mRNA_6200 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|70196
Unique NamemRNA_6200
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|70196 vs. uniprot
Match: A0A836CCJ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCJ8_9STRA)

HSP 1 Score: 271 bits (693), Expect = 4.740e-88
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 3 
Query:   30 MCQKLITSRGQRAASAATATVKTSTATMARAHYNHCQPRKEPAAHAMASGSRKRALCVSVEDALGGFFASIASQAPSSQTPAARKRQRTATTAHAAXXXXXXXSTAAFRSTALGHSVLEQASDSFALMVLALEAXXXXXXXXXXXXXXXXXXXXXXXXEVAAAATTVYQPYHLAAATGAPMFVPCSA 590
            MCQKLITSRGQRAASAATATVKTSTATMARAHYNHCQPRKEPAAHAMASGSRKRALCVSVEDALGGFFASIASQAPSSQTPAARKRQRTATTAHAAXXXXXXXSTAAFRSTALGHSVLEQASDSFALMVLALEAXXXXXXXXXXXXXXXXXXXXXXXXEVAAAATTVYQPYHLAAATGAPMFVPCSA
Sbjct:    1 MCQKLITSRGQRAASAATATVKTSTATMARAHYNHCQPRKEPAAHAMASGSRKRALCVSVEDALGGFFASIASQAPSSQTPAARKRQRTATTAHAAXXXXXXXSTAAFRSTALGHSVLEQASDSFALMVLALEAXXXXXXXXXXXXXXXXXXXXXXXXEVAAAATTVYQPYHLAAATGAPMFVPCSA 187
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|70196 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CCJ8_9STRA4.740e-88100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_47contigContig_47:188784..189799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|70196|CE70195_40
Hectar predicted targeting categorymitochondrion
TranscriptId70518
TrackFilteredModels1
ProteinId70196
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|70196gene_6200Tribonema minus UTEX_B_3156 geneContig_47 188784..189799 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6200_1exon_6200_1Tribonema minus UTEX_B_3156 exonContig_47 188784..189799 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_6200UTR5_6200Tribonema minus UTEX_B_3156 five_prime_UTRContig_47 188784..188812 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6200CDS_6200Tribonema minus UTEX_B_3156 CDSContig_47 188813..189376 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6200UTR3_6200Tribonema minus UTEX_B_3156 three_prime_UTRContig_47 189377..189799 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|70196Trimin1|70196|CE70195_40Tribonema minus UTEX_B_3156 polypeptideContig_47 188813..189376 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6200 ID=mRNA_6200|Name=jgi.p|Trimin1|70196|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1016bp|location=Sequence derived from alignment at Contig_47:188784..189799+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGCGCACACGCAGTGCCATCAGACACTCATGTGCCAGAAGCTGATCACT
AGCAGAGGGCAACGCGCAGCCTCTGCTGCAACTGCTACGGTCAAGACATC
AACTGCTACCATGGCACGCGCACACTACAATCATTGCCAGCCGCGCAAGG
AGCCCGCAGCGCATGCCATGGCCAGCGGCAGCCGCAAAAGGGCTCTCTGT
GTGTCCGTCGAGGATGCGCTAGGAGGCTTCTTCGCCAGCATCGCTAGCCA
GGCGCCATCTTCGCAAACACCGGCAGCACGTAAGCGGCAGAGGACAGCAA
CTACGGCACACGCCGCCACAACAGCGGGAGCGGGCGCGTCCACCGCTGCA
TTCCGCTCCACTGCCCTTGGCCACAGCGTGCTGGAGCAGGCGTCCGACAG
CTTCGCTCTCATGGTGCTGGCGCTGGAGGCAGAAAAGGCATCAGCATCAT
CGGAGAGGCGCACTCATCAACAACAACAGACACGGGCGGAGGCAGAGGCG
AAGGAGGTGGCAGCAGCAGCAACCACCGTATACCAACCCTATCACCTCGC
AGCAGCGACAGGCGCTCCCATGTTTGTGCCCTGCTCAGCCTGAGCATTCT
AGCATGAAGCATCAACCAATTTTAGGTGCTGCAACAGCAGCATTTCGTCA
ACACGACAGTTCAGTGCCTTTACTGACGCATGCTACACTGTGGAAGTCGA
CATCAGGCCTAGACGCGGCGGCGTTAGCTGAAAGTTAGGACTTGTGTATG
TGTTGGGAGTGGAGAGAGGTGGTTCGGTGATTTGGTTGTACAGAGCATCT
GCATTTGCCGCACCATAGACAGCAGTTCTGTCGACAAATAGCGCAGCCAC
CGCGGTTAGAGCTTTCCTTCGCGGGTCAAAGTCACAGTAGCAGAGGTATC
ACATACAGCACTGGATTTTTGAGACGACGAGTGCTTTTGATATCATCACA
TGCCCTCGCAGGGGCAACAGGTTTTGCACCACAAGACGGGTGCGGGGGGA
GGGAAAGTGGTTAGTT
back to top

protein sequence of jgi.p|Trimin1|70196

>Trimin1|70196|CE70195_40 ID=Trimin1|70196|CE70195_40|Name=jgi.p|Trimin1|70196|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=188bp
MCQKLITSRGQRAASAATATVKTSTATMARAHYNHCQPRKEPAAHAMASG
SRKRALCVSVEDALGGFFASIASQAPSSQTPAARKRQRTATTAHAATTAG
AGASTAAFRSTALGHSVLEQASDSFALMVLALEAEKASASSERRTHQQQQ
TRAEAEAKEVAAAATTVYQPYHLAAATGAPMFVPCSA*
back to top

mRNA from alignment at Contig_47:188784..189799+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6200 ID=mRNA_6200|Name=jgi.p|Trimin1|70196|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1016bp|location=Sequence derived from alignment at Contig_47:188784..189799+ (Tribonema minus UTEX_B_3156 )
GTGCGCACACGCAGTGCCATCAGACACTCATGTGCCAGAAGCTGATCACT
AGCAGAGGGCAACGCGCAGCCTCTGCTGCAACTGCTACGGTCAAGACATC
AACTGCTACCATGGCACGCGCACACTACAATCATTGCCAGCCGCGCAAGG
AGCCCGCAGCGCATGCCATGGCCAGCGGCAGCCGCAAAAGGGCTCTCTGT
GTGTCCGTCGAGGATGCGCTAGGAGGCTTCTTCGCCAGCATCGCTAGCCA
GGCGCCATCTTCGCAAACACCGGCAGCACGTAAGCGGCAGAGGACAGCAA
CTACGGCACACGCCGCCACAACAGCGGGAGCGGGCGCGTCCACCGCTGCA
TTCCGCTCCACTGCCCTTGGCCACAGCGTGCTGGAGCAGGCGTCCGACAG
CTTCGCTCTCATGGTGCTGGCGCTGGAGGCAGAAAAGGCATCAGCATCAT
CGGAGAGGCGCACTCATCAACAACAACAGACACGGGCGGAGGCAGAGGCG
AAGGAGGTGGCAGCAGCAGCAACCACCGTATACCAACCCTATCACCTCGC
AGCAGCGACAGGCGCTCCCATGTTTGTGCCCTGCTCAGCCTGAGCATTCT
AGCATGAAGCATCAACCAATTTTAGGTGCTGCAACAGCAGCATTTCGTCA
ACACGACAGTTCAGTGCCTTTACTGACGCATGCTACACTGTGGAAGTCGA
CATCAGGCCTAGACGCGGCGGCGTTAGCTGAAAGTTAGGACTTGTGTATG
TGTTGGGAGTGGAGAGAGGTGGTTCGGTGATTTGGTTGTACAGAGCATCT
GCATTTGCCGCACCATAGACAGCAGTTCTGTCGACAAATAGCGCAGCCAC
CGCGGTTAGAGCTTTCCTTCGCGGGTCAAAGTCACAGTAGCAGAGGTATC
ACATACAGCACTGGATTTTTGAGACGACGAGTGCTTTTGATATCATCACA
TGCCCTCGCAGGGGCAACAGGTTTTGCACCACAAGACGGGTGCGGGGGGA
GGGAAAGTGGTTAGTT
back to top

Coding sequence (CDS) from alignment at Contig_47:188784..189799+

>mRNA_6200 ID=mRNA_6200|Name=jgi.p|Trimin1|70196|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=564bp|location=Sequence derived from alignment at Contig_47:188784..189799+ (Tribonema minus UTEX_B_3156 )
ATGTGCCAGAAGCTGATCACTAGCAGAGGGCAACGCGCAGCCTCTGCTGC
AACTGCTACGGTCAAGACATCAACTGCTACCATGGCACGCGCACACTACA
ATCATTGCCAGCCGCGCAAGGAGCCCGCAGCGCATGCCATGGCCAGCGGC
AGCCGCAAAAGGGCTCTCTGTGTGTCCGTCGAGGATGCGCTAGGAGGCTT
CTTCGCCAGCATCGCTAGCCAGGCGCCATCTTCGCAAACACCGGCAGCAC
GTAAGCGGCAGAGGACAGCAACTACGGCACACGCCGCCACAACAGCGGGA
GCGGGCGCGTCCACCGCTGCATTCCGCTCCACTGCCCTTGGCCACAGCGT
GCTGGAGCAGGCGTCCGACAGCTTCGCTCTCATGGTGCTGGCGCTGGAGG
CAGAAAAGGCATCAGCATCATCGGAGAGGCGCACTCATCAACAACAACAG
ACACGGGCGGAGGCAGAGGCGAAGGAGGTGGCAGCAGCAGCAACCACCGT
ATACCAACCCTATCACCTCGCAGCAGCGACAGGCGCTCCCATGTTTGTGC
CCTGCTCAGCCTGA
back to top