Trimin1|349732|estExt_Genemark1.C_Ctg_470113 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|349732
Unique Name	Trimin1\|349732\|estExt_Genemark1.C_Ctg_470113
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	734

Homology

[Close]

BLAST of jgi.p|Trimin1|349732 vs. uniprot
Match: A0A836CBG1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBG1_9STRA)

HSP 1 Score: 759 bits (1961), Expect = 8.720e-266
Identity = 733/733 (100.00%), Postives = 733/733 (100.00%), Query Frame = 0

Query:    1 MAPVFCPPVGPNGFIDPLYFPGRIFAPSIPPLPPPPGVXXXXXXGVQVXXXGMPFXXXXXXXXXXXLGPTLSAGRLTNTTAAGDSGGAAKGDLGGPFGVPLGPGPPVGIFSPVLNIPPLEPAFCYLWNFLCVPPPHTARAHAHLDFNCEYLFSAYDIAFGGVPFAVWYDSPEHCGHFLDHLLAANGVNVAKARATSNGGAAEIAAVLGHFGGSIGTNSTMGSPERCNMGCGSCGRKLRRTSVQRAGRVGSAAQAFLTKNIAHLTLHGPFESDPMLALAAGLGATDNLSSFFRDVKVMDLYWPGAGLPHIPRSLRELHLHLGYADLGPDLVCGPLTLTSLSFDTGVARLPDSIGTLPTLTALTLHNCSRVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLSGTSLVSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLILSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLDCFALAAXXXXXXXXXXXXTRHLSGXRALTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFSGSTYATAVLSLRALPLPLLLPLLLVAVVPVPSLPXXXXXXXXPLAAAVEERRFSKAIHR 733
            MAPVFCPPVGPNGFIDPLYFPGRIFAPSIPPLPPPPGVXXXXXXGVQVXXXGMPFXXXXXXXXXXXLGPTLSAGRLTNTTAAGDSGGAAKGDLGGPFGVPLGPGPPVGIFSPVLNIPPLEPAFCYLWNFLCVPPPHTARAHAHLDFNCEYLFSAYDIAFGGVPFAVWYDSPEHCGHFLDHLLAANGVNVAKARATSNGGAAEIAAVLGHFGGSIGTNSTMGSPERCNMGCGSCGRKLRRTSVQRAGRVGSAAQAFLTKNIAHLTLHGPFESDPMLALAAGLGATDNLSSFFRDVKVMDLYWPGAGLPHIPRSLRELHLHLGYADLGPDLVCGPLTLTSLSFDTGVARLPDSIGTLPTLTALTLHNCSRVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLSGTSLVSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLILSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLDCFALAAXXXXXXXXXXXXTRHLSGXRALTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFSGSTYATAVLSLRALPLPLLLPLLLVAVVPVPSLPXXXXXXXXPLAAAVEERRFSKAIHR
Sbjct:    1 MAPVFCPPVGPNGFIDPLYFPGRIFAPSIPPLPPPPGVXXXXXXGVQVXXXGMPFXXXXXXXXXXXLGPTLSAGRLTNTTAAGDSGGAAKGDLGGPFGVPLGPGPPVGIFSPVLNIPPLEPAFCYLWNFLCVPPPHTARAHAHLDFNCEYLFSAYDIAFGGVPFAVWYDSPEHCGHFLDHLLAANGVNVAKARATSNGGAAEIAAVLGHFGGSIGTNSTMGSPERCNMGCGSCGRKLRRTSVQRAGRVGSAAQAFLTKNIAHLTLHGPFESDPMLALAAGLGATDNLSSFFRDVKVMDLYWPGAGLPHIPRSLRELHLHLGYADLGPDLVCGPLTLTSLSFDTGVARLPDSIGTLPTLTALTLHNCSRVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLSGTSLVSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLILSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLDCFALAAXXXXXXXXXXXXTRHLSGXRALTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFSGSTYATAVLSLRALPLPLLLPLLLVAVVPVPSLPXXXXXXXXPLAAAVEERRFSKAIHR 733

[Close]

BLAST of jgi.p|Trimin1|349732 vs. uniprot
Match: A0A836CBF3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBF3_9STRA)

HSP 1 Score: 172 bits (437), Expect = 1.730e-42
Identity = 96/163 (58.90%), Postives = 107/163 (65.64%), Query Frame = 0

Query:  248 VGSAAQAFLTKNIAHLTLHGPFESDPMLALAAGLGATDNLSSFFRDVKVMDLYWPGAGLPHIPRSLRELHLHLGYADLGPDLVC----------------------------------------GPLTLTSLSFDTGVARLPDSIGTLPTLTALTLHNCSRVT 370
            V SAAQAFLTKNI +LTL+GPF SDPMLALAA  GAT+NLSSFFRDVKVM+LYWPGAGLPHIPRSLRELHLHLGYAD    +VC                                        GP TLTSLSF +G++ LPDSIG +PTLTALTL +  +VT
Sbjct:   36 VASAAQAFLTKNIGYLTLNGPFGSDPMLALAAAAGATENLSSFFRDVKVMNLYWPGAGLPHIPRSLRELHLHLGYADCSSLVVCALVHVAARSTHPPCLQTGAKMPASTLPAHDAAVPPADGDFGPSTLTSLSFASGISSLPDSIGKVPTLTALTLRDNHQVT 198

[Close]

BLAST of jgi.p|Trimin1|349732 vs. uniprot
Match: A0A836CBL1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBL1_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 5.820e-8
Identity = 61/188 (32.45%), Postives = 74/188 (39.36%), Query Frame = 0

Query:    1 MAPVFCPPVGPNGFIDPLYFPGRIFAPSIPPLPPPPGVXXXXXXGVQVXXXGMPFXXXXXXXXXXXLGPTLSAGRLTNTTAAGDSGGAAKGDLG-----------GPFGVPLGPGPPVGIFSPVLNIPPLEPAFCYLWNFLCVPPPHTARAHAHLDFNCEYLFSAYDIAFGGVPFAVWYDSPEHCGHF 177
            MA V CPP+ P G   P  FPG   AP  P              G   XXX  P            +GP+  +      ++A  SG                   GP GV  G            + PPLEPAFCY WNF C P   T R H H D +C YL  A  + +GG  F  W+   ++CGHF
Sbjct:   70 MATVICPPLPPTGLFPPTIFPGPYVAPPFP-------------IGXXXXXXXXP--------GISSVGPSSPS-----VSSASPSGSVXXXXXXXXXXXXXXXXXGPIGV--GXXXXXXXXXXXXDFPPLEPAFCYFWNFKCSPMRRT-RHHPHKD-DCLYLAPAAAVGWGGPFFGKWF--VDNCGHF 225

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349732 vs. uniprot

BLAST of jgi.p|Trimin1|349732 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A836CBG1_9STRA	8.720e-266	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CBF3_9STRA	1.730e-42	58.90	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CBL1_9STRA	5.820e-8	32.45	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 288..685 e-value: 3.2E-73 score: 248.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..70
None	No IPR available	PANTHER	PTHR48051	FAMILY NOT NAMED	coord: 346..461 coord: 464..670 coord: 348..604
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 308..668

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_47	contig	Contig_47:827348..834185 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349732	mRNA_6294	Tribonema minus UTEX_B_3156	mRNA	Contig_47 827231..834211 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|349732|estExt_Genemark1.C_Ctg_470113 ID=Trimin1|349732|estExt_Genemark1.C_Ctg_470113|Name=jgi.p|Trimin1|349732|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=734bp
MAPVFCPPVGPNGFIDPLYFPGRIFAPSIPPLPPPPGVPPPPPPGVQVPP
PGMPFAPPPAVPPPPPLGPTLSAGRLTNTTAAGDSGGAAKGDLGGPFGVP
LGPGPPVGIFSPVLNIPPLEPAFCYLWNFLCVPPPHTARAHAHLDFNCEY
LFSAYDIAFGGVPFAVWYDSPEHCGHFLDHLLAANGVNVAKARATSNGGA
AEIAAVLGHFGGSIGTNSTMGSPERCNMGCGSCGRKLRRTSVQRAGRVGS
AAQAFLTKNIAHLTLHGPFESDPMLALAAGLGATDNLSSFFRDVKVMDLY
WPGAGLPHIPRSLRELHLHLGYADLGPDLVCGPLTLTSLSFDTGVARLPD
SIGTLPTLTALTLHNCSRVTGLPDSVGELAALTTLTLRSCDRLSGLPDSI
RGLSQLTTLSLQDCIGLRLLPDCISGLTTLATLDLSGTSLVSVPETIGGL
PALTALNLDGCRALSSLPDSLGSLSALTTLGLSGTSLVSVPKTIGGLPAL
TALNLDSCSALARLPESLGSLATLTTLILSNCGALTRLPESLGSLAALAT
LNLCRCSGLRHLPHSIGDLAALLTLNLNGCGSLQVLPDAIGRLATLTALR
LSYCSSLDCFALAALPETMGELAALTTRHLSGCRALTRLPESIGELAALT
ALNLYACRALPQLPRSIGALASFSGSTYATAVLSLRALPLPLLLPLLLVA
VVPVPSLPPPPPLLLLPLAAAVEERRFSKAIHR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf