Trimin1|346793|estExt_Genemark1.C_Ctg_50091 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|346793
Unique NameTrimin1|346793|estExt_Genemark1.C_Ctg_50091
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length967
Homology
BLAST of jgi.p|Trimin1|346793 vs. uniprot
Match: A0A836CB22_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB22_9STRA)

HSP 1 Score: 1380 bits (3573), Expect = 0.000e+0
Identity = 926/926 (100.00%), Postives = 926/926 (100.00%), Query Frame = 0
Query:    1 MAGRPSGHWLPALTLDDSADVRQLACAFIGLPQPPTSAAPDSTEPHVIAALDCALSNVRAWSAGDFPAASDGTHGGNSSAFDDAHAKVPLALSIAAAAAMARSAAVPFPLAHSAARAASXXLQSXXXXXXXXXXXXXXGAACDNSTDAAEHALSSLVSSVQQRSDLWANLFATTPLRNGVRHASGSANAEPLDPLQQHGGXXXXXXXXXXXDADALSSRERHDXXXXXXXXXXXXXXXXXXXXXVVSSLLSVVALCEEGARRGREGRYACRDGYARDWALAVADLQFLKELLEAALKEGACPPDVHTAILDSLCFCLAVVPGAAQHAEQAAAAAVADXXXXXXXXXXXXXXXXXXXEAQXXXXXXXXXXXXXXXXXXXXXRAPTLGSKGAPRLGRRSQLAVLLAVLPYVEAAAAXXXXXXXXXXXXXXXXXXXXXNARPEQQPPALLAPVPWAASFARLDAEVGASPPPQRDGGTAGALPQRRSDDEGVQVAAXXXXAVHAVRAAWAQAPAVREAAXXXXXXXXXXXXXXXXXXXXXXARCTRLRGYLARHRQQAHFTAAAPALRAHVREATAREAPEPLRRLRAQLQAAERGSSGXXXXXXALAAARDFSAVLTGWPRPLASPLFLEGGGDDAGGEGHPEVLLLVAAGARRAPYPFAVXXXXXXXXXXXXHGLGGGGEAMGHLVPLLLPLARHWKVERRALGLDLLLLLAARGTPTEVNWHRALINEAALEAVKTADDAAVISLALVLGARLVQCAPATEAGAVAAALVRLAASMRGAALRLACVGGAAAVMHALRTSRGGDSPATAAALTLRLRALLAGLLPLIGPAMAPGGPPVQLAALSTLQRLLIHCWPRVRAHRARLLCCLVGARAFAARMQTPPPVADVPLEGVPPPEEGEGGEGDAGGWAEVESAAARVAALVVALSG 926
            MAGRPSGHWLPALTLDDSADVRQLACAFIGLPQPPTSAAPDSTEPHVIAALDCALSNVRAWSAGDFPAASDGTHGGNSSAFDDAHAKVPLALSIAAAAAMARSAAVPFPLAHSAARAASXXLQSXXXXXXXXXXXXXXGAACDNSTDAAEHALSSLVSSVQQRSDLWANLFATTPLRNGVRHASGSANAEPLDPLQQHGGXXXXXXXXXXXDADALSSRERHDXXXXXXXXXXXXXXXXXXXXXVVSSLLSVVALCEEGARRGREGRYACRDGYARDWALAVADLQFLKELLEAALKEGACPPDVHTAILDSLCFCLAVVPGAAQHAEQAAAAAVADXXXXXXXXXXXXXXXXXXXEAQXXXXXXXXXXXXXXXXXXXXXRAPTLGSKGAPRLGRRSQLAVLLAVLPYVEAAAAXXXXXXXXXXXXXXXXXXXXXNARPEQQPPALLAPVPWAASFARLDAEVGASPPPQRDGGTAGALPQRRSDDEGVQVAAXXXXAVHAVRAAWAQAPAVREAAXXXXXXXXXXXXXXXXXXXXXXARCTRLRGYLARHRQQAHFTAAAPALRAHVREATAREAPEPLRRLRAQLQAAERGSSGXXXXXXALAAARDFSAVLTGWPRPLASPLFLEGGGDDAGGEGHPEVLLLVAAGARRAPYPFAVXXXXXXXXXXXXHGLGGGGEAMGHLVPLLLPLARHWKVERRALGLDLLLLLAARGTPTEVNWHRALINEAALEAVKTADDAAVISLALVLGARLVQCAPATEAGAVAAALVRLAASMRGAALRLACVGGAAAVMHALRTSRGGDSPATAAALTLRLRALLAGLLPLIGPAMAPGGPPVQLAALSTLQRLLIHCWPRVRAHRARLLCCLVGARAFAARMQTPPPVADVPLEGVPPPEEGEGGEGDAGGWAEVESAAARVAALVVALSG
Sbjct:    1 MAGRPSGHWLPALTLDDSADVRQLACAFIGLPQPPTSAAPDSTEPHVIAALDCALSNVRAWSAGDFPAASDGTHGGNSSAFDDAHAKVPLALSIAAAAAMARSAAVPFPLAHSAARAASXXLQSXXXXXXXXXXXXXXGAACDNSTDAAEHALSSLVSSVQQRSDLWANLFATTPLRNGVRHASGSANAEPLDPLQQHGGXXXXXXXXXXXDADALSSRERHDXXXXXXXXXXXXXXXXXXXXXVVSSLLSVVALCEEGARRGREGRYACRDGYARDWALAVADLQFLKELLEAALKEGACPPDVHTAILDSLCFCLAVVPGAAQHAEQAAAAAVADXXXXXXXXXXXXXXXXXXXEAQXXXXXXXXXXXXXXXXXXXXXRAPTLGSKGAPRLGRRSQLAVLLAVLPYVEAAAAXXXXXXXXXXXXXXXXXXXXXNARPEQQPPALLAPVPWAASFARLDAEVGASPPPQRDGGTAGALPQRRSDDEGVQVAAXXXXAVHAVRAAWAQAPAVREAAXXXXXXXXXXXXXXXXXXXXXXARCTRLRGYLARHRQQAHFTAAAPALRAHVREATAREAPEPLRRLRAQLQAAERGSSGXXXXXXALAAARDFSAVLTGWPRPLASPLFLEGGGDDAGGEGHPEVLLLVAAGARRAPYPFAVXXXXXXXXXXXXHGLGGGGEAMGHLVPLLLPLARHWKVERRALGLDLLLLLAARGTPTEVNWHRALINEAALEAVKTADDAAVISLALVLGARLVQCAPATEAGAVAAALVRLAASMRGAALRLACVGGAAAVMHALRTSRGGDSPATAAALTLRLRALLAGLLPLIGPAMAPGGPPVQLAALSTLQRLLIHCWPRVRAHRARLLCCLVGARAFAARMQTPPPVADVPLEGVPPPEEGEGGEGDAGGWAEVESAAARVAALVVALSG 926          
BLAST of jgi.p|Trimin1|346793 vs. uniprot
Match: A0A6H5JC44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC44_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 8.090e-8
Identity = 71/232 (30.60%), Postives = 102/232 (43.97%), Query Frame = 0
Query:  678 GEAMGHLVPLLLPLARHWKVERRALGLDLLLLLAARGTPTEVNWHRALINEAALEAVKTAD-DAAVISLALVLGARLVQCAPAT--------EAGAVAAALVRLAASMRGA--ALRLACVGGAAAVMHALRTSRGGDS-----PATAAALT-LRLRALLAGLL--------PLIGPAMAPG--GPPV------QLAALSTLQRLLIHCWPRVRAHRARLLCCLVGARAFAAR 876
            G A+GH +PL LPLA  +    +A+G  LLL L A   P E+ WHR L+ E     ++    D +  +L +    RL++C+P          E   +  A   LA + R     ++   V GAAA++    T  G        PA    L  L++RA  A           P   P   P    PPV      + A+L  ++ L + CWPRV AH ++LLC L+      AR
Sbjct:  806 GAALGHALPLALPLADDYDPAHQAVGFSLLLRLFAEAPPAELGWHRGLLLEVLERGIRCGGRDPSASALCMTAAVRLLRCSPKNGXXXXXXXERAGIRIARETLAQAARATDGTVKAVMVCGAAALLEVPATGEGYAPCEFLRPALLCLLPILQVRADAAAFYSSTRAHDPPSHHPIPTPSRKSPPVSSRLDARAASLRAVRALCLSCWPRVHAHASKLLCSLLWTCGDCAR 1037          
BLAST of jgi.p|Trimin1|346793 vs. uniprot
Match: D7FT98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT98_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.070e-5
Identity = 61/206 (29.61%), Postives = 94/206 (45.63%), Query Frame = 0
Query:  678 GEAMGHLVPLLLPLARHWKVERRALGLDLLLLLAARGTPTEVNWHRALINEAALEAVKTAD-DAAVISLALVLGARLVQCAPAT------------EAGAVAAALVRLAASMRGA--ALRLACVGGAAAVMHALRTSRGGDSPATAAALTLRLRALLAGLLPLIGPAMAPGGPPVQLAALSTLQRLLIHCWPRVRAHRARLLCCLV 868
            G A+GH +PL LPLA  +    +A+G  LLL L A   P E+  HR L+ E     ++    D +  +L +    RL++ +               E   +  A   LA + R    A++   V GAAA++    T +G  +P         LR  L  LLP++           + A+L  ++ L + CWPRV AH ++LLC L+
Sbjct:  803 GAALGHALPLALPLADDYDPAHQAVGFSLLLRLFAEAPPAELGLHRGLLLEVLERGIRCGGRDPSASALCMAAVVRLLRRSXXXXXXXXXXXXXXXERAGIRIARETLAQAARATDGAVKAVMVCGAAALLEVPATGKG-YAPCEF------LRPALLCLLPILQSPPVSSRLDARAASLRAVRALCLSCWPRVHAHASKLLCSLL 1001          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|346793 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CB22_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JC44_9PHAE8.090e-830.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT98_ECTSI1.070e-529.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 887..906
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 181..238
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 461..487

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_5contigContig_5:893786..905273 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|346793mRNA_2341Tribonema minus UTEX_B_3156 mRNAContig_5 893786..905273 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|346793|estExt_Genemark1.C_Ctg_50091 ID=Trimin1|346793|estExt_Genemark1.C_Ctg_50091|Name=jgi.p|Trimin1|346793|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=967bp
MAGRPSGHWLPALTLDDSADVRQLACAFIGLPQPPTSAAPDSTEPHVIAA
LDCALSNVRAWSAGDFPAASDGTHGGNSSAFDDAHAKVPLALSIAAAAAM
ARSAAVPFPLAHSAARAASAALQSRRAAAAAATAADDSGAACDNSTDAAE
HALSSLVSSVQQRSDLWANLFATTPLRNGVRHASGSANAEPLDPLQQHGG
GGGSGSSSGGGDADALSSRERHDGGGGGSSGGGEADALSRRERHVVSSLL
SVVALCEEGARRGREGRYACRDGYARDWALAVADLQFLKELLEAALKEGA
CPPDVHTAILDSLCFCLAVVPGAAQHAEQAAAAAVADEQAATGDAEAAAA
AAAAAAEAQRAAAAMAQTSVLLLAATAAAARAPTLGSKGAPRLGRRSQLA
VLLAVLPYVEAAAAARAPSAALADALALAAAAAAANARPEQQPPALLAPV
PWAASFARLDAEVGASPPPQRDGGTAGALPQRRSDDEGVQVAAAAAAAVH
AVRAAWAQAPAVREAAAAVARALHEAPAVREAAAAAARARCTRLRGYLAR
HRQQAHFTAAAPALRAHVREATAREAPEPLRRLRAQLQAAERGSSGSGGG
GGALAAARDFSAVLTGWPRPLASPLFLEGGGDDAGGEGHPEVLLLVAAGA
RRAPYPFAVLLLIAAVVRRAPHGLGGGGEAMGHLVPLLLPLARHWKVERR
ALGLDLLLLLAARGTPTEVNWHRALINEAALEAVKTADDAAVISLALVLG
ARLVQCAPATEAGAVAAALVRLAASMRGAALRLACVGGAAAVMHALRTSR
GGDSPATAAALTLRLRALLAGLLPLIGPAMAPGGPPVQLAALSTLQRLLI
HCWPRVRAHRARLLCCLVGARAFAARMQTPPPVADVPLEGVPPPEEGEGG
EGDAGGWAEVESAAARVAALVVALSGASADAVLEEIGGSIAAARGVCRSV
AAAAAAATAAAPVVGS*
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