Trimin1|347358|estExt_Genemark1.C_Ctg_110041 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|347358
Unique Name	Trimin1\|347358\|estExt_Genemark1.C_Ctg_110041
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	403

Homology

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BLAST of jgi.p|Trimin1|347358 vs. uniprot
Match: A0A835ZF33_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF33_9STRA)

HSP 1 Score: 725 bits (1871), Expect = 8.530e-263
Identity = 393/393 (100.00%), Postives = 393/393 (100.00%), Query Frame = 0

Query:    1 MAAGASSSHLVIGLGALLQRSLTFAPPQGFQPGAVNTATVAEQSAGGQGQELAAALASLCSDVKLVQLVGGKSGQALCDALSLRHANIELLSTWTESPTRARYMLLDQRWGERTTVLEPDSTQISGAEQASLAQQVVQSTADTELASLSIMGDLPAGLSHDIYGQLLEGVLQGSKMGDVPVMLGSVAGAAAALNTGHDSLRIAAVRLFRLYPCSDHKMDASDLLRLANIDETLACTWMEXXXXXXXXXXXXXXXRLPWIAATHGMLPPVLFDRERYGEGEGKGEAAPAGAKGTRVSAFYRYHARIPDPGAAGVARLSAALLAAWASGRSVPDAFEAALVGVCGGEEGCVRCELVDCGGDDKGWDTLVGGGGGVSLGAPLLPDAEKMRPAQSSG 393
            MAAGASSSHLVIGLGALLQRSLTFAPPQGFQPGAVNTATVAEQSAGGQGQELAAALASLCSDVKLVQLVGGKSGQALCDALSLRHANIELLSTWTESPTRARYMLLDQRWGERTTVLEPDSTQISGAEQASLAQQVVQSTADTELASLSIMGDLPAGLSHDIYGQLLEGVLQGSKMGDVPVMLGSVAGAAAALNTGHDSLRIAAVRLFRLYPCSDHKMDASDLLRLANIDETLACTWMEXXXXXXXXXXXXXXXRLPWIAATHGMLPPVLFDRERYGEGEGKGEAAPAGAKGTRVSAFYRYHARIPDPGAAGVARLSAALLAAWASGRSVPDAFEAALVGVCGGEEGCVRCELVDCGGDDKGWDTLVGGGGGVSLGAPLLPDAEKMRPAQSSG
Sbjct:    1 MAAGASSSHLVIGLGALLQRSLTFAPPQGFQPGAVNTATVAEQSAGGQGQELAAALASLCSDVKLVQLVGGKSGQALCDALSLRHANIELLSTWTESPTRARYMLLDQRWGERTTVLEPDSTQISGAEQASLAQQVVQSTADTELASLSIMGDLPAGLSHDIYGQLLEGVLQGSKMGDVPVMLGSVAGAAAALNTGHDSLRIAAVRLFRLYPCSDHKMDASDLLRLANIDETLACTWMEXXXXXXXXXXXXXXXRLPWIAATHGMLPPVLFDRERYGEGEGKGEAAPAGAKGTRVSAFYRYHARIPDPGAAGVARLSAALLAAWASGRSVPDAFEAALVGVCGGEEGCVRCELVDCGGDDKGWDTLVGGGGGVSLGAPLLPDAEKMRPAQSSG 393

[Close]

BLAST of jgi.p|Trimin1|347358 vs. uniprot
Match: A0A7S2L182_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L182_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.070e-7
Identity = 63/200 (31.50%), Postives = 94/200 (47.00%), Query Frame = 0

Query:    6 SSSHLVIGLGALLQRSLTFAPPQGFQPGAVNTATVAEQSAGGQGQELAAALASLCSDVK--------LVQLVG-GKSGQALCDALSLRHANIELLSTWTESPTRARYMLLDQRWGERTTVLEPDSTQISGAEQASLAQQVVQSTADTELAS-LSIMGDLPAGLSHDIYGQLLEGVLQGSKMGDVPVMLGSVAGAAAALNT 195
            S+S +V+GL A LQ+     P    +PG V+ A  +E   GG+GQ++  A++ L S  K        L Q +G G  G A+  AL LR    + L+    +P R    ++ +   +  T L   S +++  E   L Q+V     D   AS + IMG +P G   D Y QL E ++      D  V++ SV G  A L T
Sbjct:   23 STSIVVVGLNAALQKRFILPPNTNLEPGNVHRAHNSETGVGGKGQDVGVAMSCLMSKEKQPRDDKVLLAQFLGMGPEGDAVSGALRLRRGLSDKLTIRNAAPLRTCTTIVGK---DCATELVETSGEVTEEELEQLGQKVESLVNDGGKASGVCIMGSMPPGCGDDTYAQLSEKMVGK----DTLVLIDSVIGLDALLKT 215

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|347358 vs. uniprot

BLAST of jgi.p|Trimin1|347358 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835ZF33_9STRA	8.530e-263	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S2L182_9STRA	1.070e-7	31.50	Hypothetical protein n=1 Tax=Skeletonema marinoi T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029056	Ribokinase-like	GENE3D	3.40.1190.20		coord: 10..204 e-value: 7.5E-22 score: 79.8
IPR029056	Ribokinase-like	SUPERFAMILY	53613	Ribokinase-like	coord: 28..337
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 378..402

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_11	contig	Contig_11:356652..361616 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347358	mRNA_4728	Tribonema minus UTEX_B_3156	mRNA	Contig_11 356496..361616 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|347358|estExt_Genemark1.C_Ctg_110041 ID=Trimin1|347358|estExt_Genemark1.C_Ctg_110041|Name=jgi.p|Trimin1|347358|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=403bp
MAAGASSSHLVIGLGALLQRSLTFAPPQGFQPGAVNTATVAEQSAGGQGQ
ELAAALASLCSDVKLVQLVGGKSGQALCDALSLRHANIELLSTWTESPTR
ARYMLLDQRWGERTTVLEPDSTQISGAEQASLAQQVVQSTADTELASLSI
MGDLPAGLSHDIYGQLLEGVLQGSKMGDVPVMLGSVAGAAAALNTGHDSL
RIAAVRLFRLYPCSDHKMDASDLLRLANIDETLACTWMEDSLRIAAARLF
RLYPRLPWIAATHGMLPPVLFDRERYGEGEGKGEAAPAGAKGTRVSAFYR
YHARIPDPGAAGVARLSAALLAAWASGRSVPDAFEAALVGVCGGEEGCVR
CELVDCGGDDKGWDTLVGGGGGVSLGAPLLPDAEKMRPAQSSGSDDKGWD
TL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR029056	Ribokinase-like