAKGFHGPLCQYKDK 672
            MGAGLCPLLVCCPKNCPLCANRANCLKNADDPSCCPKKDITTSLQRVDTGLSDIEVSCRYKAPPCTMPPADDPCVGQHGDRVVCLRNARCGVRYVSDDPGYVQGTSTSADNGCIGTEFYCKCPEGVTGRRCERKCKKGQTACGYGFDPVCVRVGEHYGYTTKCVPKGHPEKCSPSAWAHPQLPDPCQNGGKCVNLNYWQQPYNAAYVCRCAKGFHGPLCQYKDK
Sbjct:    1 MGAGLCPLLVCCPKNCPLCANRANCLKNADDPSCCPKKDITTSLQRVDTGLSDIEVSCRYKAPPCTMPPADDPCVGQHGDRVVCLRNARCGVRYVSDDPGYVQGTSTSADNGCIGTEFYCKCPEGVTGRRCERKCKKGQTACGYGFDPVCVRVGEHYGYTTKCVPKGHPEKCSPSAWAHPQLPDPCQNGGKCVNLNYWQQPYNAAYVCRCAKGFHGPLCQYKDK 224          
BLAST of jgi.p|Trimin1|349938 vs. uniprot
Match: A0A836CBA5_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBA5_9STRA)

HSP 1 Score: 409 bits (1050), Expect = 6.990e-143
Identity = 183/241 (75.93%), Postives = 200/241 (82.99%), Query Frame = 1
Query:    1 MGAGLCPLLVCCPKNCPLCANRANCLKNADDPSCCPKKDITTSLQRVDTGLSDIEVSCRYKAPPCTMPPADDPCVGQHGDRVVCLRNARCGVRYVSDDPGYVQGTSTSADNGCIGTEFYCKCPEGVTGRRCERKCKKGQTACGYGFDPV-----------------CVRVGEHYGYTTKCVPKGHPEKCSPSAWAHPQLPDPCQNGGKCVNLNYWQQPYNAAYVCRCAKGFHGPLCQYKDK 672
            MGAGLCPLLVCCPKNCPLCA+RANCLK+ADDPSCCPK DI TSLQ +DTGLSDIEVSCRYKAPPCTMPPADDPCV +HG   VC ++ARCGVRYVSD P YVQGTSTS D+GCIG E YC CPEG TG RCERKCKKGQT CGYG+ PV                 CV+VGEH+GY T+C+PKG P+KC+PS + HPQ+PDPC+NGGKCVNLNYWQQP  AAYVCRCAKGFHGPLCQYKDK
Sbjct:   30 MGAGLCPLLVCCPKNCPLCADRANCLKHADDPSCCPKPDIATSLQHIDTGLSDIEVSCRYKAPPCTMPPADDPCVDRHG--AVCRQDARCGVRYVSDAPSYVQGTSTSTDSGCIGAEAYCACPEGFTGPRCERKCKKGQTPCGYGYSPVRSKSFGPNDICCARDRVCVKVGEHWGYNTRCLPKGRPQKCTPSKFTHPQVPDPCRNGGKCVNLNYWQQPQYAAYVCRCAKGFHGPLCQYKDK 268          
BLAST of jgi.p|Trimin1|349938 vs. uniprot
Match: A0A836CBW0_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBW0_9STRA)

HSP 1 Score: 417 bits (1071), Expect = 1.020e-142
Identity = 194/261 (74.33%), Postives = 206/261 (78.93%), Query Frame = 1
Query:    1 MGAGLCPLLVCCPKNCPLCANRANCLKNADDPSCCPKKDITTSLQRVDTGLSDIEVSCRYKAPPCTMPPADDPCVGQHGDRVVCLRNARCGVRYVSDDPGYVQ------------GTSTSADNGCIGTEFYCKCPEGVTGRRCERKCKKGQTACGYGFDP-------------------------VCVRVGEHYGYTTKCVPKGHPEKCSPSAWAHPQLPDPCQNGGKCVNLNYWQQPYNAAYVCRCAKGFHGPLCQYKDK 672
            MGAGLCPLLVCCPKNCPLCANRANCLKNA +PSCCP+KDI  +LQR+DTGLSDIEVSCRYKAPPCTMPPADDPCVGQHGDRVVCLRNARCGVRYVSDDPGYVQ            GT+TS DNGCIGTEFYC+C + VTG RCERKCKKGQTACGY FDP                         VC RVGE YG+TTKC+PKGHP+KCSPS WAHPQLPDPCQNGGKCVN+N  Q    AAY+C CAKGFHGPLCQYKDK
Sbjct:  234 MGAGLCPLLVCCPKNCPLCANRANCLKNAKNPSCCPEKDIAATLQRIDTGLSDIEVSCRYKAPPCTMPPADDPCVGQHGDRVVCLRNARCGVRYVSDDPGYVQEDLAYYALGGVQGTTTSTDNGCIGTEFYCECAKDVTGSRCERKCKKGQTACGYEFDPYRSKDFRPNDIARNAPMSGYRHTVLVCERVGEKYGFTTKCLPKGHPKKCSPSPWAHPQLPDPCQNGGKCVNINSNQVAQYAAYLCDCAKGFHGPLCQYKDK 494          
BLAST of jgi.p|Trimin1|349938 vs. uniprot
Match: A0A836CCT3_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCT3_9STRA)

HSP 1 Score: 343 bits (879), Expect = 3.310e-116
Identity = 163/258 (63.18%), Postives = 183/258 (70.93%), Query Frame = 1
Query:    1 MGAGLCPLLVCCPKNCPLCANRANCLKNADDPSCCPKKDITTSLQRVDTGLSDIEVSCRYKAPPCTMPPADDPCVGQHGDRVVCLRNARCGVRYVSDDPGYVQGTSTSADNGCIGTEFYCKCPEGVTGRRCERKCKKGQTACGY--------GFDP---------VCVRVGEHYGYTTKCVPKGHPEKCSPSAWAHPQLP-----------------DPCQNGGKCVNLNYWQQPYNAAYVCRCAKGFHGPLCQYKDK 672
            MGAGLCP+LVCCPKNCPLCA+RANCLK+ADDPSCCPK+DI T+L  +DTGLSDIEVSCRYKAPPCTMPPADDPCVG      +C ++ARCGVRY+SDDP YVQGT+TS DNGCIGTE YC CP G TGRRCERKCKKGQTACGY        GF P         VC+RV E +G+ T C+P+GHP                               +PCQNGG+CVNLN +QQ    AYVCRCAKGFHG LCQ+KDK
Sbjct:   56 MGAGLCPMLVCCPKNCPLCADRANCLKHADDPSCCPKQDIATTLLHIDTGLSDIEVSCRYKAPPCTMPPADDPCVGTQAS--MCRQDARCGVRYISDDPSYVQGTTTSTDNGCIGTESYCACPAGFTGRRCERKCKKGQTACGYEVISYHSKGFTPNDICCARNQVCMRVAERFGFKTLCLPEGHPNDSGTXXXXXXXXXXXXXXXXXXXXXKKCTLNPCQNGGRCVNLNEYQQDQYGAYVCRCAKGFHGALCQFKDK 311          
BLAST of jgi.p|Trimin1|349938 vs. uniprot
Match: A0A8C6U631_9GOBI (Uncharacterized protein n=2 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6U631_9GOBI)

HSP 1 Score: 60.8 bits (146), Expect = 3.530e-7
Identity = 36/104 (34.62%), Postives = 48/104 (46.15%), Query Frame = 1
Query:  349 EFYCKCPEGVTGRRCERKCKKGQTACGYGFDPVCVRVGEHYGYTTKCVPKGHPEKCSPSAWAHPQLPDPCQNGGKCVNLNYWQQPYNAAYVCRCAKGFHGPLCQ 660
            +F C CP+   G++C ++CK+GQ  CG G    CV   +   Y  KC     P  C       P   +PCQNGG CV            + C C+ GF G LC+
Sbjct:   97 KFKCDCPKPFKGKKCPKRCKRGQ--CGRG---ECVVTSKPPYYECKCKAPFLPPNCVDYEVCEP---NPCQNGGTCVRDGN-------DFDCTCSPGFTGRLCK 185          
BLAST of jgi.p|Trimin1|349938 vs. uniprot
Match: A0A6I9NF02_9TELE (hyaluronan-binding protein 2 n=7 Tax=Notothenioidei TaxID=8205 RepID=A0A6I9NF02_9TELE)

HSP 1 Score: 60.1 bits (144), Expect = 6.800e-7
Identity = 35/105 (33.33%), Postives = 48/105 (45.71%), Query Frame = 1
Query:  352 FYCKCPEGVTGRRCER---KCKKGQTACGYGFDPVCVRVGEHYGYTTKCVPKGHPEKCSPSAWAHPQLPDPCQNGGKCVNLNYWQQPYNAAYVCRCAKGFHGPLC 657
            F C CP+   G++C+R    C++G+  CG G    CV +     Y  KC     P  C   +   P   +PC+NGGKCVN           + C+C  GF G  C
Sbjct:  112 FECDCPKPFKGKKCQRGPKACRRGR--CGRG---ECVLISNRPYYECKCKAPFQPPHCRSYSLCEP---NPCRNGGKCVNEGN-------DFDCQCQAGFRGRFC 201          
BLAST of jgi.p|Trimin1|349938 vs. uniprot
Match: UPI000719DB15 (adhesive plaque matrix protein 2-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719DB15)

HSP 1 Score: 56.2 bits (134), Expect = 1.060e-5
Identity = 34/127 (26.77%), Postives = 59/127 (46.46%), Query Frame = 1
Query:  349 EFYCKCPEGVTGRRCERK------------CKKGQ---TACGYGFDPVCVRVGEHYGYTTKCVPKGHPEKCSPSAWAHPQL--PDPCQNGGKCV--NLNYWQQPYNAA-YVCRCAKGFHGPLCQYKD 669
            +FYC+CP G +G RCER             C+ G    T+  +G+D     V     +  KC       +C     ++P    P+PC+NGG C+  + N W + + +  + C+C + + G  C++ +
Sbjct:  230 DFYCRCPTGYSGTRCERDESSNSDYCYSNPCRNGGVCLTSSSHGWDRSWGSVN----FYCKCPRDYSGTRCERYESSNPDYCHPNPCRNGGVCLTSSSNGWDRSWGSVNFYCKCPRDYSGRHCEHYE 352          
BLAST of jgi.p|Trimin1|349938 vs. uniprot
Match: A0A835YZW3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZW3_9STRA)

HSP 1 Score: 503 bits (1294), Expect = 2.840e-171
Identity = 422/429 (98.37%), Postives = 422/429 (98.37%), Query Frame = 2
Query:    2 MARRLAALLLVGQCLHQSIAVVSNLAQIPSAGPALWSANTNINASVRDALRAAKTELDKHTQGARGRTLLGLDDCSDGSAVLPSADVNDRLLAAARSAAAAYSERALTAPSAVGRAAFADGFGKLQEAVEARVRVASANHAACLLQLNARVAELVADVAAXXXXXATCCSGGSGDAXXXXXXXXXXXXXALVECARAAALEAVLEEVPSEALRHELPAVAALDSLDAFVDATALHELCGDGDEAAQQSPRKAAGAAGVVAADAAHLLPQLAAAVPRAAAAAKDAAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLAEQIRLVTKAASAAGRAXXXXXXXDPSGAVASIVARMAPPAPQALEAAAA 1288
            MARRLAALLLVGQCLHQSIAVVSNLAQIPSAGPALWSANTNINASVRDALRAAKTELDKHTQGARGRTLLGLDDCSDGSAVLPSADVNDRLLAAARSAAAAYSERALTAPSAVGRAAFADGFGKLQEAVEARVRVASANHAACLLQLNARVAELVADVAAXXXXXATCCSGGSGDAXXXXXXXXXXXXXALVECARAAALEAVLEEVPSEALRHELPAVAALDSLDAFVDATALHELCGDGDEAAQQSPRKAAGAAGVVAADAAHLLPQLAAAVPRAAAAAKDAAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLAEQIRLVTKAASAAGRA       DPSGAVASIVARMAPPAPQALEAAAA
Sbjct:    1 MARRLAALLLVGQCLHQSIAVVSNLAQIPSAGPALWSANTNINASVRDALRAAKTELDKHTQGARGRTLLGLDDCSDGSAVLPSADVNDRLLAAARSAAAAYSERALTAPSAVGRAAFADGFGKLQEAVEARVRVASANHAACLLQLNARVAELVADVAAXXXXXATCCSGGSGDAXXXXXXXXXXXXXALVECARAAALEAVLEEVPSEALRHELPAVAALDSLDAFVDATALHELCGDGDEAAQQSPRKAAGAAGVVAADAAHLLPQLAAAVPRAAAAAKDAAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLAEQIRLVTKAASAAGRASAAAAWADPSGAVASIVARMAPPAPQALEAAAA 429          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349938 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A836CAP6_9STRA5.430e-182100.00EGF-like domain-containing protein n=1 Tax=Tribone... [more]
A0A836CBA5_9STRA6.990e-14375.93EGF-like domain-containing protein n=1 Tax=Tribone... [more]
A0A836CBW0_9STRA1.020e-14274.33EGF-like domain-containing protein n=1 Tax=Tribone... [more]
A0A836CCT3_9STRA3.310e-11663.18EGF-like domain-containing protein n=1 Tax=Tribone... [more]
A0A8C6U631_9GOBI3.530e-734.62Uncharacterized protein n=2 Tax=Neogobius melanost... [more]
A0A6I9NF02_9TELE6.800e-733.33hyaluronan-binding protein 2 n=7 Tax=Notothenioide... [more]
UPI000719DB151.060e-526.77adhesive plaque matrix protein 2-like n=1 Tax=Pria... [more]
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BLAST of jgi.p|Trimin1|349938 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YZW3_9STRA2.840e-17198.37Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_52contigContig_52:132874..137546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349938|estExt_Genemark1.C_Ctg_520019
BRITEko00000,ko00001,ko00002
KEGG ModuleM00682
KEGG Pathwayko01522,ko04320,ko04330,ko04658,ko04919,ko05020,ko05165,ko05200,ko05206,ko05224,map01522,map04320,map04330,map04658,map04919,map05020,map05165,map05200,map05206,map05224
KEGG koko:K02599,ko:K20994
GOsGO:0000003,GO:0000122,GO:0000139,GO:0000278,GO:0000578,GO:0000902,GO:0000904,GO:0001525,GO:0001568,GO:0001654,GO:0001655,GO:0001667,GO:0001700,GO:0001701,GO:0001708,GO:0001709,GO:0001736,GO:0001738,GO:0001745,GO:0001751,GO:0001752,GO:0001754,GO:0001773,GO:0001775,GO:0001816,GO:0001822,GO:0001889,GO:0001890,GO:0001894,GO:0001932,GO:0001933,GO:0001934,GO:0001944,GO:0001947,GO:0002009,GO:0002011,GO:0002052,GO:0002064,GO:0002065,GO:0002066,GO:0002164,GO:0002165,GO:0002213,GO:0002252,GO:0002263,GO:0002274,GO:0002285,GO:0002312,GO:0002313,GO:0002315,GO:0002335,GO:0002366,GO:0002376,GO:0002437,GO:0002520,GO:0002521,GO:0002573,GO:0002682,GO:0002683,GO:0002684,GO:0002761,GO:0002763,GO:0002790,GO:0003002,GO:0003006,GO:0003007,GO:0003008,GO:0003143,GO:0003170,GO:0003177,GO:0003179,GO:0003184,GO:0003205,GO:0003206,GO:0003209,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0003682,GO:0004888,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005770,GO:0005783,GO:0005789,GO:0005794,GO:0005829,GO:0005886,GO:0005887,GO:0005911,GO:0005912,GO:0005929,GO:0006109,GO:0006110,GO:0006139,GO:0006140,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0006810,GO:0006915,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006954,GO:0006955,GO:0006959,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0007050,GO:0007154,GO:0007155,GO:0007157,GO:0007162,GO:0007163,GO:0007164,GO:0007165,GO:0007166,GO:0007219,GO:0007267,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0007297,GO:0007298,GO:0007304,GO:0007306,GO:0007308,GO:0007309,GO:0007314,GO:0007346,GO:0007350,GO:0007351,GO:0007368,GO:0007386,GO:0007389,GO:0007391,GO:0007398,GO:0007399,GO:0007400,GO:0007403,GO:0007405,GO:0007409,GO:0007411,GO:0007417,GO:0007419,GO:0007422,GO:0007423,GO:0007424,GO:0007440,GO:0007442,GO:0007443,GO:0007444,GO:0007446,GO:0007447,GO:0007449,GO:0007450,GO:0007451,GO:0007455,GO:0007460,GO:0007464,GO:0007472,GO:0007473,GO:0007474,GO:0007476,GO:0007478,GO:0007480,GO:0007483,GO:0007484,GO:0007485,GO:0007498,GO:0007507,GO:0007517,GO:0007519,GO:0007521,GO:0007548,GO:0007552,GO:0007560,GO:0007568,GO:0007610,GO:0007611,GO:0007613,GO:0007616,GO:0008045,GO:0008052,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0008219,GO:0008283,GO:0008284,GO:0008340,GO:0008347,GO:0008356,GO:0008358,GO:0008407,GO:0008587,GO:0008593,GO:0008595,GO:0009058,GO:0009059,GO:0009306,GO:0009605,GO:0009607,GO:0009608,GO:0009611,GO:0009617,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009798,GO:0009799,GO:0009855,GO:0009880,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009948,GO:0009950,GO:0009952,GO:0009953,GO:0009954,GO:0009966,GO:0009967,GO:0009968,GO:0009986,GO:0009987,GO:0009994,GO:0009996,GO:0010001,GO:0010160,GO:0010259,GO:0010453,GO:0010454,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010563,GO:0010564,GO:0010604,GO:0010605,GO:0010623,GO:0010628,GO:0010629,GO:0010631,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0010721,GO:0010927,GO:0010941,GO:0010942,GO:0012501,GO:0012505,GO:0014016,GO:0014017,GO:0014019,GO:0014706,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016070,GO:0016330,GO:0016331,GO:0016333,GO:0016348,GO:0016360,GO:0016477,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019827,GO:0019899,GO:0019953,GO:0021700,GO:0021781,GO:0022008,GO:0022402,GO:0022407,GO:0022408,GO:0022412,GO:0022414,GO:0022416,GO:0022603,GO:0022607,GO:0022610,GO:0022612,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030029,GO:0030030,GO:0030036,GO:0030054,GO:0030097,GO:0030098,GO:0030099,GO:0030139,GO:0030154,GO:0030155,GO:0030182,GO:0030183,GO:0030326,GO:0030510,GO:0030513,GO:0030539,GO:0030703,GO:0030707,GO:0030708,GO:0030713,GO:0030718,GO:0030720,GO:0030808,GO:0030811,GO:0030855,GO:0031090,GO:0031099,GO:0031175,GO:0031224,GO:0031226,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031344,GO:0031399,GO:0031400,GO:0031401,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032633,GO:0032774,GO:0032835,GO:0032872,GO:0032873,GO:0032940,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0034641,GO:0034645,GO:0034654,GO:0035003,GO:0035050,GO:0035107,GO:0035108,GO:0035112,GO:0035113,GO:0035114,GO:0035120,GO:0035126,GO:0035153,GO:0035155,GO:0035157,GO:0035161,GO:0035162,GO:0035163,GO:0035165,GO:0035166,GO:0035167,GO:0035168,GO:0035170,GO:0035171,GO:0035172,GO:0035203,GO:0035204,GO:0035214,GO:0035215,GO:0035218,GO:0035220,GO:0035222,GO:0035239,GO:0035264,GO:0035265,GO:0035282,GO:0035285,GO:0035295,GO:0035622,GO:0035850,GO:0036011,GO:0036099,GO:0036335,GO:0038023,GO:0040007,GO:0040008,GO:0040009,GO:0040011,GO:0042051,GO:0042060,GO:0042063,GO:0042067,GO:0042113,GO:0042127,GO:0042175,GO:0042221,GO:0042246,GO:0042325,GO:0042326,GO:0042327,GO:0042330,GO:0042386,GO:0042387,GO:0042461,GO:0042462,GO:0042478,GO:0042480,GO:0042592,GO:0042659,GO:0042675,GO:0042676,GO:0042686,GO:0042688,GO:0042689,GO:0042691,GO:0042692,GO:0042693,GO:0042706,GO:0042742,GO:0042886,GO:0042981,GO:0042995,GO:0043009,GO:0043010,GO:0043011,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043235,GO:0043296,GO:0043408,GO:0043409,GO:0043410,GO:0043467,GO:0043470,GO:0043523,GO:0043525,GO:0043696,GO:0043697,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045165,GO:0045168,GO:0045184,GO:0045314,GO:0045316,GO:0045321,GO:0045463,GO:0045465,GO:0045466,GO:0045468,GO:0045595,GO:0045596,GO:0045597,GO:0045610,GO:0045611,GO:0045612,GO:0045613,GO:0045614,GO:0045637,GO:0045639,GO:0045664,GO:0045665,GO:0045670,GO:0045672,GO:0045747,GO:0045786,GO:0045787,GO:0045892,GO:0045893,GO:0045926,GO:0045931,GO:0045934,GO:0045935,GO:0045936,GO:0045937,GO:0045944,GO:0045967,GO:0046328,GO:0046329,GO:0046331,GO:0046483,GO:0046530,GO:0046532,GO:0046533,GO:0046552,GO:0046578,GO:0046579,GO:0046649,GO:0046661,GO:0046666,GO:0046667,GO:0046843,GO:0046849,GO:0046903,GO:0048052,GO:0048056,GO:0048138,GO:0048139,GO:0048190,GO:0048468,GO:0048469,GO:0048477,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048542,GO:0048546,GO:0048562,GO:0048563,GO:0048565,GO:0048568,GO:0048569,GO:0048580,GO:0048581,GO:0048583,GO:0048584,GO:0048585,GO:0048589,GO:0048592,GO:0048593,GO:0048598,GO:0048599,GO:0048608,GO:0048609,GO:0048619,GO:0048645,GO:0048646,GO:0048663,GO:0048666,GO:0048667,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048732,GO:0048736,GO:0048737,GO:0048749,GO:0048771,GO:0048803,GO:0048805,GO:0048806,GO:0048808,GO:0048812,GO:0048856,GO:0048858,GO:0048859,GO:0048863,GO:0048864,GO:0048865,GO:0048867,GO:0048869,GO:0048870,GO:0048871,GO:0048872,GO:0050663,GO:0050673,GO:0050767,GO:0050768,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051056,GO:0051057,GO:0051059,GO:0051093,GO:0051094,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051193,GO:0051196,GO:0051234,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051301,GO:0051489,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0051890,GO:0051960,GO:0051961,GO:0051962,GO:0055123,GO:0060089,GO:0060173,GO:0060249,GO:0060250,GO:0060255,GO:0060284,GO:0060288,GO:0060289,GO:0060411,GO:0060413,GO:0060429,GO:0060491,GO:0060537,GO:0060538,GO:0060541,GO:0060548,GO:0060562,GO:0060571,GO:0060581,GO:0060582,GO:0060674,GO:0060972,GO:0061005,GO:0061008,GO:0061009,GO:0061061,GO:0061073,GO:0061311,GO:0061314,GO:0061318,GO:0061326,GO:0061331,GO:0061333,GO:0061351,GO:0061371,GO:0061382,GO:0061437,GO:0061438,GO:0061439,GO:0061440,GO:0061458,GO:0061525,GO:0061564,GO:0062012,GO:0065007,GO:0065008,GO:0070013,GO:0070161,GO:0070302,GO:0070303,GO:0070372,GO:0070374,GO:0070986,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072001,GO:0072002,GO:0072006,GO:0072009,GO:0072010,GO:0072012,GO:0072014,GO:0072015,GO:0072073,GO:0072080,GO:0072089,GO:0072091,GO:0072102,GO:0072103,GO:0072104,GO:0072112,GO:0072310,GO:0072311,GO:0072358,GO:0072359,GO:0072574,GO:0072575,GO:0072576,GO:0072602,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0090092,GO:0090100,GO:0090130,GO:0090132,GO:0090287,GO:0090304,GO:0090596,GO:0090598,GO:0097028,GO:0097150,GO:0097435,GO:0097485,GO:0097659,GO:0097708,GO:0098542,GO:0098588,GO:0098609,GO:0098727,GO:0098742,GO:0098791,GO:0098796,GO:0098797,GO:0098827,GO:0120025,GO:0120032,GO:0120035,GO:0120036,GO:0120039,GO:1900087,GO:1900371,GO:1900542,GO:1901214,GO:1901216,GO:1901360,GO:1901362,GO:1901576,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902105,GO:1902107,GO:1902531,GO:1902532,GO:1902533,GO:1902679,GO:1902680,GO:1902692,GO:1902806,GO:1902808,GO:1903010,GO:1903506,GO:1903507,GO:1903508,GO:1903578,GO:1903706,GO:1903707,GO:1903708,GO:1905207,GO:1905314,GO:1990705,GO:2000026,GO:2000027,GO:2000043,GO:2000045,GO:2000047,GO:2000048,GO:2000112,GO:2000113,GO:2000177,GO:2000179,GO:2000648,GO:2000736,GO:2001013,GO:2001141,GO:2001169,GO:2001204
Preferred nameNOTCH2
DescriptionNeurogenic locus notch homolog protein
COG categoryT
Max annot lvl33208|Metazoa
EggNOG OGsKOG1217@1|root,KOG1217@2759|Eukaryota,38BUP@33154|Opisthokonta,3BAFT@33208|Metazoa,3CRZB@33213|Bilateria,485Y1@7711|Chordata,48V3W@7742|Vertebrata,3JA3Y@40674|Mammalia,34ZWA@311790|Afrotheria
Evalue8.11e-06
Seed ortholog9371.XP_004717315.1
Hectar predicted targeting categoryother localisation
TranscriptId350260
TrackFilteredModels1
ProteinId349938
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349938gene_9919Tribonema minus UTEX_B_3156 geneContig_52 132874..137546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349938Trimin1|349938|estExt_Genemark1.C_Ctg_520019Tribonema minus UTEX_B_3156 polypeptideContig_52 132874..137534 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9919_1exon_9919_1Tribonema minus UTEX_B_3156 exonContig_52 132874..132917 +
exon_9919_2exon_9919_2Tribonema minus UTEX_B_3156 exonContig_52 134058..134189 +
exon_9919_3exon_9919_3Tribonema minus UTEX_B_3156 exonContig_52 135451..135583 +
exon_9919_4exon_9919_4Tribonema minus UTEX_B_3156 exonContig_52 136475..136609 +
exon_9919_5exon_9919_5Tribonema minus UTEX_B_3156 exonContig_52 137304..137546 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9919CDS_9919Tribonema minus UTEX_B_3156 CDSContig_52 132874..132917 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_9919UTR3_9919Tribonema minus UTEX_B_3156 three_prime_UTRContig_52 137535..137546 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9919 ID=mRNA_9919|Name=jgi.p|Trimin1|349938|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=687bp|location=Sequence derived from alignment at Contig_52:132874..137546+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGCCGGGCTGTGTCCATTGCTGGTCTGCTGCCCCAAAAACTGCCC
GCTGTGCGCGAACCGCGCCAACTGCCTCAAGAACGCGGACGACCCGTCGT
GCTGCCCGAAAAAAGACATCACGACGTCGCTGCAGCGCGTCGACACGGGC
CTGTCCGACATTGAGGTCTCCTGCAGGTACAAGGCGCCGCCCTGCACCAT
GCCACCCGCGGATGACCCGTGCGTCGGCCAGCACGGCGACAGGGTCGTGT
GCCTGCGCAACGCGCGCTGCGGCGTACGCTACGTCAGCGACGACCCCGGC
TACGTGCAGGGAACGTCAACTTCAGCCGACAACGGCTGCATCGGCACCGA
GTTCTACTGCAAGTGCCCCGAGGGCGTGACCGGGCGGCGCTGCGAGAGGA
AGTGCAAGAAGGGACAGACGGCGTGCGGCTACGGGTTCGACCCGGTCTGC
GTGAGGGTGGGCGAGCACTACGGCTACACCACCAAGTGCGTGCCCAAGGG
GCACCCCGAGAAGTGCTCGCCGAGCGCGTGGGCGCACCCGCAGCTGCCCG
ACCCCTGCCAGAACGGCGGCAAGTGCGTCAACCTCAACTACTGGCAGCAG
CCGTACAACGCCGCGTACGTGTGCCGCTGCGCCAAGGGGTTCCACGGGCC
GCTGTGCCAGTACAAGGACAAGTGACGACGCTCCTTT
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protein sequence of jgi.p|Trimin1|349938

>Trimin1|349938|estExt_Genemark1.C_Ctg_520019 ID=Trimin1|349938|estExt_Genemark1.C_Ctg_520019|Name=jgi.p|Trimin1|349938|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=225bp
MGAGLCPLLVCCPKNCPLCANRANCLKNADDPSCCPKKDITTSLQRVDTG
LSDIEVSCRYKAPPCTMPPADDPCVGQHGDRVVCLRNARCGVRYVSDDPG
YVQGTSTSADNGCIGTEFYCKCPEGVTGRRCERKCKKGQTACGYGFDPVC
VRVGEHYGYTTKCVPKGHPEKCSPSAWAHPQLPDPCQNGGKCVNLNYWQQ
PYNAAYVCRCAKGFHGPLCQYKDK*
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mRNA from alignment at Contig_52:132874..137546+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9919 ID=mRNA_9919|Name=jgi.p|Trimin1|349938|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4673bp|location=Sequence derived from alignment at Contig_52:132874..137546+ (Tribonema minus UTEX_B_3156 )
ATGGGTGCCGGGCTGTGTCCATTGCTGGTCTGCTGCCCCAAAAAGTGAGT CGCCCCCCCCCCCACCCCCCAAGAGTGAGTTACTCATGCCTTGCTTCCTG CAGGCATGCGCGGCGCGTCGTTCTAACAGTGGGTGCAACAGCGTGCGCCC GAGGGCGGCATATGTCAGTGCCCACATGCGCGGCAGTATCTCTGCGCTGT TGCTCCTCCCCGCGGCTGGCTGCAGCGGCTGTCGCTGCTGGTTACGACCG TGAACCTGCGGCAGACTCATTGAGGCAGGCAGTAGCATTTGTGTGTGCAT AATGCGGCACGCAGCAGTGGACTCCGCCCAGTGTCGGACCTCTGGACCGG GGCAGGCGCGTAATGTTCTTCAAGGTAGATCGGCGGCAAGCTGGCAGTGC TCATCTTACAGCACGTGGCGCAACCCCCGAGTCACTCACGCCCGTCCCCA GCCCCCCCCGTCCGCCCCTACCCCCCCTTCCCCAGCACAGCACTACATCA AGTACCCTGCGCTCAATAGACATTGCCCTCCTGCCGATGTTCGTTGTCGC CGCCGCTGCGTCGTAGCAGACGCTTCGCCTGCTGCGCGCTGCACCGCATG TTAGGCCTTACAAGCAAGGGGGCCCGGGGCTACGTAATATATGCCGTCAA GCAACGTTTCTAACTTGAAGCACTCCTCATTGCGCCTTGCTATGGCTGAC AGATGTGGTCCATGGAGATGTGCCAGATGGGGCCAGCGCATATCGGCGCC ATTGTCACGGTTGTGCGCCGCCAGCTCACTCACTCACTCACTCACTCACT CAGTGACACTCACTCTCTCACTCACTCACTCACTCTCAGCACTGCCAGGG ACTGTGGGGTGCTCAAATACTGCATTGAGCACGCACCGCGATTTTTGTGC ATCGGAGTATTGTGCTCATGGCAGTGGGACTGAGAAGCTCGCAATTATGC AGCTGATGGTTGGGCATGCTACGCACTCAGGCTGCTGTGCTGCCCGCCGG CTGCCCAGGGCCCGCTGCAGAGCAGAAAGTTGTGCGTCGACCATTTAATC AGGAGGCTCCGAGCCCAAGAAGTGCTGTACTAGGCCTGGTTGCACTTGGC TTTCAAGTGCAAATAGCATGTGCTAAGGGGCACACCGTATCGCCGCCATT GCTTTAAAATTTGTGGTACGCTTTGCTGTTGCAGCTGCCCGCTGTGCGCG AACCGCGCCAACTGCCTCAAGAACGCGGACGACCCGTCGTGCTGCCCGAA AAAAGACATCACGACGTCGCTGCAGCGCGTCGACACGGGCCTGTCCGACA TTGAGGTCTCCTGCAGGTGAATGAACAAACAAACCATCAGCACCTTTGCG CATTTTGATGTAGTTGCGCACCGCGCGCAATGTGGACATGACAGTTGCGT GCACGGCACATGTGCCACTGCGCTTATGACATGGACATTTTGTACCACTT CAAGTCTCCTGCAGGTGAGAAGAAGAGTCAATCAGCCCCACTTCGCACTC CACACTTGGGGTGCCTGTCGTGCTGCTCATACCGTATGCAGACATGTGGG CCTGCGTACTGAACAAGCATAAAGGCGACCCTAGAGACACAGAGCAGATG TGCCAGGTACAGGCCTTGTCGAGCTTGAGTGGCAGAGCAACATTCAGGAC ACAGAGACCAAAATACACGGTGCAACGCTTACATTTAGACTGCTGGCACT GCAGGTACAAGGACCACACACACAACTTGTAGTTGACGACAATATCTCAA GCGCAAACGAGCGCGGTGCCGGCCGGATGCTGAGCACTGATGTTGCAGGT ACACCCCCCCCCGCCTTGCGACGGTGCCACACACGGACCCTCTACTTCAG GTGCAGAGCACAAATCTCTAGCACTGACGCTGCAGGTGTTCCGCCCTGCA ACACGTCACCCACAGACGATAGATCTCGCTCACAACAGCGTCTGAGAGTC GAGCGCGAACGAGAGCGATGCTGGCTGCGTAGACTCTCGGAAGCGACCAT GGCAATGCGCAGTGATGCTGCAGGTGTTTCGCCCTGCATCACGCCACCCG CAGACAGTAGATCTCGCTCACAACAGCGTCTCCGAGTCGAGCGCGAACAA GTGCGGTGCTGACCGCGCTGTGTCGCAACTGCACTGCTGACTGCGCTGCG GCGATGCACTGCGCGCGGACGCTGCTGCAGGTGCAAGGCGCCGCGCTGCA CCGCGCCGCCTGCAACTGTTACAGATGCATGCAGAAACTCAACCTGCAAA GTGTTCACTGCCTGACTTGAAAGCACGGCTGCAGAGCAGTGCTGACTGCG TGGTGGCGATGGCGTGCTGAGCGCTGATGCTGCAGGTACAAGGCGCCAGA TACATGTAGGCACTTTACCTGCCAGTAACAAGCATTCGTTGCTTGACTTG AGATCATGGTTGAGAGCAATGCTGATGGCTGCGATGGCTTGCTGAGCGCT GACGCTGCAGGCACAAGGCGCCGCCCTGCACCACGCCGCCCGCGCACGAC AGGCCGTTCGAGCTCAACCTGCAAAGTACTTATCGGAGCCCTGAGCACTG ACATTGAGCACTACCGTGCTGCTGCAGGTACAAGGCGCCGCCCTGCACCA TGCCACCCGCGGATGACCCGTGCGTCGGCCAGCACGGCGACAGGGTCGTG TGCCTGCGCAACGCGCGCTGCGGCGTACGCTACGTCAGCGACGACCCCGG CTACGTGCAGGTACGACGCTCTCAGTAAGAACATGCGATCTGCGCACTGC CGGTGTGTGCTACCGCCATGGCCTTGTTCAAACTTCTCTGTGCTCTGATA GGGGGGTTTTGGCGCACTAGGCTACCCCCCCGGCTGCGTGCAGCTGCGCC GCCCTTGCGTGCTCGAGTGCCTTTGTCGTGTTGGCCCCAAGTCACAGGGG CTTTGAAGTAGTACGCCCCCCCGCTTTGGGCAGGTGCGCCCCGCCTGCGC CACCAAGTCTGGTCTTTGTCAGGAGCGTTCGTGATGTACTCAGTGTAGCA GGAACCTTCGCTTGTTGATTGCGCCTGCGTGGTAAAGGCAGCAGCACTTC CCTTTGCGCGCTGCCTGGTCAGACATTCTTGATCGGGTAGCCAGTTGCGC TACTGCGTCAAGCCTTGGTGGTGCTGCGGCTTCGCTGTTGCTGCGCGAAA TGCGGCCAAACCTGCAGGCCACGTCCCTGTTGCCCTGAACTGCTCTGCAC AAGCAACGCGTACGAGCCTTGTGACCCCCTCGGATGCCGTTCCCGCTCCT GCATCTGGGGCACGTTGACTTTGCCAGACGACGGCTGCAGTGGCACCAGG TTCTACTGCTTGAAGTATGCAGCGACCCCGCTGCTCGGATTGCGGCGCCA TGTGCTCTCTCACACACACACGCCATGAACTTGATATGCTCTTCGGCTGC CGCTCCCCCTCCCCCTCCAGGGTACGTCAACTTCGACCGACAACGGCTGC ATCGGCACCGAGTTCTACAGCTTGAAGGACGCAATGACCCTGCCGCTTGG ATTGCTCTTCCATTTGCTCTCTCTCTCTCTCACACACACACACACACACA CACACCATGAATCCGATGCACCCCTCATTGCTGCTCTCACTCCCCATCCA GGGAACGTCAACTTCAGCCGACAACGGCTGCATCGGCACCGAGTTCTACT GCAAGTGCCCCGAGGGCGTGACCGGGCGGCGCTGCGAGAGGAAGTGCAAG AAGGGACAGACGGCGTGCGGCTACGGGTTCGACCCGGTCCGCTCCAAGTA CTTCACGCCGAACACCATCTGCTGCGCGCGCGGAAAGGCGAGCCGTTGAA GTCGTGGAGTTGAAGTTTCTGTGCAGTTTTGTGCGCCTGCCATCGCGTGA CCGGCCGTCTCGCCATCTCTTCAACTGAGGCACCGCTGCCGTCCATGTAC ATAGGGCGTACGCCGTGCGCCCGCGCGTCCGCCGCGTGCTCTGCCCTTGC GATTTTCAGTGGATTGTTGCTTAGGGCGCGGACGTTCTTGTTGATCAGTC CTTGCTCAGGGCGCAGTGTCGCCCAGATGGTCGACGTTTCTCACAGCACG CTCAGAGCGCGAAGCGGCGCGCATGCGGGTGCCGCCACCCTGCCTGGTCA CCGATCCAGCAATTTCAAGTCATTGCGCCCAAGTGATGGGAGCCCGCAAC TGCTCACTGCGGCGCGCCGCCATACTGCGCGTGTGTTGTCTTGCAAGGGT ATGACACTGCAAAATACGGATTTGCCAACACTGGCAGTGGTGATATGCCT GGCGCCACTTGCAAATCGCCGGAGGAAGCAGCTGCGCACGCACGCACGCA CGAACACACCCCGTGCGCAACACGCACTATGTACGCCATTCAGCTGAAGT CGCTCTCAAGCAAACTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCTCCCCCCCCCCCACACACACCGGTGCAGGTCTGCGTGAGGGTGGGCGA GCACTACGGCTACACCACCAAGTGCGTGCCCAAGGGGCACCCCGAGAAGT GCTCGCCGAGCGCGTGGGCGCACCCGCAGCTGCCCGACCCCTGCCAGAAC GGCGGCAAGTGCGTCAACCTCAACTACTGGCAGCAGCCGTACAACGCCGC GTACGTGTGCCGCTGCGCCAAGGGGTTCCACGGGCCGCTGTGCCAGTACA AGGACAAGTGACGACGCTCCTTT
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Coding sequence (CDS) from alignment at Contig_52:132874..137546+

>mRNA_9919 ID=mRNA_9919|Name=jgi.p|Trimin1|349938|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=675bp|location=Sequence derived from alignment at Contig_52:132874..137546+ (Tribonema minus UTEX_B_3156 )
ATGGGTGCCGGGCTGTGTCCATTGCTGGTCTGCTGCCCCAAAAACTGCCC
GCTGTGCGCGAACCGCGCCAACTGCCTCAAGAACGCGGACGACCCGTCGT
GCTGCCCGAAAAAAGACATCACGACGTCGCTGCAGCGCGTCGACACGGGC
CTGTCCGACATTGAGGTCTCCTGCAGGTACAAGGCGCCGCCCTGCACCAT
GCCACCCGCGGATGACCCGTGCGTCGGCCAGCACGGCGACAGGGTCGTGT
GCCTGCGCAACGCGCGCTGCGGCGTACGCTACGTCAGCGACGACCCCGGC
TACGTGCAGGGAACGTCAACTTCAGCCGACAACGGCTGCATCGGCACCGA
GTTCTACTGCAAGTGCCCCGAGGGCGTGACCGGGCGGCGCTGCGAGAGGA
AGTGCAAGAAGGGACAGACGGCGTGCGGCTACGGGTTCGACCCGGTCTGC
GTGAGGGTGGGCGAGCACTACGGCTACACCACCAAGTGCGTGCCCAAGGG
GCACCCCGAGAAGTGCTCGCCGAGCGCGTGGGCGCACCCGCAGCTGCCCG
ACCCCTGCCAGAACGGCGGCAAGTGCGTCAACCTCAACTACTGGCAGCAG
CCGTACAACGCCGCGTACGTGTGCCGCTGCGCCAAGGGGTTCCACGGGCC
GCTGTGCCAGTACAAGGACAAGTGA
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