mRNA_6045 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349517
Unique NamemRNA_6045
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|349517 vs. uniprot
Match: A0A835YRT3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRT3_9STRA)

HSP 1 Score: 668 bits (1723), Expect = 5.340e-242
Identity = 339/339 (100.00%), Postives = 339/339 (100.00%), Query Frame = 1
Query:    1 MVAREEGSGGMGSRPARSELFAGSAVSELEGVAVEEEQELMSALADDLLLQPEATAVAAVAIPAAPGTSKRNWWGLMKQRMWTKMDFLHLHAISGVAFSGVGTLWIMKYLYDAAQGAPMQAAPDALSLGLLTVGAINCFSCLPMTSNPNQAGGFKFLGVGMTLNSIWQAWWVSGTYPAGLASVDPWLAGAFLIAIVSGIVDSEVALSRELGIMQSRRVQPTDVEVNETVINHRAASYPNLLHIPVLYNILAGGQPWLARVSERWPAEPMMLYHACFAIAVANSIVFLCATLKDRKLMTLRAWLYVQLIVLAPLVTTAIDLHAAPGQLSIDPTQVYAGFI 1017
            MVAREEGSGGMGSRPARSELFAGSAVSELEGVAVEEEQELMSALADDLLLQPEATAVAAVAIPAAPGTSKRNWWGLMKQRMWTKMDFLHLHAISGVAFSGVGTLWIMKYLYDAAQGAPMQAAPDALSLGLLTVGAINCFSCLPMTSNPNQAGGFKFLGVGMTLNSIWQAWWVSGTYPAGLASVDPWLAGAFLIAIVSGIVDSEVALSRELGIMQSRRVQPTDVEVNETVINHRAASYPNLLHIPVLYNILAGGQPWLARVSERWPAEPMMLYHACFAIAVANSIVFLCATLKDRKLMTLRAWLYVQLIVLAPLVTTAIDLHAAPGQLSIDPTQVYAGFI
Sbjct:    1 MVAREEGSGGMGSRPARSELFAGSAVSELEGVAVEEEQELMSALADDLLLQPEATAVAAVAIPAAPGTSKRNWWGLMKQRMWTKMDFLHLHAISGVAFSGVGTLWIMKYLYDAAQGAPMQAAPDALSLGLLTVGAINCFSCLPMTSNPNQAGGFKFLGVGMTLNSIWQAWWVSGTYPAGLASVDPWLAGAFLIAIVSGIVDSEVALSRELGIMQSRRVQPTDVEVNETVINHRAASYPNLLHIPVLYNILAGGQPWLARVSERWPAEPMMLYHACFAIAVANSIVFLCATLKDRKLMTLRAWLYVQLIVLAPLVTTAIDLHAAPGQLSIDPTQVYAGFI 339          
BLAST of jgi.p|Trimin1|349517 vs. uniprot
Match: W7TUZ9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUZ9_9STRA)

HSP 1 Score: 250 bits (638), Expect = 7.250e-76
Identity = 144/319 (45.14%), Postives = 196/319 (61.44%), Query Frame = 1
Query:  139 DLLLQPEATAVAAVAIPAAPGTSKRNWWGLMKQRMWTKMDFLHLHAISGVAFSGVGTLWIMKYLYDAAQGAPMQAAPDA-----LSLGLLTVGAINCFSCLPMT---SNPN-----QAGGFKFLGVGMTLNSIWQAWWVSGTYPAGLASVDPWLAGAFLIAIVSGIVDSEVALSREL----------GIMQSRRVQP--------TDVEVN-ETVINHRAASYPNLLHIPVLYNILAGGQPWLARVSERWPAEPMMLYHACFAIAVANSIVFLCATLKDRKLMTLRAWLYVQLIVLAPLVTTAIDLHAAPGQLSIDPTQ 999
            DL L   A   A+V  PA    +    + L K+R+WTK D+LH HA+SG AF  +G L+++ ++ D   G    A  +      + L ++  G +NC SCLPM+   + P      +  GFK LG+GMT+  IW A++ SG YP+ +A VDP LA  FL  IV GIV+SEVAL++EL          G+  S    P        T+ E   E V+NHR ASYPNLLH+PVLYN++ GGQPWL +V  ++P EP +L+HA F IAVANSIVFL ATLKDRKLMTLR WL +Q++V+ P VTT +D+ +   ++SI+P +
Sbjct:   91 DLELNDTAVLTASVGSPATE--TANAMFQLWKRRLWTKADYLHSHAVSGAAFMVLGALYVLFFVGDQVFGGSALAQAERGVVGWVPLAIMWTGVVNCISCLPMSKFRAGPQGGYDTKGAGFKGLGIGMTMLGIWTAYFFSGHYPSWMAPVDPLLALGFLAVIVHGIVNSEVALAKELEEKAPAMSPEGVWSSTPSSPASSPDASLTERETRTEIVLNHRVASYPNLLHLPVLYNVILGGQPWLQQVVAKFPLEPTLLFHASFGIAVANSIVFLGATLKDRKLMTLRQWLLLQVVVMTPFVTTVVDVWSLGREVSINPLE 407          
BLAST of jgi.p|Trimin1|349517 vs. uniprot
Match: A0A0G4EV39_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EV39_VITBC)

HSP 1 Score: 244 bits (622), Expect = 7.200e-74
Identity = 130/288 (45.14%), Postives = 184/288 (63.89%), Query Frame = 1
Query:  211 RNWWGLMKQRMWTKMDFLHLHAISGVAFSGVGTLWIMKYLYDAAQGAPMQAAP---------DALSLGLLTVGAINCFSCLPMTSN--PNQAGGFKFLGVGMTLNSIWQAWWVSGTYPAGLASVDPWLAGAFLIAIVSGIVDSEVALSRELGIMQSR------RVQPTDVEVN-ETVINHRAASYPNLLHIPVLYNILAGGQPWLARVSERWPAEPMMLYHACFAIAVANSIVFLCATLKDRKLMTLRAWLYVQLIVLAPLVTTAID-LHAAPGQLSIDPTQVYAGFI 1017
            R++W  +K+R+WT+MD+LH+HAISGVA+ G+G LW +  +   + G      P         DALS+ LL VG +NC SC PM+ +  P ++ GF+ LGVGMTL  +W+A WVSG YP  L      +   FL  I+ GI  +E AL  +L ++ ++      R      E   E+++ HR ASYPNLLH P+L+N+L GG+ WL RV + +PAE ++LYHA F +A+AN+IVFL ATL+ RKLMT R W+ +QL+VLAP  +T +D L   P  +S++P  +YAGFI
Sbjct:  131 RSFWAEVKRRLWTRMDWLHIHAISGVAYIGLGGLWFLWEMVGPSLGLQQLVPPPSPYDLWQADALSVALLLVGVLNCVSCAPMSKHMSPAKSEGFEGLGVGMTLLGVWEALWVSGFYPPSLEWATDGIGAVFLFMILRGIYTAERALESDLAMISAKYALGRIRTPGAFAEARLESMVIHRIASYPNLLHTPILWNMLVGGREWLDRVLDTFPAESILLYHAAFGMALANAIVFLGATLQHRKLMTSRQWIALQLVVLAPFWSTVVDCLVYGPETVSVNPLDMYAGFI 418          
BLAST of jgi.p|Trimin1|349517 vs. uniprot
Match: A0A0G4FM63_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FM63_VITBC)

HSP 1 Score: 238 bits (607), Expect = 1.690e-71
Identity = 133/289 (46.02%), Postives = 176/289 (60.90%), Query Frame = 1
Query:  217 WWGLMKQRMWTKMDFLHLHAISGVAFSGVGTLWIMKYLYDAAQGA------PMQAAP---DALSLGLLTVGAINCFSCLPMTSNPN----QAGGFKFLGVGMTLNSIWQAWWVSGTYPAGLASVDPWLAGAFLIAIVSGIVDSEVALSRELGIMQSRRVQPT---------DVEVNETVINHRAASYPNLLHIPVLYNILAGGQPWLARVSERWPAEPMMLYHACFAIAVANSIVFLCATLKDRKLMTLRAWLYVQLIVLAPLVTTAIDLHAAPGQLSIDPTQVYAGFI 1017
            +W   ++RMWT MD+LHLHA+SGV F G+GTLW    L     G       P    P   D+ S+ LL V  +NCF+C+PM+   N    +  GFK LG GMTL + W+A WVSG YP  L +  P +A AFL  IV GI  SE AL   +  + ++  + +         D   N+ V+NHR ASYPNLLH+P+L+NI  GG+ WL  V + +P E  +LY A F +A+ANSIVFL ATLKDR+LMTLR WL +QL+VLAP V+T +D       +S+ P +VYAG +
Sbjct:  141 YWRECRKRMWTSMDWLHLHAVSGVLFMGLGTLWFGWELARPVLGVEGAFEMPSPLLPWRADSASMTLLMVAILNCFTCIPMSKFRNGHDTKGDGFKGLGTGMTLLAAWEALWVSGYYPPVLEAATPAIATAFLATIVHGIWTSEKALEGAVHRLDAKWARGSSNRETSLSYDEMRNDIVLNHRVASYPNLLHLPILWNIGIGGRGWLDTVLQSFPGESALLYDAAFGMALANSIVFLGATLKDRRLMTLREWLALQLVVLAPFVSTVVDCCVYGDSISVKPWEVYAGLV 429          
BLAST of jgi.p|Trimin1|349517 vs. uniprot
Match: D7FNF1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNF1_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 1.450e-36
Identity = 98/292 (33.56%), Postives = 151/292 (51.71%), Query Frame = 1
Query:  190 AAPGT----SKRNWWGLMKQRMWTKMDFLHLHAISGVAFSGVGTLWIMKYL-YDAAQGAPMQAAPDALSLGLLTVGAINCFSCLPMTSNPNQAGGFKFLGVGMTLNSIWQAWWVSGTYPAGLASVDPWLAGAFLIAIVSGIVDSE---VALSRELGIMQSRRVQPT-------DVEVNETVINHRAASYPNLL-HIPVLYNILAGGQPWLARVSERWPAEPMMLYHACFAIAVANSIVFLCATLKDRKLMTLRAWLYVQLIVLAPLVTTAIDLHAAPGQLSIDPTQVYAGFI 1017
            A PGT        W  ++++RM TK D++HLHA SG  +   G+L+++  +  +   G P      AL L +L  GA+N FS +PM +  +    +   G+ ++   +W AW+VSG YPA LA  DPWLA A L  +V   V++E   +A  R+  I+  +  + T       D  V    +N RA SY +L+ + P LY  L G   W+ R+ E +P  P +L+HA  A+A + SI FL  TL  R+L+  +    +Q +  AP V + ID        + +P  +Y GF+
Sbjct:  161 ALPGTWLTAGLPKWMHILRRRMITKEDWMHLHASSGALYIAGGSLYLLGVIGMELFTGTPQLDTTSALPLCVLGFGALNTFSSIPMANTRS----WVLSGLCLSTMQLWNAWYVSGAYPASLAPADPWLAAANLSLLVIACVEAEEQILAEKRQREILAQKGRRRTGKIHIRGDDHVEGDAMN-RAGSYGSLIFNAPHLYATLVGSG-WVERLGEAFPDSPALLFHAYVALATSTSIAFLAPTLYQRRLIDAKMMSSMQFLTFAPAVMSLIDASVMGAAATNNPIDIYLGFL 446          
BLAST of jgi.p|Trimin1|349517 vs. uniprot
Match: R1DEB8_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DEB8_EMIHU)

HSP 1 Score: 140 bits (352), Expect = 4.280e-34
Identity = 84/275 (30.55%), Postives = 140/275 (50.91%), Query Frame = 1
Query:  223 GLMKQRMWTKMDFLHLHAISGVAFSGVGTLWIM-KYLYDAAQGAPMQAAPDALSLGLLTVGAINCFSCLPMTS-NPNQ--------AGGFKFLGVGMTLNSIWQAWWVSGTYPAGLASVDPWLAGAFLIAIVSGIVDSEVALSRELGIMQSRRVQPTDVEVNETVINHRAASYPNLLHIPVLYNILAGGQPWLARVSERWPAEPMMLYHACFAIAVANSIVFLCATLKDRKLMTLRAWLYVQLIVLA-PLVTTAIDLHAAPGQLSIDPTQVYAGF 1014
            G +++R+WT+ DF+H+HA+SG  F  +G  W++  ++ +A   +   A        LL  G +N  S +PM+  N N+        A GF F G G+T   ++ AWW SG YP  L   D  +   + +       + EV L +     + RRV+  + E+ +  I +R AS+PNL  +  +Y+I  GG  WL + + +WP +   +YH   A A+  ++     TL+DRKL+TL   L V ++    P+V+  +D       ++I P + +A F
Sbjct:  154 GTVRRRLWTRADFMHIHAVSGAYFLFLGIPWLVYSHVTNALDTSVPMATSGPFLTSLLVAGLVNALSAVPMSKFNSNKMLDMRDLKANGFTFGGTGLTTMCLYIAWWFSGDYPDFLRPFDIPIFLFWALVCAGTTANWEVMLQQNFQANERRRVKVPEKEMRQKAILYRLASWPNLTQLSFMYSIPFGGAAWLQQCTAQWPMQSTPMYHYGIASAMGYALSMFSETLRDRKLVTLEQDLLVLIVGFTFPMVSVLLDGLTYGSAVTISPPEYWALF 428          
BLAST of jgi.p|Trimin1|349517 vs. uniprot
Match: A0A7S0JE95_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JE95_9EUKA)

HSP 1 Score: 126 bits (317), Expect = 3.000e-29
Identity = 84/279 (30.11%), Postives = 143/279 (51.25%), Query Frame = 1
Query:  223 GLMKQRMWTKMDFLHLHAISGVAFSGVGTLWIM-KYLYDAAQ-GAPMQAAPDALSLGLLTVGAINCFSCLPMTSNPN---------QAGGFKFLGVGMTLNSIWQAWWVSGTYPAGLASVDPWLAGAFLIAIVSGIVDSEVALSR--ELGIMQSRR-VQPTDVEVNETVINHRAASYPNLLHIPVLYNILAGGQPWLARVSERWPAEPMMLYHACFAIAVANSIVFLCATLKDRKLMTLRAWLYVQLIVLA-PLVTTAIDLHAAPGQLSIDPTQVYAGF 1014
            G +++R+WT+ DF+H+HA++G  F  +G  W++  ++ +A     PM+ +   L+  LL  G +N  S +PM+   +         +A GF F G G+T   ++ AWW SG YPA L S D  +   + +  V    + E+ L +  E      R+  + +  E+ +  I +R AS+PNL  +  +Y+I  GG  WL +    WP +   +YH   A A+  ++     TL+DRKL+TL   L + +I    P+V+  +D       ++I P + +A F
Sbjct:  137 GTVRRRLWTRADFMHIHAVTGGYFLFLGIPWLLYSHVANAFDTSVPMETSSWFLT-SLLLAGMVNALSAIPMSRFSSNKLFDLKDLKANGFTFGGTGLTCMCLYIAWWFSGNYPAFLHSFDIPIFFFWALVCVGTTANWEIMLQQNFEANERAGRKFAKVSKKEMQQKAILYRLASWPNLTQLTFMYSIPFGGLTWLQQCEAIWPMQSTPMYHYGIASAMGYALSMFSETLRDRKLVTLEQDLLILIIGFCFPMVSVILDGLTYGSAVTISPPEYWALF 414          
BLAST of jgi.p|Trimin1|349517 vs. uniprot
Match: K0SQJ5_THAOC (PPPDE domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SQJ5_THAOC)

HSP 1 Score: 128 bits (321), Expect = 6.070e-29
Identity = 79/280 (28.21%), Postives = 137/280 (48.93%), Query Frame = 1
Query:  223 GLMKQRMWTKMDFLHLHAISGVAFSGVGTLWIM-KYLYDAAQGAPMQAAPDALSLGLLTVGAINCFSCLPMTSNPN---------QAGGFKFLGVGMTLNSIWQAWWVSGTYPAGLASVDPWLAGAFLIAIVSGIVDSEVALSR--ELGIMQSRRVQ---PTDVEVNETVINHRAASYPNLLHIPVLYNILAGGQPWLARVSERWPAEPMMLYHACFAIAVANSIVFLCATLKDRKLMTLRAWLYVQLI-VLAPLVTTAIDLHAAPGQLSIDPTQVYAGF 1014
            G +++R+WTK DF+H+HAI+G  F  +G  W++  ++        M          LL  G  N  S +PM+   +         +A GF   G G+T  S+W AWW SG+YP  L  ++      +    V    + E  L +  E    ++RR +    T  E+N+  + +R AS+PNL  +  + +I  GG+ W+  +++ WP + + +YH     A+  ++  L  TL+DRKL+ L+  L + +   L P+V+  +D       ++I+P   +  F
Sbjct:  354 GTIRRRLWTKADFMHIHAITGTYFLALGMAWLLYSHVVGFQNPEQMMGTTGPFLASLLLTGLGNALSAIPMSRFSSDKMFDFEDLKANGFTIGGTGLTCMSLWVAWWFSGSYPDALEPLNTAFFFLWAAICVGSTANWEYMLQQNFENSTGKARRGKFGKQTQDEMNKKALLYRIASWPNLTQLMFISSIPLGGREWVGSMTDTWPMQMIPMYHYGLVSAIGYALSMLAETLRDRKLIDLQTDLMLLIFGFLIPIVSVVVDSVTYGDAITINPLDYWVIF 633          
BLAST of jgi.p|Trimin1|349517 vs. uniprot
Match: A0A7S2G1V3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G1V3_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.030e-13
Identity = 48/144 (33.33%), Postives = 70/144 (48.61%), Query Frame = 1
Query:  238 RMWTKMDFLHLHAISGVAFSGVGTLWIMKYLYD---AAQGAPMQAAPDA--------LSLGLLTVGAINCFSCLPMTSNPN---------QAGGFKFLGVGMTLNSIWQAWWVSGTYPAGLASVDPWLAGAFLIAIVSGIVDSE 609
            R+WTK D+LH+HA+SGV F G GT+W    +Y+   +      + APD+        L+  LL  G +N  + +PM+   +         +  GF   G G+T   +W AWW SG YP  L   D  L   F +  V+  V+ E
Sbjct:  133 RIWTKADYLHMHAVSGVVFLGGGTVWQASRVYELFTSGHAGMGELAPDSSIFAAGGPLAFSLLLGGLVNGLTAIPMSQFSSNKVFDLSDLKGNGFSLGGTGLTTMCLWMAWWFSGNYPDFLHEYDSPLVLFFSLLCVATTVNWE 276          
BLAST of jgi.p|Trimin1|349517 vs. uniprot
Match: A0A7S3TLB5_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TLB5_9SPIT)

HSP 1 Score: 58.5 bits (140), Expect = 1.700e-6
Identity = 49/162 (30.25%), Postives = 71/162 (43.83%), Query Frame = 1
Query:  169 VAAVAIPAAPGTSKRNWWGLMKQRMWTKMDFLHLHAISGVAFSGVGTLWIMKY-------LYDAAQGAPMQAAPDALSLGLLTVGAINCFSCLPMTSNPNQAGGFK-FLGVGMTLNS---------------IWQAWWVSGTYPAGLASVDPWLAGAFLIAI 585
            V  VA  AA   +  + W ++ +RMWT+ D LH+HAISG+A +G+G ++++         L+      P    P  + L  + VGAIN  S L     P     F+  LG G   N                 +Q+  V   YPA L  +DP  A   L A+
Sbjct:   17 VVEVAGGAAVAKAPDSNWNMLGRRMWTQADALHIHAISGIAHTGIGLVYLIDIVVTDLARLFGTTYSGPH--VPIEVVLASMVVGAINAVSGLQPALVPRPFKDFEQLLGFGEDGNLRAAGFVNTAMFYFILTYQSLRVVPDYPAALMPLDPLFAAVSLAAL 176          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349517 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A835YRT3_9STRA5.340e-242100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TUZ9_9STRA7.250e-7645.14Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A0G4EV39_VITBC7.200e-7445.14Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A0G4FM63_VITBC1.690e-7146.02Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
D7FNF1_ECTSI1.450e-3633.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
R1DEB8_EMIHU4.280e-3430.55Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7S0JE95_9EUKA3.000e-2930.11Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
K0SQJ5_THAOC6.070e-2928.21PPPDE domain-containing protein n=1 Tax=Thalassios... [more]
A0A7S2G1V3_9STRA1.030e-1333.33Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S3TLB5_9SPIT1.700e-630.25Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_45contigContig_45:126587..130922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349517|estExt_Genemark1.C_Ctg_450018
Max annot lvl2759|Eukaryota
EggNOG OGs2EG3I@1|root,2SM4Z@2759|Eukaryota
Evalue1.02e-37
Seed ortholog2880.D7FNF1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_005670.1
TranscriptId349839
TrackFilteredModels1
ProteinId349517
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349517gene_6045Tribonema minus UTEX_B_3156 geneContig_45 126587..130922 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349517Trimin1|349517|estExt_Genemark1.C_Ctg_450018Tribonema minus UTEX_B_3156 polypeptideContig_45 126587..130857 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6045_1exon_6045_1Tribonema minus UTEX_B_3156 exonContig_45 126587..127090 +
exon_6045_2exon_6045_2Tribonema minus UTEX_B_3156 exonContig_45 127765..127902 +
exon_6045_3exon_6045_3Tribonema minus UTEX_B_3156 exonContig_45 129953..130008 +
exon_6045_4exon_6045_4Tribonema minus UTEX_B_3156 exonContig_45 130536..130922 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6045CDS_6045Tribonema minus UTEX_B_3156 CDSContig_45 126587..127090 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6045UTR3_6045Tribonema minus UTEX_B_3156 three_prime_UTRContig_45 130858..130922 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6045 ID=mRNA_6045|Name=jgi.p|Trimin1|349517|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1085bp|location=Sequence derived from alignment at Contig_45:126587..130922+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGCCAGGGAGGAGGGGAGCGGTGGCATGGGCAGCAGGCCAGCGAG
GTCGGAGCTGTTTGCCGGCAGCGCGGTGTCGGAGCTGGAGGGAGTCGCTG
TAGAGGAGGAGCAGGAATTGATGAGCGCTCTGGCGGATGACCTGCTGCTG
CAGCCAGAAGCCACTGCGGTAGCTGCTGTAGCCATCCCGGCGGCACCAGG
GACTTCTAAGAGAAATTGGTGGGGGCTCATGAAGCAGCGCATGTGGACCA
AAATGGACTTTCTGCACCTGCACGCTATCTCCGGTGTCGCCTTCAGCGGA
GTTGGCACCCTCTGGATCATGAAGTACCTGTACGACGCTGCGCAGGGAGC
ACCTATGCAGGCAGCCCCTGATGCCCTGTCGTTGGGGCTGCTGACGGTCG
GTGCCATCAACTGCTTCAGCTGCCTGCCCATGACCTCGAACCCCAACCAG
GCAGGCGGTTTCAAATTTCTCGGCGTGGGCATGACTCTCAACTCCATTTG
GCAGGCATGGTGGGTGTCGGGCACATACCCGGCGGGGCTGGCGTCGGTGG
ACCCCTGGTTGGCTGGTGCTTTCTTGATAGCAATAGTTTCTGGAATTGTG
GACAGCGAGGTGGCGCTGTCAAGGGAGCTGGGGATAATGCAGTCGCGGAG
GGTGCAGCCCACGGACGTGGAGGTCAATGAGACCGTCATCAACCACAGGG
CCGCGTCGTACCCCAACCTCCTGCACATCCCCGTCCTCTACAACATCCTC
GCGGGCGGGCAGCCGTGGCTCGCGCGCGTCTCCGAGCGCTGGCCCGCGGA
GCCCATGATGCTGTACCACGCGTGCTTTGCGATCGCCGTCGCCAACTCGA
TCGTCTTCCTGTGCGCGACGCTCAAGGACCGCAAGCTCATGACGCTGCGC
GCATGGCTGTACGTGCAGCTCATCGTGCTCGCGCCGCTGGTGACGACGGC
CATCGACCTGCACGCCGCGCCCGGCCAGCTGAGCATCGACCCCACGCAGG
TGTACGCGGGCTTCATCTGAGCGCGCGCGCGCGGCAGTCTCGATTCACTT
GTTTCAGGGGCGGATTTAGGGCGCGGCGGGAACGG
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protein sequence of jgi.p|Trimin1|349517

>Trimin1|349517|estExt_Genemark1.C_Ctg_450018 ID=Trimin1|349517|estExt_Genemark1.C_Ctg_450018|Name=jgi.p|Trimin1|349517|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=340bp
MVAREEGSGGMGSRPARSELFAGSAVSELEGVAVEEEQELMSALADDLLL
QPEATAVAAVAIPAAPGTSKRNWWGLMKQRMWTKMDFLHLHAISGVAFSG
VGTLWIMKYLYDAAQGAPMQAAPDALSLGLLTVGAINCFSCLPMTSNPNQ
AGGFKFLGVGMTLNSIWQAWWVSGTYPAGLASVDPWLAGAFLIAIVSGIV
DSEVALSRELGIMQSRRVQPTDVEVNETVINHRAASYPNLLHIPVLYNIL
AGGQPWLARVSERWPAEPMMLYHACFAIAVANSIVFLCATLKDRKLMTLR
AWLYVQLIVLAPLVTTAIDLHAAPGQLSIDPTQVYAGFI*
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mRNA from alignment at Contig_45:126587..130922+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6045 ID=mRNA_6045|Name=jgi.p|Trimin1|349517|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4336bp|location=Sequence derived from alignment at Contig_45:126587..130922+ (Tribonema minus UTEX_B_3156 )
ATGGTCGCCAGGGAGGAGGGGAGCGGTGGCATGGGCAGCAGGCCAGCGAG GTCGGAGCTGTTTGCCGGCAGCGCGGTGTCGGAGCTGGAGGGAGTCGCTG TAGAGGAGGAGCAGGAATTGATGAGCGCTCTGGCGGATGACCTGCTGCTG CAGCCAGAAGCCACTGCGGTAGCTGCTGTAGCCATCCCGGCGGCACCAGG GACTTCTAAGAGAAATTGGTGGGGGCTCATGAAGCAGCGCATGTGGACCA AAATGGACTTTCTGCACCTGCACGCTATCTCCGGTGTCGCCTTCAGCGGA GTTGGCACCCTCTGGATCATGAAGTACCTGTACGACGCTGCGCAGGGAGC ACCTATGCAGGCAGCCCCTGATGCCCTGTCGTTGGGGCTGCTGACGGTCG GTGCCATCAACTGCTTCAGCTGCCTGCCCATGACCTCGAACCCCAACCAG GCAGGCGGTTTCAAATTTCTCGGCGTGGGCATGACTCTCAACTCCATTTG GCAGGTGCGTGCATGCGACCATACCGAAGCGCCTAACATTATTGGCTGGT ACACATGATGGATGCCGCTTTTTGTAAACCACGTCGATTATCTACGATGC TTCTTACTCTCTTACTGCTCCTGCATGCAATTCTGGCATGTGGCGCGTTG ACATTTTTGCTGAGAAGCTGAAGTGCTTGACAAGGTGTGAGCTTCAGTTC CACTCCAACAAGCCGGTAAGGTGGCAGTAGTAACTGGGGTTGCATATTAC CCTGCTCTTATTGCACCATAGGCTTGATGCAGTGACCGGCCCACCTCAAG TTTGCTGATGTGTCGTTGTGCGCACTGCTCAACCAACATCTGTTCTGCTC AACATGTCATGTCGGCAGCACCTTTATGGCATTTAACCTGAGCTCAATCC CTCTCTATCAGTCGACACTTGCAGTACACTTCATGTACTCTCATGGGTAC ATTCCCGCGACCTGCCTCACCGCAGAAATGGAAGCCTGACGGTCATCCAC CTTGCCGTGTTTACAAGGATATGGCTCGCTAATGCTACGTAGATGGCTCC GCTGCCTGCTTCTCCTGCTCAGAGAGCCTCATCTGTCTCACTGCAATCTT CACTGCAACCTTGCTTCTCCTGCTCAGAGAGCCTCATCTGTCTCACTGGA ATCTTCACTGCAACCTTGCTGCTGACAGGCATGGTGGGTGTCGGGCACAT ACCCGGCGGGGCTGGCGTCGGTGGACCCCTGGTTGGCTGGTGCTTTCTTG ATAGCAATAGTTTCTGGAATTGTGGACAGCGAGGTGGCGCTGTCAAGGGA GCTGGGGATAATGCAGGTGAGTGCTGGACTGGTCATAATTGGTATGTCTG CCACATCTCATTGCACGTGACATTCCTCACTTCTCTTGATGCCAAACAAT ACTGACACCACTGCCGATCATGATGATTGCGGCATGTCAGGGGCCGAGCT GGCACCTCTGGCACGAATGGGGGTCATCGTGAACATCTGCGTCAACCTGC ACCTGTTGACTGTAGGGAGCAATGCCTTTGCAATCATGTTTCAGCTCTGT AGGCGGGTGACGACGGTTCAGCGCTATGTCTACTTTCTGCAGCAGAATAG TGCATCACACCTGACCTGATGCGAGTGCATGACAGATGATCATCTGATGC ACCGCTGCCCAACAGGCTTGCATAGAAGCATTAGTGAACTTGCAATGTGC AATCATGTGAGGTACATGGCTTGTGGGCTTTCATGATGATGCGTAATGTA GGTACATGCAAGCTGTCAGCCATTTCTTTTAGTGAGAACATCCTTCCTTA AGCAGTCAATATGGTTGATCGCGGACACGCTGGTGTCAGTGAGCAGCCTG AGTGTTGATGCAGGCTTCAGCTAGCAGCTGGGCAGAGGTGCAGGAAGGGC ATGCACGTGAACAGGGTGGAAAATAATATGTTGGTTGTTTGTGCGCCGCC TAGTGTATCATCACAACTGCGGTTGCCACTTGGTGTTTCTCTTAAATCTC GATGCCCTTTGGTGACCTGTGTCATACCAATAACAGGCAGTGGAGTCTAC TAAATGTAGCAGGAGCAGGCCCCAATGCATAAAGCTGTGAGATGCAGTCT TATGCCTTGTTGTGCTTGCAGTGGTGGCCATACTCGGGTTCAAGTTCCCC TGCCTAGCTTTGTGCTATCCACAATGACCTTGGCGGTGGATTTGAGTGCC ATATTTGCTTGCATCTACTTGCTGAGCATCAGCAGTGGCAAGGCATGGCC GTCTATGTCTCACTTGCCATTGTAACGCATGGCATTGGCTCTTGAAAGTC GTATGTGTGGGGGACAGCAAAATCAGCGGCTTAAGGCAGCTGAAGGACAG CAATGACGCGGCGGTTGGCAGCAGAAGCAGGCACTCAGGCTGAAGCTGAA GCTGCACACTGACACTCAAGCTGAAGCTGCACACAGCCTGAATGCCTGCT GCTGCCACGGGCCCCCGTGTCATTTTCCTCAGCTACAAGTCTGTTGGTAT TAAGCCGCAGCTCGATGACTTGCTATCCCCACATACCACTTCCAAGAGCT AATACCGTACGTCACTATGGCAAGTGAACAATAACGGCCAAGCCTTGCCA CTGCCAATACTCACCAAGTAGATGCTAGCTACTATGGCGCCCAAAACCAG CGCCAAGGTCATGGACAGCACCAACAGCCAGGCAGGTGAACTTGAGCCCA AGTATGGCCGCCACAGCAAGCACAGCAAGGCATGATTGTGGGTGAGACCG CATTGACAAAGGGCGATGCATGAAGCATCACTGAGAGCACACTGTCAGGT ACTGCCAGATCGACATACCATTACGTCAAGGCTGGCGTTAAAGCAGACAG TGGGTGTTATGTAACACGCGCACAGTCACTTGCGGTCCTATGCATCACCG CTGGTATAGCAGCATACAATGCCGTACTGCATGGCACGCCATCTTCTGCG GTTCACGATGTGTACAATGGAACTACGATCTTTTGATTCGTTTCCATGAT GTTTGTTGTTTACAATCACATTTTTGTTGGATATTATCAAATCAAAGTGT CAAGATGTGTTGAAGTCCCCCAAGTTGAAGTGACAACAGCTCAAGGACGA GAGGTGTTGCAACATTGTTTTATCTGTAGGCAATTTGGTGTTGTCTGAAT AGTCAGGCAGTGGAGAACATGATGACTGGCAATGTCGTCGCGAGTGCTAC AGAAAACTTACCGCAACCGCATCCCCTTAAACCGAGTTTGGGCAGTCCGA AGGCAACCCATTGCATCATCTGCATCTTAAAAATCAACATCAACATCAAC ATGCCCACATGTTTCTTGCTACTGGTCCTGAACATGTCATGCATTGTCTG CAATGCTGCGCTGCAGTCGCGGAGGGTGCAGCCCACGGACGTGGAGGTCA ATGAGACCGTCATCAACCACAGGTGTTTATGCATACACCCCTTCTCTATT TGTGAACCTCACAAATGAAGTTGCTACCACCCACAAGGAGAAGAGGCTTT GCCGATGTCATTGGCATTGCTCGCATGTCTGGACTGTACCAGTGGCCAAG GTTACTGTGCTGATCAGGCTTATCTGAGTCGACTTGGTTGTAGTTCAAGT GCAGGGTCACTTCACATTGTAGGTGCACGTGTTTATCACATAGCACAGCG TGGCGCATGCCTTGGAGCACATTCATAATTTATGGTTTGTTGTTGATCGT TGGCCACAGCGAGAGTCCCATTTTCAGGCATGGGTTACTACGCAACTTGC TGTGGCCTCCAGCCCCACCACGTGCGTGACGATCATCAGAATGCACACTC ACATGCCGCATGAGAGTGCAACATCCTCCCATAGTTCACCGCTCGCGCGC GACCATCGCCGAACCGCCGCATTTTCCTGTACGCCTGGAATCTCCCATGT CCCCCTCCCTCCCTCTGCCCCCCCCCCCCCCCCCCCCCCCCCCCTGCAGG GCCGCGTCGTACCCCAACCTCCTGCACATCCCCGTCCTCTACAACATCCT CGCGGGCGGGCAGCCGTGGCTCGCGCGCGTCTCCGAGCGCTGGCCCGCGG AGCCCATGATGCTGTACCACGCGTGCTTTGCGATCGCCGTCGCCAACTCG ATCGTCTTCCTGTGCGCGACGCTCAAGGACCGCAAGCTCATGACGCTGCG CGCATGGCTGTACGTGCAGCTCATCGTGCTCGCGCCGCTGGTGACGACGG CCATCGACCTGCACGCCGCGCCCGGCCAGCTGAGCATCGACCCCACGCAG GTGTACGCGGGCTTCATCTGAGCGCGCGCGCGCGGCAGTCTCGATTCACT TGTTTCAGGGGCGGATTTAGGGCGCGGCGGGAACGG
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Coding sequence (CDS) from alignment at Contig_45:126587..130922+

>mRNA_6045 ID=mRNA_6045|Name=jgi.p|Trimin1|349517|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1020bp|location=Sequence derived from alignment at Contig_45:126587..130922+ (Tribonema minus UTEX_B_3156 )
ATGGTCGCCAGGGAGGAGGGGAGCGGTGGCATGGGCAGCAGGCCAGCGAG
GTCGGAGCTGTTTGCCGGCAGCGCGGTGTCGGAGCTGGAGGGAGTCGCTG
TAGAGGAGGAGCAGGAATTGATGAGCGCTCTGGCGGATGACCTGCTGCTG
CAGCCAGAAGCCACTGCGGTAGCTGCTGTAGCCATCCCGGCGGCACCAGG
GACTTCTAAGAGAAATTGGTGGGGGCTCATGAAGCAGCGCATGTGGACCA
AAATGGACTTTCTGCACCTGCACGCTATCTCCGGTGTCGCCTTCAGCGGA
GTTGGCACCCTCTGGATCATGAAGTACCTGTACGACGCTGCGCAGGGAGC
ACCTATGCAGGCAGCCCCTGATGCCCTGTCGTTGGGGCTGCTGACGGTCG
GTGCCATCAACTGCTTCAGCTGCCTGCCCATGACCTCGAACCCCAACCAG
GCAGGCGGTTTCAAATTTCTCGGCGTGGGCATGACTCTCAACTCCATTTG
GCAGGCATGGTGGGTGTCGGGCACATACCCGGCGGGGCTGGCGTCGGTGG
ACCCCTGGTTGGCTGGTGCTTTCTTGATAGCAATAGTTTCTGGAATTGTG
GACAGCGAGGTGGCGCTGTCAAGGGAGCTGGGGATAATGCAGTCGCGGAG
GGTGCAGCCCACGGACGTGGAGGTCAATGAGACCGTCATCAACCACAGGG
CCGCGTCGTACCCCAACCTCCTGCACATCCCCGTCCTCTACAACATCCTC
GCGGGCGGGCAGCCGTGGCTCGCGCGCGTCTCCGAGCGCTGGCCCGCGGA
GCCCATGATGCTGTACCACGCGTGCTTTGCGATCGCCGTCGCCAACTCGA
TCGTCTTCCTGTGCGCGACGCTCAAGGACCGCAAGCTCATGACGCTGCGC
GCATGGCTGTACGTGCAGCTCATCGTGCTCGCGCCGCTGGTGACGACGGC
CATCGACCTGCACGCCGCGCCCGGCCAGCTGAGCATCGACCCCACGCAGG
TGTACGCGGGCTTCATCTGA
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