mRNA_6075 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349537
Unique NamemRNA_6075
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|349537 vs. uniprot
Match: A0A835YS48_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS48_9STRA)

HSP 1 Score: 389 bits (999), Expect = 1.040e-135
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 1 
Query:    1 MAQVQRQRRARTEAAGVGGEAENGWTHEPGSWRKLGAFSIAKLLISLGLDLAYSRGRLPLGGWGRALALWQLYRERLPVLLSAVCPTWVPLLSIVWLFKVRARTFEEDRGEPRGSYLGHLLPIKTMVLSGPPFAPDAGGATGPMGGTSRGGAEERRAQARPGEILGFDVSNIADGEVVELSSMAGTAGTAQRRHR 585
            MAQVQRQRRARTEAAGVGGEAENGWTHEPGSWRKLGAFSIAKLLISLGLDLAYSRGRLPLGGWGRALALWQLYRERLPVLLSAVCPTWVPLLSIVWLFKVRARTFEEDRGEPRGSYLGHLLPIKTMVLSGPPFAPDAGGATGPMGGTSRGGAEERRAQARPGEILGFDVSNIADGEVVELSSMAGTAGTAQRRHR
Sbjct:    1 MAQVQRQRRARTEAAGVGGEAENGWTHEPGSWRKLGAFSIAKLLISLGLDLAYSRGRLPLGGWGRALALWQLYRERLPVLLSAVCPTWVPLLSIVWLFKVRARTFEEDRGEPRGSYLGHLLPIKTMVLSGPPFAPDAGGATGPMGGTSRGGAEERRAQARPGEILGFDVSNIADGEVVELSSMAGTAGTAQRRHR 195
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349537 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YS48_9STRA1.040e-135100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_45contigContig_45:317087..318456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349537|estExt_Genemark1.C_Ctg_450044
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_001970.1
TranscriptId349859
TrackFilteredModels1
ProteinId349537
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349537gene_6075Tribonema minus UTEX_B_3156 geneContig_45 317087..318456 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6075_1exon_6075_1Tribonema minus UTEX_B_3156 exonContig_45 317087..317373 +
exon_6075_2exon_6075_2Tribonema minus UTEX_B_3156 exonContig_45 317964..318456 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6075CDS_6075Tribonema minus UTEX_B_3156 CDSContig_45 317087..317373 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6075UTR3_6075Tribonema minus UTEX_B_3156 three_prime_UTRContig_45 318265..318456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349537Trimin1|349537|estExt_Genemark1.C_Ctg_450044Tribonema minus UTEX_B_3156 polypeptideContig_45 317087..318264 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6075 ID=mRNA_6075|Name=jgi.p|Trimin1|349537|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=780bp|location=Sequence derived from alignment at Contig_45:317087..318456+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCAGGTTCAGCGGCAGCGGCGAGCGCGTACTGAGGCCGCGGGCGT
AGGCGGCGAGGCAGAAAATGGCTGGACTCACGAGCCAGGCTCATGGCGGA
AACTTGGCGCGTTCAGCATCGCGAAGCTGTTGATATCGCTGGGGTTGGAC
CTGGCTTACAGCAGAGGGCGCTTGCCCTTGGGAGGCTGGGGCCGCGCCTT
GGCGCTGTGGCAACTCTACAGGGAACGTCTGCCTGTGCTGCTGAGTGCAG
TATGCCCGACCTGGGTGCCGCTTCTCAGCATCGTGTGGCTGTTCAAAGTG
CGCGCGCGCACCTTCGAAGAGGACAGAGGCGAGCCACGCGGCAGCTACCT
GGGGCACCTGCTGCCCATCAAAACGATGGTCCTTTCGGGCCCCCCATTTG
CCCCCGACGCTGGCGGCGCCACTGGGCCAATGGGGGGCACCAGCCGTGGG
GGGGCGGAAGAGCGACGCGCGCAGGCTCGGCCAGGCGAAATTTTGGGCTT
TGACGTTTCAAACATAGCGGATGGTGAAGTTGTTGAGCTGTCGTCCATGG
CGGGGACAGCGGGGACGGCGCAGCGGCGGCATCGGTAGCCGCGGCGGCGG
CGGCGCAGACTGCCCTCGGGGCGGCAGACGTGTACAGGAGAGCCAATGTC
AGGGGGTAGGGGGCGCACGGCAGCGCGGCAATGTGTATATAGGCAGAGAA
GACGTGGATATGGGGGTGATACCCCGCTGGCACATACTGCCACACGTGGC
AGTACACAAATTCAGGAGAATTGATTGGGC
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protein sequence of jgi.p|Trimin1|349537

>Trimin1|349537|estExt_Genemark1.C_Ctg_450044 ID=Trimin1|349537|estExt_Genemark1.C_Ctg_450044|Name=jgi.p|Trimin1|349537|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=196bp
MAQVQRQRRARTEAAGVGGEAENGWTHEPGSWRKLGAFSIAKLLISLGLD
LAYSRGRLPLGGWGRALALWQLYRERLPVLLSAVCPTWVPLLSIVWLFKV
RARTFEEDRGEPRGSYLGHLLPIKTMVLSGPPFAPDAGGATGPMGGTSRG
GAEERRAQARPGEILGFDVSNIADGEVVELSSMAGTAGTAQRRHR*
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mRNA from alignment at Contig_45:317087..318456+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6075 ID=mRNA_6075|Name=jgi.p|Trimin1|349537|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1370bp|location=Sequence derived from alignment at Contig_45:317087..318456+ (Tribonema minus UTEX_B_3156 )
ATGGCCCAGGTTCAGCGGCAGCGGCGAGCGCGTACTGAGGCCGCGGGCGT
AGGCGGCGAGGCAGAAAATGGCTGGACTCACGAGCCAGGCTCATGGCGGA
AACTTGGCGCGTTCAGCATCGCGAAGCTGTTGATATCGCTGGGGTTGGAC
CTGGCTTACAGCAGAGGGCGCTTGCCCTTGGGAGGCTGGGGCCGCGCCTT
GGCGCTGTGGCAACTCTACAGGGAACGTCTGCCTGTGCTGCTGAGTGCAG
TATGCCCGACCTGGGTGCCGCTTCTCAGCATCGTGTGGTAAGTTGCGTGC
ATGACTACAGTGTTTCTGGGCGCCGTACTGGCAGTACCACTGCTCAGTCC
ATAGACACCCATGCGCCCCCTCTGTTGCGCGAGGCCTCATTCATCACCTC
GCTTTGTTTCAGAAGGCAATGACGCACCTGATCTCAGGTACTGTCGACCT
GAGCCCATGGGGGTGGCAGGTGGGGCCACGGGCACATTGCACGTGCCGTC
ATCGCTGCTGTTGATACCATTCATCAGCTGTCGCTCTCTGCCAAGGGATG
GCTGCTGCTGCGTCAATGCAGCTGCCTGCTCACTCTTGTGCAACCGCAGG
CTTCGACGGCAAGCTTGGCTTGGCACACGTGCATTCAAGCAATGCAGCCT
CGCCATGTTGAATGAGGATGTGCCACTAGGCAAAAGTGCAGCGGCTGCGC
AAACGCGACAGTCTGCACACAGTGGTTAAGCTGTTTTGATAGTTCGCCTG
TGCACAGTCGGTTCTGGTGCTGAAACCTTGGTGGCAGCAGCGAAACTGCC
ACAATGCTACCCAAGCAAGAACTCGCGCCGCGCCCTTGTTCCCGCATGAT
GCAACATGCGATCGTGTCACTGCGCAGGCTGTTCAAAGTGCGCGCGCGCA
CCTTCGAAGAGGACAGAGGCGAGCCACGCGGCAGCTACCTGGGGCACCTG
CTGCCCATCAAAACGATGGTCCTTTCGGGCCCCCCATTTGCCCCCGACGC
TGGCGGCGCCACTGGGCCAATGGGGGGCACCAGCCGTGGGGGGGCGGAAG
AGCGACGCGCGCAGGCTCGGCCAGGCGAAATTTTGGGCTTTGACGTTTCA
AACATAGCGGATGGTGAAGTTGTTGAGCTGTCGTCCATGGCGGGGACAGC
GGGGACGGCGCAGCGGCGGCATCGGTAGCCGCGGCGGCGGCGGCGCAGAC
TGCCCTCGGGGCGGCAGACGTGTACAGGAGAGCCAATGTCAGGGGGTAGG
GGGCGCACGGCAGCGCGGCAATGTGTATATAGGCAGAGAAGACGTGGATA
TGGGGGTGATACCCCGCTGGCACATACTGCCACACGTGGCAGTACACAAA
TTCAGGAGAATTGATTGGGC
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Coding sequence (CDS) from alignment at Contig_45:317087..318456+

>mRNA_6075 ID=mRNA_6075|Name=jgi.p|Trimin1|349537|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=588bp|location=Sequence derived from alignment at Contig_45:317087..318456+ (Tribonema minus UTEX_B_3156 )
ATGGCCCAGGTTCAGCGGCAGCGGCGAGCGCGTACTGAGGCCGCGGGCGT
AGGCGGCGAGGCAGAAAATGGCTGGACTCACGAGCCAGGCTCATGGCGGA
AACTTGGCGCGTTCAGCATCGCGAAGCTGTTGATATCGCTGGGGTTGGAC
CTGGCTTACAGCAGAGGGCGCTTGCCCTTGGGAGGCTGGGGCCGCGCCTT
GGCGCTGTGGCAACTCTACAGGGAACGTCTGCCTGTGCTGCTGAGTGCAG
TATGCCCGACCTGGGTGCCGCTTCTCAGCATCGTGTGGCTGTTCAAAGTG
CGCGCGCGCACCTTCGAAGAGGACAGAGGCGAGCCACGCGGCAGCTACCT
GGGGCACCTGCTGCCCATCAAAACGATGGTCCTTTCGGGCCCCCCATTTG
CCCCCGACGCTGGCGGCGCCACTGGGCCAATGGGGGGCACCAGCCGTGGG
GGGGCGGAAGAGCGACGCGCGCAGGCTCGGCCAGGCGAAATTTTGGGCTT
TGACGTTTCAAACATAGCGGATGGTGAAGTTGTTGAGCTGTCGTCCATGG
CGGGGACAGCGGGGACGGCGCAGCGGCGGCATCGGTAG
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