mRNA_6183 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349671
Unique NamemRNA_6183
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|349671 vs. uniprot
Match: A0A835YU31_9STRA (Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU31_9STRA)

HSP 1 Score: 1149 bits (2973), Expect = 0.000e+0
Identity = 763/763 (100.00%), Postives = 763/763 (100.00%), Query Frame = 1 
Query:    1 MSGTEAPPPEESHTAVGDKRSHAAAGLPSVEESDTTGWAAFQKCKDDWFDPKANASDAAAAQEEREVLTNVLDSLEGIAAGAYEAETYPTFPDLWLPCRPGGIMSKLPSVAVDAHGVAWLVNERHTEESAAELLLTLLPAVAEKVEVAAGSLALVNETMQDLLLSVKAGFDPIPPRVFMFIRSACNPAEGIGRASFINRSAMKLANLDYLMQLVVTPPPAPLXXXXXXXXXTPPVHCTLCGMRSATGGAHPPPSRWLDVCAGPGGFTEYICWKLDRRRRQAGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAPLGFGWGMTLSAHADASVAQERSDWQLQHLRALNAAVCHGGDHEGPARTMPPRPALPXXXXXXXXXXAQAXXXEATHAVVAAGQAEVSGAPEXXXXXXXXXXXXXXXXXXXXXXXXXAVEDVATHFRTTYARDGTGDVTREANLAYFAQLVDEESGGGGVDLAMADGGTAAARHAPSQEHALSLLVVCEARAALAALRRGGSFVIKLFGTEGALTAGLVLALSAAFMRVAVVKPLTSRPASAERFLVCRGLLLGRDALVPLLRRLETVAEQLRERHGAAVAAAXXXADAGATIPAGREPELCIVRASMLTATGGXXXXXXXXXXXXXXXXXXXXXXXXGGTSEVAMLPYLRRVNDALMRLQLAACSAIAAEAADGNLHFPEGPGKWQRRRTREQRLLSACERTWGIV 2289
            MSGTEAPPPEESHTAVGDKRSHAAAGLPSVEESDTTGWAAFQKCKDDWFDPKANASDAAAAQEEREVLTNVLDSLEGIAAGAYEAETYPTFPDLWLPCRPGGIMSKLPSVAVDAHGVAWLVNERHTEESAAELLLTLLPAVAEKVEVAAGSLALVNETMQDLLLSVKAGFDPIPPRVFMFIRSACNPAEGIGRASFINRSAMKLANLDYLMQLVVTPPPAPLXXXXXXXXXTPPVHCTLCGMRSATGGAHPPPSRWLDVCAGPGGFTEYICWKLDRRRRQAGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAPLGFGWGMTLSAHADASVAQERSDWQLQHLRALNAAVCHGGDHEGPARTMPPRPALPXXXXXXXXXXAQAXXXEATHAVVAAGQAEVSGAPEXXXXXXXXXXXXXXXXXXXXXXXXXAVEDVATHFRTTYARDGTGDVTREANLAYFAQLVDEESGGGGVDLAMADGGTAAARHAPSQEHALSLLVVCEARAALAALRRGGSFVIKLFGTEGALTAGLVLALSAAFMRVAVVKPLTSRPASAERFLVCRGLLLGRDALVPLLRRLETVAEQLRERHGAAVAAAXXXADAGATIPAGREPELCIVRASMLTATGGXXXXXXXXXXXXXXXXXXXXXXXXGGTSEVAMLPYLRRVNDALMRLQLAACSAIAAEAADGNLHFPEGPGKWQRRRTREQRLLSACERTWGIV
Sbjct:    1 MSGTEAPPPEESHTAVGDKRSHAAAGLPSVEESDTTGWAAFQKCKDDWFDPKANASDAAAAQEEREVLTNVLDSLEGIAAGAYEAETYPTFPDLWLPCRPGGIMSKLPSVAVDAHGVAWLVNERHTEESAAELLLTLLPAVAEKVEVAAGSLALVNETMQDLLLSVKAGFDPIPPRVFMFIRSACNPAEGIGRASFINRSAMKLANLDYLMQLVVTPPPAPLXXXXXXXXXTPPVHCTLCGMRSATGGAHPPPSRWLDVCAGPGGFTEYICWKLDRRRRQAGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAPLGFGWGMTLSAHADASVAQERSDWQLQHLRALNAAVCHGGDHEGPARTMPPRPALPXXXXXXXXXXAQAXXXEATHAVVAAGQAEVSGAPEXXXXXXXXXXXXXXXXXXXXXXXXXAVEDVATHFRTTYARDGTGDVTREANLAYFAQLVDEESGGGGVDLAMADGGTAAARHAPSQEHALSLLVVCEARAALAALRRGGSFVIKLFGTEGALTAGLVLALSAAFMRVAVVKPLTSRPASAERFLVCRGLLLGRDALVPLLRRLETVAEQLRERHGAAVAAAXXXADAGATIPAGREPELCIVRASMLTATGGXXXXXXXXXXXXXXXXXXXXXXXXGGTSEVAMLPYLRRVNDALMRLQLAACSAIAAEAADGNLHFPEGPGKWQRRRTREQRLLSACERTWGIV 763
[Close]
BLAST of jgi.p|Trimin1|349671 vs. uniprot
Match: A0A6H5L378_9PHAE (Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L378_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 3.190e-28
Identity = 132/459 (28.76%), Postives = 168/459 (36.60%), Query Frame = 1 
Query:  475 MQDLLLSVKAGFDPIPPRVFMFIRSACNPAEGIGRASFINRSAMKLANLDYLMQLVVTPPPAPLXXXXXXXXXTPPVHCTLCGMRSATGGA-HP-----PPSRWLDVCAGPGGFTEYICWKLDRRRRQAGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAPLGFGWGMTLSAHADASVAQERSDWQLQHLRA---LNAAVCHGGDHEGPARTMPPRPALPXXXXXXXXXXAQAXXXEATHAVVAAGQAEVSGAPEXXXXXXXXXXXXXXXXXXXXXXXXXAVEDVATHFRTTYARDGTGDVTREANLAYFAQLVDEESGGGGVDLAMADGGTAAARHAPSQEHALSLLVVCEARAALAALRRGGSFVIKLFGTEGALTAGLVLALSAAFMRVAVVKPLTSRPASAERFLVCRGLL 1824
            + + L SVK  FD IP  VF   RSACNPAE +GR SF+NRSAMKLAN+D ++  ++T P              P      C +        HP     PP  + D+C GPGGF+EY+     RRRR+ G                                                                          P   G   + S        ++   W+L HL+    +  +    GD     RT                                     VSG  +                         A           Y  +GTGD+T  AN+  F + +   +GG  +DL +ADGG  AAR A  QE  LS LV  EA  AL  LR  GSFV KLF      TA L+  L   F R+A+VKP+TSRPAS ER+LVC G L
Sbjct:  184 LHEQLSSVKRDFDEIPAAVFKRARSACNPAEALGRGSFLNRSAMKLANIDAIVGGLLTLPCGGSHEQGLGEEGKPAALDKGCHVEPQQPKTPHPSLPAAPPLLFADLCGGPGGFSEYLL----RRRRKLGLPARGWGISLLRVGDKSDRGNNNDDDAVRVHGSPSTMKVGVNDGKDHCRISALPKDEQNGDPSTRKGDSSVQEGPSRGGEEQSESRRTKKKEVEDPCAWRLDHLKPWCRVAVSTAGTGDETPLTRTT------------------------------------VSGGDDGHKHATTTT----------------AAGPALLEMNIDYGPNGTGDLTDVANIQGFVEAIVASTGGQYLDLVVADGGFGAARDALQQEGLLSPLVHAEALTALLLLREEGSFVCKLFECWTESTAALLYLLHRKFRRIAIVKPITSRPASGERYLVCMGFL 586
[Close]
BLAST of jgi.p|Trimin1|349671 vs. uniprot
Match: D8LL77_ECTSI (Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL77_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 3.620e-28
Identity = 154/556 (27.70%), Postives = 199/556 (35.79%), Query Frame = 1 
Query:  325 SVAVDAHGVAWLVNER--------------------HTEES---------AAELLLTLLPAVAEKVEVAAGSLALVNETMQDLLL------------SVKAGFDPIPPRVFMFIRSACNPAEGIGRASFINRSAMKLANLDYLMQLVVTPPPAPLXXXXXXXXXTPPVHCTLCGMRSATGGA-HP-----PPSRWLDVCAGPGGFTEYICWKLDRRRRQAGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAPLGFGWGMTLSAHADASVAQERSDWQLQHLRALNAAVCHG-GDHEGPARTMPPRPALPXXXXXXXXXXAQAXXXEATHAVVAAGQAEVSGAP--------EXXXXXXXXXXXXXXXXXXXXXXXXXAVEDVATHFRTTYARDGTGDVTREANLAYFAQLVDEESGGGGVDLAMADGGTAAARHAPSQEHALSLLVVCEARAALAALRRGGSFVIKLFGTEGALTAGLVLALSAAFMRVAVVKPLTSRPASAERFLVCRGLL 1824
            +V +D  GVAWL+N                       T+E          AAE  L   P+  +      G L   +ET  ++L             SVK  FD IP  VF   RSACNPAE +GR SF+NRSAMKLAN+D ++  ++T P              P      C +        HP     PP  + D+C GPGGF+EY+     RRRR+ G                                                                              GWG++L    D S     +D      +   +A+  G  D   P R                               ++  + E SG P        E                         A   +  H    Y  +GTGD+T EAN+  F + +   +G   +DL +ADGG  AAR A  QE  LS LV  EA  AL  LR  GSFV KLF      TA L+  L   F R+A+VKP+ SRPAS ER+LVC G L
Sbjct:   92 NVEIDEAGVAWLINTSTQGHPSSGCTTHDGSIRSVPETQECCDSTPLQRVAAEASLAPEPSRVQARHDRGGGLQAASETSSNVLFGARETCLHEQLSSVKRDFDEIPAAVFKRARSACNPAEALGRGSFLNRSAMKLANIDAIVDGLLTLPCVGSNEQGLGEEGKPAALDKGCHVEPLQPKKPHPSLPAAPPLLFADLCGGPGGFSEYLL----RRRRKLGLPAR--------------------------------------------------------------------------GWGISLRQVGDKSYRGNNNDGDTVRFQDGRSAMKVGVNDDRDPCR-------------------------------ISFSKDEPSGDPSWRKGTGDETPLTPSTLSGGDVRAKRTTTIVTAAAAPSLEMHI--DYGPNGTGDLTDEANIQGFVEAIRTSTGEKYLDLVVADGGFGAARDALQQERLLSPLVHAEALTALLLLREEGSFVCKLFECWTESTAALLYLLHRKFRRIAIVKPIASRPASGERYLVCTGFL 536
[Close]
BLAST of jgi.p|Trimin1|349671 vs. uniprot
Match: A0A433PWH9_9FUNG (Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PWH9_9FUNG)

HSP 1 Score: 108 bits (269), Expect = 1.560e-20
Identity = 65/157 (41.40%), Postives = 91/157 (57.96%), Query Frame = 1 
Query: 1429 DVATHFRTTYARDGTGDVTREANLAYFAQLVDEESGGGGVDLAMADGGTAAARHAPSQEHALSLLVVCEARAALAALRRGGSFVIKLFGTEGALTAGLVLALSAAFMRVAVVKPLTSRPASAERFLVCRGLLLG---RDALVPLLRRLET-VAEQLR 1887
            D A  FR     DGTGD+  EAN+  FA+++ E +GG GVDL +ADGG     H   QEH    LV+C+    L  L +GG+ V+KLF      T GL+  L   F  + + KP+ SRPA++ER++VCR +L     RDA+V  L  +   +A+QL+
Sbjct:  348 DAAGCFRVVDGIDGTGDLYNEANMREFARVISEATGGRGVDLVVADGGFDFTGHEAEQEHVARRLVLCQIATTLMCLGKGGTLVLKLFDLFRPFTVGLIWLLRQHFEGICITKPVVSRPANSERYIVCRNILTPISHRDAVVEHLLAVNARMAKQLK 504
[Close]
BLAST of jgi.p|Trimin1|349671 vs. uniprot
Match: A0A5J4W8L4_9EUKA (Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 (Fragment) n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4W8L4_9EUKA)

HSP 1 Score: 98.6 bits (244), Expect = 1.600e-18
Identity = 56/128 (43.75%), Postives = 74/128 (57.81%), Query Frame = 1 
Query: 1444 FRTTYARDGTGDVTREANLAYFAQLVDEESGGGGVDLAMADGGTAAARHAPSQEHALSLLVVCEARAALAALRRGGSFVIKLFGTEGALTAGLVLALSAAFMRVAVVKPLTSRPASAERFLVCRGLLL 1827
            F   Y     GDVTREAN+  F Q++  + GG GV L  ADGG +      SQE  L  LV+C+   AL  LR+GG+F+ K+F      T  L   LS  F    ++KPL SRPA++ER+++CRG LL
Sbjct:   38 FHPIYGPHSNGDVTREANIRAFRQVIMTQKGGIGVSLVTADGGFSVDDDYNSQELKLRQLVLCQFTTALGILRQGGTFLCKIFDVYTPFTVELFYLLSTVFSSFTIIKPLQSRPANSERYILCRGFLL 165
[Close]
BLAST of jgi.p|Trimin1|349671 vs. uniprot
Match: A0A5J4X627_9EUKA (Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4X627_9EUKA)

HSP 1 Score: 102 bits (253), Expect = 2.300e-18
Identity = 60/150 (40.00%), Postives = 86/150 (57.33%), Query Frame = 1 
Query: 1444 FRTTYARDGTGDVTREANLAYFAQLVDEESGGGGVDLAMADGGTAAARHAPSQEHALSLLVVCEARAALAALRRGGSFVIKLFGTEGALTAGLVLALSAAFMRVAVVKPLTSRPASAERFLVCRGLLLGRDALVPLLRRLETVAEQLRER 1893
            F   Y     GDVTREAN+  F Q++  ++GG GV L  ADGG +      SQE  L  LV+C+   AL  LR+GG+F+ K+F      T  L+  LS  F   A++KPL SRPA++ER+++CRG LL    ++    R+    E++ E+
Sbjct:  444 FHPIYGPHSNGDVTREANIRAFRQVIMTQTGGIGVSLVTADGGFSVDDDYNSQELKLRQLVLCQFTTALGVLRQGGTFLCKIFDVYTPFTVELLYLLSTVFSSFAIIKPLQSRPANSERYVLCRGFLLD-QRMISETSRINKSKEKVMEK 592
[Close]
BLAST of jgi.p|Trimin1|349671 vs. uniprot
Match: A0A1X2HLK1_SYNRA (Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HLK1_SYNRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.470e-17
Identity = 61/151 (40.40%), Postives = 82/151 (54.30%), Query Frame = 1 
Query: 1429 DVATHFRTTYARDGTGDVTREANLAYFAQLVDEESGGGGVDLAMADGGTAAARHAPSQEHALSLLVVCEARAALAALRRGGSFVIKLFGTEGALTAGLVLALSAAFMRVAVVKPLTSRPASAERFLVCRGLLLGR-DALVPLLRRLETVAE 1878
            D+A  F     +DGTGD+ +EAN+ +F   V   + G  VDL +ADGG   +     QE     L++CE    L  LRRGG FV K F      TA LV  L   F  + + KPLTSRPA++ER+LVC+GL + R + L+  L  +    E
Sbjct:  226 DLARQFTCIDGQDGTGDLYKEANIRFFGDQVLAHTHGHPVDLVVADGGFDFSGQEEQQERISQRLILCEIITMLICLRRGGHFVCKFFDILHEFTADLVWLLYQLFDTICITKPLTSRPANSERYLVCKGLRVERPETLIAALIHVSNTME 376
[Close]
BLAST of jgi.p|Trimin1|349671 vs. uniprot
Match: A0A367J3Z9_RHIST (Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367J3Z9_RHIST)

HSP 1 Score: 97.4 bits (241), Expect = 2.060e-17
Identity = 58/134 (43.28%), Postives = 80/134 (59.70%), Query Frame = 1 
Query: 1426 EDVATHFRTTY-ARDGTGDVTREANLAYFAQLVDEESGGGGVDLAMADGGTAAARHAPSQEHALSLLVVCEARAALAALRRGGSFVIKLFGTEGALTAGLVLALSAAFMRVAVVKPLTSRPASAERFLVCRGLL 1824
            ED+  H  TT    DGTGD+ ++ N+  F   V +E+GG GV LA+ADGG   + +   QE  +  L++CE    L  L++GG FV K F      TA LV  L   F  + + KPL+SRPA+AER++VC+GLL
Sbjct:  286 EDIPRHSLTTVDGPDGTGDLYKQENIRAFESAVLKETGGKGVFLAVADGGFDFSGNEGQQETLVQQLLLCEIITMLCTLKKGGHFVCKFFDMLSTCTASLVWLLYQLFDEICITKPLSSRPANAERYVVCKGLL 419
[Close]
BLAST of jgi.p|Trimin1|349671 vs. uniprot
Match: A0A068SCN4_9FUNG (Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068SCN4_9FUNG)

HSP 1 Score: 96.3 bits (238), Expect = 3.010e-17
Identity = 57/137 (41.61%), Postives = 75/137 (54.74%), Query Frame = 1 
Query: 1429 DVATHFRTTYARDGTGDVTREANLAYFAQLVDEESGGGGVDLAMADGGTAAARHAPSQEHALSLLVVCEARAALAALRRGGSFVIKLFGTEGALTAGLVLALSAAFMRVAVVKPLTSRPASAERFLVCRGLLLGRDA 1839
            DV  +F      DGTGD+ R+AN+  F  +V + +   GVDL +ADGG         QE     L++CE    L  LRRGGSFV K F      TA LV  L   F  + + KPL+SRPA++ER++VC+ LL    A
Sbjct:  216 DVPLNFTKVDGVDGTGDLYRDANIREFGSIVQQYTRDRGVDLVVADGGFDFTGREMHQEQLARRLILCEIITMLTCLRRGGSFVCKFFDMSQQFTANLVWILYQLFDTICITKPLSSRPANSERYIVCKDLLTQHPA 352
[Close]
BLAST of jgi.p|Trimin1|349671 vs. uniprot
Match: A0A6A5BG82_NAEFO (Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BG82_NAEFO)

HSP 1 Score: 97.4 bits (241), Expect = 3.030e-17
Identity = 50/127 (39.37%), Postives = 79/127 (62.20%), Query Frame = 1 
Query: 1441 HFRTTYARDGTGDVTREANLAYFAQLVDEESGGGGVDLAMADGGTAAARHAPSQEHALSLLVVCEARAALAALRRGGSFVIKLFGTEGALTAGLVLALSAAFMRVAVVKPLTSRPASAERFLVCRGL 1821
            +F   Y  DGTGD+T+  N+   ++++D+ + G GV L  ADGG +      SQE+    LV+C+    L  LR+GGSFV KLF      +A L+  L   + ++ +VKP++SRPA++ER+++C+GL
Sbjct:  328 NFEVYYGEDGTGDITKNENIRALSKVIDQGTNGRGVALVTADGGFSVHGVENSQEYLTHQLVLCQILTGLMILRKGGSFVCKLFDLNTWFSASLIYILYQNYEKLMIVKPVSSRPANSERYIICKGL 454
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349671 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YU31_9STRA0.000e+0100.00Cap-specific mRNA (nucleoside-2'-O-)-methyltransfe... [more]
A0A6H5L378_9PHAE3.190e-2828.76Cap-specific mRNA (nucleoside-2'-O-)-methyltransfe... [more]
D8LL77_ECTSI3.620e-2827.70Cap-specific mRNA (nucleoside-2'-O-)-methyltransfe... [more]
A0A433PWH9_9FUNG1.560e-2041.40Cap-specific mRNA (nucleoside-2'-O-)-methyltransfe... [more]
A0A5J4W8L4_9EUKA1.600e-1843.75Cap-specific mRNA (nucleoside-2'-O-)-methyltransfe... [more]
A0A5J4X627_9EUKA2.300e-1840.00Cap-specific mRNA (nucleoside-2'-O-)-methyltransfe... [more]
A0A1X2HLK1_SYNRA1.470e-1740.40Cap-specific mRNA (nucleoside-2'-O-)-methyltransfe... [more]
A0A367J3Z9_RHIST2.060e-1743.28Cap-specific mRNA (nucleoside-2'-O-)-methyltransfe... [more]
A0A068SCN4_9FUNG3.010e-1741.61Cap-specific mRNA (nucleoside-2'-O-)-methyltransfe... [more]
A0A6A5BG82_NAEFO3.030e-1739.37Cap-specific mRNA (nucleoside-2'-O-)-methyltransfe... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_47contigContig_47:114934..118343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349671|estExt_Genemark1.C_Ctg_470014
BRITEko00000,ko00001,ko01000,ko01009,ko03019
KEGG rclassRC00003,RC00466
KEGG ReactionR03922
KEGG Pathwayko00562,ko01100,ko04070,map00562,map01100,map04070
KEGG koko:K14589,ko:K18081
EC2.1.1.57,3.1.3.64,3.1.3.95
Descriptioncap1 mRNA methylation
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3673@1|root,KOG3673@2759|Eukaryota
Evalue4.1e-29
Seed ortholog2880.D8LL77
Hectar predicted targeting categoryother localisation
TranscriptId349993
TrackFilteredModels1
ProteinId349671
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349671gene_6183Tribonema minus UTEX_B_3156 geneContig_47 114934..118343 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6183_1exon_6183_1Tribonema minus UTEX_B_3156 exonContig_47 114934..115413 +
exon_6183_2exon_6183_2Tribonema minus UTEX_B_3156 exonContig_47 115822..116487 +
exon_6183_3exon_6183_3Tribonema minus UTEX_B_3156 exonContig_47 116888..118343 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6183CDS_6183Tribonema minus UTEX_B_3156 CDSContig_47 114934..115413 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6183UTR3_6183Tribonema minus UTEX_B_3156 three_prime_UTRContig_47 118034..118343 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349671Trimin1|349671|estExt_Genemark1.C_Ctg_470014Tribonema minus UTEX_B_3156 polypeptideContig_47 114934..118033 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6183 ID=mRNA_6183|Name=jgi.p|Trimin1|349671|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2602bp|location=Sequence derived from alignment at Contig_47:114934..118343+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGGAACGGAAGCACCTCCGCCTGAGGAATCGCATACAGCTGTGGG
CGACAAGAGGAGCCACGCTGCAGCTGGTCTGCCATCAGTGGAAGAGTCAG
ATACAACAGGATGGGCAGCATTCCAAAAGTGCAAGGACGATTGGTTTGAC
CCCAAAGCGAATGCCAGCGATGCTGCAGCAGCGCAGGAGGAGAGGGAGGT
TCTCACCAATGTCTTGGACTCCCTGGAAGGCATAGCGGCCGGCGCATACG
AAGCTGAGACGTATCCCACTTTCCCGGACTTATGGCTTCCGTGCCGACCG
GGCGGAATCATGAGCAAACTGCCCAGCGTGGCAGTAGACGCACACGGCGT
AGCTTGGCTGGTGAATGAGAGACATACAGAGGAAAGTGCGGCAGAGCTCC
TGCTCACGCTGCTGCCTGCTGTGGCGGAGAAGGTGGAGGTAGCAGCGGGA
AGCCTGGCTCTGGTCAACGAGACGATGCAGGACCTCCTGCTGTCCGTCAA
GGCCGGGTTCGATCCCATTCCGCCGCGCGTCTTCATGTTCATCCGCAGCG
CGTGCAACCCTGCGGAGGGCATCGGGCGTGCATCCTTCATCAACCGCTCC
GCCATGAAACTGGCCAATCTCGACTACCTCATGCAGCTGGTCGTCACCCC
CCCGCCAGCCCCCCTGCCCCCTCCCAGCCCCGCAGCACCATCAACACCAC
CCGTGCACTGCACTTTGTGTGGCATGCGCTCTGCCACAGGGGGGGCACAC
CCGCCCCCCTCTCGCTGGCTGGACGTCTGTGCAGGGCCGGGGGGGTTCAC
GGAGTACATATGCTGGAAGCTCGATCGGCGCCGCAGGCAGGCTGGCAGTG
CCGCTGCCGTCAGCGCGGGGGCTACAGACGCCACTGCGGCTTCGCTCGCC
TACGCACAGGAGGGTAGTGGAGGGGGAGGGGGGGGCGGCGCCAGCAGCAC
CAGAGCTGGTGGTTATGGCGCGGAGGCGGGCCAGGGCCAGGCGCTGGTGG
CGTCGCAGTCTGCAGGCGCTGTTGCAGCAGCACGTGAAGATGCGGCGATG
GCGGCGGCGCGCAGTGCTCCGCTGGGGTTTGGCTGGGGCATGACCCTCAG
CGCGCACGCAGACGCATCCGTGGCACAGGAGCGCAGTGACTGGCAGCTGC
AGCACCTGCGAGCCCTGAACGCTGCCGTCTGCCACGGCGGCGACCACGAG
GGGCCCGCCCGCACCATGCCGCCGCGGCCAGCGCTGCCGCCGCCGCCGCC
CAGAGCAGCTGCCGCCGCTGCACAAGCCGCCGCTGCCGAGGCGACACACG
CAGTCGTGGCGGCAGGACAGGCGGAAGTCAGCGGCGCGCCAGAAGCTGTG
CAGGAGGCGGCGGAGGCGGCGGAGTGCGCGATAGCCGCGGCGGCGACGGC
AATGGCCGCGGCGGCGCCCGCCGTGGAGGACGTGGCAACGCACTTCAGGA
CGACGTACGCACGCGACGGAACGGGGGACGTGACCCGCGAAGCCAACCTG
GCCTATTTCGCGCAGCTGGTCGACGAGGAGAGCGGCGGCGGCGGTGTGGA
TCTGGCGATGGCGGATGGTGGCACTGCGGCGGCGCGCCACGCGCCCAGCC
AGGAGCACGCGCTGTCGCTGCTGGTGGTCTGCGAGGCGCGCGCGGCACTG
GCGGCGCTGCGCAGGGGCGGCTCCTTCGTCATCAAGCTGTTTGGCACGGA
GGGTGCGCTCACAGCGGGCCTGGTGCTGGCTCTGTCTGCGGCCTTCATGC
GCGTCGCCGTGGTCAAGCCTCTGACGTCGCGGCCTGCCAGTGCTGAGCGC
TTCCTCGTGTGCAGAGGGCTGCTCCTCGGCCGCGATGCGCTGGTGCCGCT
GCTCAGGCGCCTCGAGACCGTCGCTGAGCAGCTGAGAGAGCGTCACGGCG
CAGCGGTCGCGGCGGCAGCAGCAGCGGCGGATGCTGGTGCGACGATTCCT
GCGGGGCGCGAACCAGAGCTGTGCATCGTGCGAGCGAGCATGTTGACAGC
TACTGGCGGCGGTGGCAGCGGTGACGGCACCAGCGGCACTCATGCTGCCG
CGAGCAGCGGCGGAGGCGGCAGCAGCGGCAGTGGGGGGACGAGCGAGGTG
GCTATGCTGCCGTACCTGCGGCGTGTGAATGATGCGCTCATGCGGCTGCA
GCTGGCAGCTTGCTCAGCGATAGCTGCGGAGGCCGCGGACGGCAACCTGC
ACTTTCCGGAGGGTCCGGGCAAGTGGCAGCGGCGCCGCACACGTGAGCAG
CGGCTGCTGTCAGCCTGCGAGCGAACGTGGGGGATCGTGTAGGGCAACTA
GGTCAAGCGGGGCACACAGATGCTGCTGAGCGTATCTGGCCAGGAGCCTT
GTCACCTCGACTTGTGGTAGGAACCTGGCCTATGTGTGTAAATCACGGTC
GTTGTGTGATGGTGCTGAGGCATGCCACCAGAAAGGCTGCTTGCATCAGA
TAATCTGGCAACACATCTCTATGTCAGCGCTCTACTTGAGGTACATGAAT
GCTCAACTTGAAGGTTCTGTGGTCCGATAATCTGGCAACACATCTCTATG
TCAGCGCTCTACTTGAGGTACATGAGTGCTCAACTTGAAGGTTCTGTGGT
CC
back to top

protein sequence of jgi.p|Trimin1|349671

>Trimin1|349671|estExt_Genemark1.C_Ctg_470014 ID=Trimin1|349671|estExt_Genemark1.C_Ctg_470014|Name=jgi.p|Trimin1|349671|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=764bp
MSGTEAPPPEESHTAVGDKRSHAAAGLPSVEESDTTGWAAFQKCKDDWFD
PKANASDAAAAQEEREVLTNVLDSLEGIAAGAYEAETYPTFPDLWLPCRP
GGIMSKLPSVAVDAHGVAWLVNERHTEESAAELLLTLLPAVAEKVEVAAG
SLALVNETMQDLLLSVKAGFDPIPPRVFMFIRSACNPAEGIGRASFINRS
AMKLANLDYLMQLVVTPPPAPLPPPSPAAPSTPPVHCTLCGMRSATGGAH
PPPSRWLDVCAGPGGFTEYICWKLDRRRRQAGSAAAVSAGATDATAASLA
YAQEGSGGGGGGGASSTRAGGYGAEAGQGQALVASQSAGAVAAAREDAAM
AAARSAPLGFGWGMTLSAHADASVAQERSDWQLQHLRALNAAVCHGGDHE
GPARTMPPRPALPPPPPRAAAAAAQAAAAEATHAVVAAGQAEVSGAPEAV
QEAAEAAECAIAAAATAMAAAAPAVEDVATHFRTTYARDGTGDVTREANL
AYFAQLVDEESGGGGVDLAMADGGTAAARHAPSQEHALSLLVVCEARAAL
AALRRGGSFVIKLFGTEGALTAGLVLALSAAFMRVAVVKPLTSRPASAER
FLVCRGLLLGRDALVPLLRRLETVAEQLRERHGAAVAAAAAAADAGATIP
AGREPELCIVRASMLTATGGGGSGDGTSGTHAAASSGGGGSSGSGGTSEV
AMLPYLRRVNDALMRLQLAACSAIAAEAADGNLHFPEGPGKWQRRRTREQ
RLLSACERTWGIV*
back to top

mRNA from alignment at Contig_47:114934..118343+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6183 ID=mRNA_6183|Name=jgi.p|Trimin1|349671|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3410bp|location=Sequence derived from alignment at Contig_47:114934..118343+ (Tribonema minus UTEX_B_3156 )
ATGTCGGGAACGGAAGCACCTCCGCCTGAGGAATCGCATACAGCTGTGGG
CGACAAGAGGAGCCACGCTGCAGCTGGTCTGCCATCAGTGGAAGAGTCAG
ATACAACAGGATGGGCAGCATTCCAAAAGTGCAAGGACGATTGGTTTGAC
CCCAAAGCGAATGCCAGCGATGCTGCAGCAGCGCAGGAGGAGAGGGAGGT
TCTCACCAATGTCTTGGACTCCCTGGAAGGCATAGCGGCCGGCGCATACG
AAGCTGAGACGTATCCCACTTTCCCGGACTTATGGCTTCCGTGCCGACCG
GGCGGAATCATGAGCAAACTGCCCAGCGTGGCAGTAGACGCACACGGCGT
AGCTTGGCTGGTGAATGAGAGACATACAGAGGAAAGTGCGGCAGAGCTCC
TGCTCACGCTGCTGCCTGCTGTGGCGGAGAAGGTGGAGGTAGCAGCGGGA
AGCCTGGCTCTGGTCAACGAGACGATGCAGGTGCGCTATTCCGTTGCTGC
TCTACCTGTATTGTTCAAGAACGCATCACGTTTGTCGGCCTATCACCTGG
TTGTTCTACTTGTTGACTAAAGGACCCGATTTGAAGAGTGCAAGGGATGC
TTGGTGTAGTTCACACTGCATTCACTTCAGGTACTGAAATCTCTGGTTGC
AGCAGCTGATTATGCATGCCTCCTGGTTATCAATGCACGCCTCCTGGATA
TCAACACTGGCTGTGGTGGGCACATTGTCTGCAAGAGTTTTAGTTGTCTA
GTTCGATGCGCACTTGTTCAATGCAGGCAGCTCTTATCACTCATCAGCAC
AAGTTGTTGACCCTCCTGTCCGCGAGGCACATGTGGTCGCCATTGACACA
ATTGCACTACATCGTGCCGCTGCTGCTGCGCTGCGCAGGACCTCCTGCTG
TCCGTCAAGGCCGGGTTCGATCCCATTCCGCCGCGCGTCTTCATGTTCAT
CCGCAGCGCGTGCAACCCTGCGGAGGGCATCGGGCGTGCATCCTTCATCA
ACCGCTCCGCCATGAAACTGGCCAATCTCGACTACCTCATGCAGCTGGTC
GTCACCCCCCCGCCAGCCCCCCTGCCCCCTCCCAGCCCCGCAGCACCATC
AACACCACCCGTGCACTGCACTTTGTGTGGCATGCGCTCTGCCACAGGGG
GGGCACACCCGCCCCCCTCTCGCTGGCTGGACGTCTGTGCAGGGCCGGGG
GGGTTCACGGAGTACATATGCTGGAAGCTCGATCGGCGCCGCAGGCAGGC
TGGCAGTGCCGCTGCCGTCAGCGCGGGGGCTACAGACGCCACTGCGGCTT
CGCTCGCCTACGCACAGGAGGGTAGTGGAGGGGGAGGGGGGGGCGGCGCC
AGCAGCACCAGAGCTGGTGGTTATGGCGCGGAGGCGGGCCAGGGCCAGGC
GCTGGTGGCGTCGCAGTCTGCAGGCGCTGTTGCAGCAGCACGTGAAGATG
CGGCGATGGCGGCGGCGCGCAGTGCTCCGCTGGGGTTTGGCTGGGGCATG
ACCCTCAGCGCGCACGCAGACGCATCCGTGGCACAGGAGCGCAGTGACTG
GCAGGTGAACATTTGCCACCAATTGTGTCGAGCTTGCATACTATGCAGCT
GTAGTGGTGTTGTGCTGTCAGCCTAGCAGTGTCAGACACACATGATTCGT
ACTTGAAAGCACATTTGCAGCACTTCATGCAGGTAGTCCCATTGGCACAA
TTGCTGCCTGTGATGCACTCTCAAACGACACAGATGCCAGTCAATGCAAG
GTGCAATGGCACTTGCAGGCTGGCTCTGCAAGCAACCTGCAAGCATGATG
CATGTACCAGGACCTATGTATGCAGATGTAGCCTTGATTACTCAAAGGCA
ACCCTCTACCTTCACCATATTCCACATATGTACAATTGAAATTTATTCAC
ACACAGATCTGTGCTCATCGTGAATACCTGCACTCGTCACTCATCCCATT
ACAGCTGCAGCACCTGCGAGCCCTGAACGCTGCCGTCTGCCACGGCGGCG
ACCACGAGGGGCCCGCCCGCACCATGCCGCCGCGGCCAGCGCTGCCGCCG
CCGCCGCCCAGAGCAGCTGCCGCCGCTGCACAAGCCGCCGCTGCCGAGGC
GACACACGCAGTCGTGGCGGCAGGACAGGCGGAAGTCAGCGGCGCGCCAG
AAGCTGTGCAGGAGGCGGCGGAGGCGGCGGAGTGCGCGATAGCCGCGGCG
GCGACGGCAATGGCCGCGGCGGCGCCCGCCGTGGAGGACGTGGCAACGCA
CTTCAGGACGACGTACGCACGCGACGGAACGGGGGACGTGACCCGCGAAG
CCAACCTGGCCTATTTCGCGCAGCTGGTCGACGAGGAGAGCGGCGGCGGC
GGTGTGGATCTGGCGATGGCGGATGGTGGCACTGCGGCGGCGCGCCACGC
GCCCAGCCAGGAGCACGCGCTGTCGCTGCTGGTGGTCTGCGAGGCGCGCG
CGGCACTGGCGGCGCTGCGCAGGGGCGGCTCCTTCGTCATCAAGCTGTTT
GGCACGGAGGGTGCGCTCACAGCGGGCCTGGTGCTGGCTCTGTCTGCGGC
CTTCATGCGCGTCGCCGTGGTCAAGCCTCTGACGTCGCGGCCTGCCAGTG
CTGAGCGCTTCCTCGTGTGCAGAGGGCTGCTCCTCGGCCGCGATGCGCTG
GTGCCGCTGCTCAGGCGCCTCGAGACCGTCGCTGAGCAGCTGAGAGAGCG
TCACGGCGCAGCGGTCGCGGCGGCAGCAGCAGCGGCGGATGCTGGTGCGA
CGATTCCTGCGGGGCGCGAACCAGAGCTGTGCATCGTGCGAGCGAGCATG
TTGACAGCTACTGGCGGCGGTGGCAGCGGTGACGGCACCAGCGGCACTCA
TGCTGCCGCGAGCAGCGGCGGAGGCGGCAGCAGCGGCAGTGGGGGGACGA
GCGAGGTGGCTATGCTGCCGTACCTGCGGCGTGTGAATGATGCGCTCATG
CGGCTGCAGCTGGCAGCTTGCTCAGCGATAGCTGCGGAGGCCGCGGACGG
CAACCTGCACTTTCCGGAGGGTCCGGGCAAGTGGCAGCGGCGCCGCACAC
GTGAGCAGCGGCTGCTGTCAGCCTGCGAGCGAACGTGGGGGATCGTGTAG
GGCAACTAGGTCAAGCGGGGCACACAGATGCTGCTGAGCGTATCTGGCCA
GGAGCCTTGTCACCTCGACTTGTGGTAGGAACCTGGCCTATGTGTGTAAA
TCACGGTCGTTGTGTGATGGTGCTGAGGCATGCCACCAGAAAGGCTGCTT
GCATCAGATAATCTGGCAACACATCTCTATGTCAGCGCTCTACTTGAGGT
ACATGAATGCTCAACTTGAAGGTTCTGTGGTCCGATAATCTGGCAACACA
TCTCTATGTCAGCGCTCTACTTGAGGTACATGAGTGCTCAACTTGAAGGT
TCTGTGGTCC
back to top

Coding sequence (CDS) from alignment at Contig_47:114934..118343+

>mRNA_6183 ID=mRNA_6183|Name=jgi.p|Trimin1|349671|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2292bp|location=Sequence derived from alignment at Contig_47:114934..118343+ (Tribonema minus UTEX_B_3156 )
ATGTCGGGAACGGAAGCACCTCCGCCTGAGGAATCGCATACAGCTGTGGG
CGACAAGAGGAGCCACGCTGCAGCTGGTCTGCCATCAGTGGAAGAGTCAG
ATACAACAGGATGGGCAGCATTCCAAAAGTGCAAGGACGATTGGTTTGAC
CCCAAAGCGAATGCCAGCGATGCTGCAGCAGCGCAGGAGGAGAGGGAGGT
TCTCACCAATGTCTTGGACTCCCTGGAAGGCATAGCGGCCGGCGCATACG
AAGCTGAGACGTATCCCACTTTCCCGGACTTATGGCTTCCGTGCCGACCG
GGCGGAATCATGAGCAAACTGCCCAGCGTGGCAGTAGACGCACACGGCGT
AGCTTGGCTGGTGAATGAGAGACATACAGAGGAAAGTGCGGCAGAGCTCC
TGCTCACGCTGCTGCCTGCTGTGGCGGAGAAGGTGGAGGTAGCAGCGGGA
AGCCTGGCTCTGGTCAACGAGACGATGCAGGACCTCCTGCTGTCCGTCAA
GGCCGGGTTCGATCCCATTCCGCCGCGCGTCTTCATGTTCATCCGCAGCG
CGTGCAACCCTGCGGAGGGCATCGGGCGTGCATCCTTCATCAACCGCTCC
GCCATGAAACTGGCCAATCTCGACTACCTCATGCAGCTGGTCGTCACCCC
CCCGCCAGCCCCCCTGCCCCCTCCCAGCCCCGCAGCACCATCAACACCAC
CCGTGCACTGCACTTTGTGTGGCATGCGCTCTGCCACAGGGGGGGCACAC
CCGCCCCCCTCTCGCTGGCTGGACGTCTGTGCAGGGCCGGGGGGGTTCAC
GGAGTACATATGCTGGAAGCTCGATCGGCGCCGCAGGCAGGCTGGCAGTG
CCGCTGCCGTCAGCGCGGGGGCTACAGACGCCACTGCGGCTTCGCTCGCC
TACGCACAGGAGGGTAGTGGAGGGGGAGGGGGGGGCGGCGCCAGCAGCAC
CAGAGCTGGTGGTTATGGCGCGGAGGCGGGCCAGGGCCAGGCGCTGGTGG
CGTCGCAGTCTGCAGGCGCTGTTGCAGCAGCACGTGAAGATGCGGCGATG
GCGGCGGCGCGCAGTGCTCCGCTGGGGTTTGGCTGGGGCATGACCCTCAG
CGCGCACGCAGACGCATCCGTGGCACAGGAGCGCAGTGACTGGCAGCTGC
AGCACCTGCGAGCCCTGAACGCTGCCGTCTGCCACGGCGGCGACCACGAG
GGGCCCGCCCGCACCATGCCGCCGCGGCCAGCGCTGCCGCCGCCGCCGCC
CAGAGCAGCTGCCGCCGCTGCACAAGCCGCCGCTGCCGAGGCGACACACG
CAGTCGTGGCGGCAGGACAGGCGGAAGTCAGCGGCGCGCCAGAAGCTGTG
CAGGAGGCGGCGGAGGCGGCGGAGTGCGCGATAGCCGCGGCGGCGACGGC
AATGGCCGCGGCGGCGCCCGCCGTGGAGGACGTGGCAACGCACTTCAGGA
CGACGTACGCACGCGACGGAACGGGGGACGTGACCCGCGAAGCCAACCTG
GCCTATTTCGCGCAGCTGGTCGACGAGGAGAGCGGCGGCGGCGGTGTGGA
TCTGGCGATGGCGGATGGTGGCACTGCGGCGGCGCGCCACGCGCCCAGCC
AGGAGCACGCGCTGTCGCTGCTGGTGGTCTGCGAGGCGCGCGCGGCACTG
GCGGCGCTGCGCAGGGGCGGCTCCTTCGTCATCAAGCTGTTTGGCACGGA
GGGTGCGCTCACAGCGGGCCTGGTGCTGGCTCTGTCTGCGGCCTTCATGC
GCGTCGCCGTGGTCAAGCCTCTGACGTCGCGGCCTGCCAGTGCTGAGCGC
TTCCTCGTGTGCAGAGGGCTGCTCCTCGGCCGCGATGCGCTGGTGCCGCT
GCTCAGGCGCCTCGAGACCGTCGCTGAGCAGCTGAGAGAGCGTCACGGCG
CAGCGGTCGCGGCGGCAGCAGCAGCGGCGGATGCTGGTGCGACGATTCCT
GCGGGGCGCGAACCAGAGCTGTGCATCGTGCGAGCGAGCATGTTGACAGC
TACTGGCGGCGGTGGCAGCGGTGACGGCACCAGCGGCACTCATGCTGCCG
CGAGCAGCGGCGGAGGCGGCAGCAGCGGCAGTGGGGGGACGAGCGAGGTG
GCTATGCTGCCGTACCTGCGGCGTGTGAATGATGCGCTCATGCGGCTGCA
GCTGGCAGCTTGCTCAGCGATAGCTGCGGAGGCCGCGGACGGCAACCTGC
ACTTTCCGGAGGGTCCGGGCAAGTGGCAGCGGCGCCGCACACGTGAGCAG
CGGCTGCTGTCAGCCTGCGAGCGAACGTGGGGGATCGTGTAG
back to top