mRNA_18802 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|68411 vs. uniprot
Match: A0A835Z4N7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N7_9STRA) HSP 1 Score: 260 bits (665), Expect = 1.190e-87 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1
Query: 40 MAEEAGYDPKRSKVTDEKLAEFIRQPITGELTEVPGIGPAAVKKLAAGEGSNKVANTYQLIGKFLSLKGGDDSGKTIQTIEHCDRFWYWLKEMGISSYRSGIVNAIAEKCNTWIPGIYDEDQYDA 414
MAEEAGYDPKRSKVTDEKLAEFIRQPITGELTEVPGIGPAAVKKLAAGEGSNKVANTYQLIGKFLSLKGGDDSGKTIQTIEHCDRFWYWLKEMGISSYRSGIVNAIAEKCNTWIPGIYDEDQYDA
Sbjct: 1 MAEEAGYDPKRSKVTDEKLAEFIRQPITGELTEVPGIGPAAVKKLAAGEGSNKVANTYQLIGKFLSLKGGDDSGKTIQTIEHCDRFWYWLKEMGISSYRSGIVNAIAEKCNTWIPGIYDEDQYDA 125
BLAST of jgi.p|Trimin1|68411 vs. uniprot
Match: D7FQ44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ44_ECTSI) HSP 1 Score: 177 bits (449), Expect = 1.000e-54 Identity = 81/120 (67.50%), Postives = 96/120 (80.00%), Query Frame = 1
Query: 49 EAGYDPKRSKVTDEKLAEFIRQPITGELTEVPGIGPAAVKKLAAGEGSNKVANTYQLIGKFLSLKGGDDSGKTIQTIEHCDRFWYWLKEMGISSYRSGIVNAIAEKCNTWIPGIYDEDQY 408
E GYDPKRSKV+D+KLAEFIR +TG+LTEVPGI + LA GEG +KV NTYQLIGKFL+L+G D + + ++EHCD+FWYWL+ GI+S RSGIVNAIAEK NTWIPGIYD D Y
Sbjct: 3 EVGYDPKRSKVSDDKLAEFIRSAVTGDLTEVPGIAARGAEILADGEGDDKVTNTYQLIGKFLALRGPDKTDHEVDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPGIYDADSY 122
BLAST of jgi.p|Trimin1|68411 vs. uniprot
Match: K0QZN8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZN8_THAOC) HSP 1 Score: 157 bits (396), Expect = 1.260e-46 Identity = 70/119 (58.82%), Postives = 90/119 (75.63%), Query Frame = 1
Query: 55 GYDPKRSKVTDEKLAEFIRQPITGELTEVPGIGPAAVKKLAAGEGSNKVANTYQLIGKFLSLKGGDDSGKTIQTIEHCDRFWYWLKEMGISSYRSGIVNAIAEKCNTWIPGIYDEDQYD 411
GYDPKRS+V+D+ L +FIR + G++TEVPGIGPAA KKLA GE + NTYQLIGKFL LKG D ++++EHC++FWYWL++ IS++RS IV AIA K N +PG+YD D YD
Sbjct: 5 GYDPKRSRVSDDSLMDFIRAQVQGDITEVPGIGPAAAKKLAEGEHDECITNTYQLIGKFLMLKGPDTDDNKVESMEHCEKFWYWLQDKQISAHRSAIVKAIAMKVNGLLPGVYDADLYD 123
BLAST of jgi.p|Trimin1|68411 vs. uniprot
Match: A0A2D4C4D0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4D0_PYTIN) HSP 1 Score: 155 bits (393), Expect = 3.090e-46 Identity = 74/120 (61.67%), Postives = 91/120 (75.83%), Query Frame = 1
Query: 55 GYDPKRSKVTDEKLAEFIRQPITGELTEVPGIGPAAVKKLAAGEGSNKVANTYQLIGKFLSLKGGDDSGKT--IQTIEHCDRFWYWLKEMGISSYRSGIVNAIAEKCNTWIPGIYDEDQY 408
GYDP++S+V ++ LA+F+R P+TG+LTEVPGIG AAV KLAAGE ++V NT+QLIGKFL LK D + I EHCD FWYWLK GI +YRSGIV AIAEK NT +PGIYD ++
Sbjct: 4 GYDPQKSRVAEDTLADFLRAPLTGDLTEVPGIGKAAVGKLAAGEEGDRVENTFQLIGKFLMLKQSTDKNEDGLIDCAEHCDAFWYWLKSKGIQAYRSGIVMAIAEKVNTMLPGIYDAAEF 123
BLAST of jgi.p|Trimin1|68411 vs. uniprot
Match: A0A6U3Z2B1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Z2B1_9STRA) HSP 1 Score: 155 bits (393), Expect = 4.090e-46 Identity = 76/128 (59.38%), Postives = 99/128 (77.34%), Query Frame = 1
Query: 40 MAEEAGYDPKRSKVTDEKLAEFIRQPITGELTEVPGIGPAAVKKLAA-GEGS---NKVANTYQLIGKFLSLKGGDDSGKTIQTIEHCDRFWYWLKEMGISSYRSGIVNAIAEKCNTWIPGIYDEDQYD 411
MAE GYDP+RSKV+D+ A F R ++GELT+VPGIGPAA KKL G+G ++V NTYQLIGKFL LKG D+ G ++++EH ++FW++LK+ GISS+RSGIV AIAEK NT +PGIYD +Y+
Sbjct: 1 MAE--GYDPRRSKVSDDTFASFQRDALSGELTDVPGIGPAAAKKLGQIGDGETEFDRVTNTYQLIGKFLMLKGPDEDGNKVESVEHMEKFWWYLKQKGISSHRSGIVRAIAEKVNTMLPGIYDASEYE 126
BLAST of jgi.p|Trimin1|68411 vs. uniprot
Match: A0A7S2MQ62_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MQ62_9STRA) HSP 1 Score: 155 bits (392), Expect = 8.170e-46 Identity = 76/128 (59.38%), Postives = 97/128 (75.78%), Query Frame = 1
Query: 40 MAEEAGYDPKRSKVTDEKLAEFIRQPITGELTEVPGIGPAAVKKLAA----GEGSNKVANTYQLIGKFLSLKGGDDSGKTIQTIEHCDRFWYWLKEMGISSYRSGIVNAIAEKCNTWIPGIYDEDQYD 411
MAE GYDP+RSKV + A F R+ +TGELT+VPGIGPAA +KL + S+++ NTYQLIGKFL LKG D+ G ++++EH ++FW++LKE GISS+RSGIV AIAEK NT IPGIYD +YD
Sbjct: 10 MAE--GYDPRRSKVNESTFANFQREQLTGELTDVPGIGPAAARKLGEIGDEEKDSDRITNTYQLIGKFLMLKGPDEDGHKVESMEHMEKFWWFLKEKGISSHRSGIVRAIAEKVNTMIPGIYDASEYD 135
BLAST of jgi.p|Trimin1|68411 vs. uniprot
Match: K3WZ09_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WZ09_GLOUD) HSP 1 Score: 154 bits (390), Expect = 9.100e-46 Identity = 72/120 (60.00%), Postives = 91/120 (75.83%), Query Frame = 1
Query: 55 GYDPKRSKVTDEKLAEFIRQPITGELTEVPGIGPAAVKKLAAGEGSNKVANTYQLIGKFLSLKGGDDSGKT--IQTIEHCDRFWYWLKEMGISSYRSGIVNAIAEKCNTWIPGIYDEDQY 408
GYDP++S+V ++ LA+F+R P+TG+LTEVPGIGPAAV KLAAGE ++V NT+QLIGKFL LK D + HCD FW+WLK GI++YRSGIV AIAEK NT +PGIYD ++
Sbjct: 5 GYDPQKSRVAEDTLADFLRAPLTGDLTEVPGIGPAAVTKLAAGEDGDQVGNTFQLIGKFLLLKKNSDENDDGLLDCAAHCDAFWFWLKSKGITAYRSGIVMAIAEKVNTMLPGIYDAAEF 124
BLAST of jgi.p|Trimin1|68411 vs. uniprot
Match: A0A7S2R0A3_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R0A3_9STRA) HSP 1 Score: 153 bits (386), Expect = 5.030e-45 Identity = 72/124 (58.06%), Postives = 91/124 (73.39%), Query Frame = 1
Query: 40 MAEEAGYDPKRSKVTDEKLAEFIRQPITGELTEVPGIGPAAVKKLAAGEG-SNKVANTYQLIGKFLSLKGGDDSGKTIQTIEHCDRFWYWLKEMGISSYRSGIVNAIAEKCNTWIPGIYDEDQY 408
MA+ GYDP RSKV+D + +F+R ITG++TEVPGIGPAA + LA G+ S+++ NT+QLIGKFL LKG D+ I +EH ++FWYWLK+ GI S+RS IV AI EK NT IPGIYD Y
Sbjct: 1 MADALGYDPSRSKVSDSTMTDFLRSQITGDVTEVPGIGPAAKRALAGGDDESDRITNTFQLIGKFLMLKGPDEDDMKIDCMEHMEKFWYWLKQKGIKSHRSAIVKAIGEKINTMIPGIYDASIY 124
BLAST of jgi.p|Trimin1|68411 vs. uniprot
Match: F0WQ47_9STRA (Uncharacterized protein AlNc14C194G8527 n=2 Tax=Albugo TaxID=65356 RepID=F0WQ47_9STRA) HSP 1 Score: 151 bits (382), Expect = 1.450e-44 Identity = 69/121 (57.02%), Postives = 92/121 (76.03%), Query Frame = 1
Query: 55 GYDPKRSKVTDEKLAEFIRQPITGELTEVPGIGPAAVKKLAAGEGSNKVANTYQLIGKFLSLKGGDDSGKT--IQTIEHCDRFWYWLKEMGISSYRSGIVNAIAEKCNTWIPGIYDEDQYD 411
GYDP++S++ +++LA+F+R P+TG+L EVPGIG AA+ KLA+GE ++V NTYQLIGKFL LK D+ + I+ HCD FWYWLK I++YRSGIV AIAEK NT +PGIYD ++
Sbjct: 4 GYDPQKSRIAEDRLADFLRAPLTGDLLEVPGIGSAAISKLASGEEEDRVCNTYQLIGKFLMLKKNDEENEEELIECSAHCDAFWYWLKSKQITAYRSGIVMAIAEKVNTMLPGIYDAADFN 124
BLAST of jgi.p|Trimin1|68411 vs. uniprot
Match: A0A1V9Z038_9STRA (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9Z038_9STRA) HSP 1 Score: 148 bits (374), Expect = 2.460e-43 Identity = 69/116 (59.48%), Postives = 92/116 (79.31%), Query Frame = 1
Query: 55 GYDPKRSKVTDEKLAEFIRQPITGELTEVPGIGPAAVKKLAAGEG-SNKVANTYQLIGKFLSLKGGDD-SGKTIQTIEHCDRFWYWLKEMGISSYRSGIVNAIAEKCNTWIPGIYD 396
GY+P++S++ ++ LA+F+R P+TG LTEVPGIGPAA KKLA+G+ +++V NT+QLIGKFL LK DD + + I HCD FW+WLK G++SYRSGIV AIAEK NT +PG+YD
Sbjct: 5 GYNPEKSRIAEDTLADFLRAPLTGVLTEVPGIGPAAAKKLASGDDIADQVTNTFQLIGKFLMLKRNDDETDEPIDCPTHCDAFWHWLKSKGVTSYRSGIVMAIAEKVNTMVPGVYD 120
BLAST of jgi.p|Trimin1|68411 vs. uniprot
Match: A0A836CCZ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCZ3_9STRA) HSP 1 Score: 216 bits (551), Expect = 2.710e-68 Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 3
Query: 180 MEQRLRQPGANEDADTKAAIEASLQTASAHSASLSGATHNTAPCTMGQQLQQPWQQXXXXXXXXXARGRSSEQHAAPQQGRPQAAMQSSLSPIPPPVATMSNNTPCQPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAGRGSAPPRGHGGKGKGGGRR 662
MEQRLRQPGANEDADTKAAIEASLQTASAHSASLSGATHNTAPCTMGQQLQQPWQQXXXXXXXXXARGRSSEQHAAPQQGRPQAAMQSSLSPIPPPVATMSNNTPCQPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAGRGSAPPRGHGGKGKGGGRR
Sbjct: 1 MEQRLRQPGANEDADTKAAIEASLQTASAHSASLSGATHNTAPCTMGQQLQQPWQQXXXXXXXXXARGRSSEQHAAPQQGRPQAAMQSSLSPIPPPVATMSNNTPCQPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAGRGSAPPRGHGGKGKGGGRR 161 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|68411 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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BLAST of jgi.p|Trimin1|68411 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18802 ID=mRNA_18802|Name=jgi.p|Trimin1|68411|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=470bp|location=Sequence derived from alignment at Contig_445:4776..7134+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCTGAACTAACCGGAGGTGAACACTTGAAGAGCAAAGCCATGGCTGAGGAback to top protein sequence of jgi.p|Trimin1|68411 >Trimin1|68411|CE68410_82 ID=Trimin1|68411|CE68410_82|Name=jgi.p|Trimin1|68411|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=126bp MAEEAGYDPKRSKVTDEKLAEFIRQPITGELTEVPGIGPAAVKKLAAGEGback to top mRNA from alignment at Contig_445:4776..7134+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18802 ID=mRNA_18802|Name=jgi.p|Trimin1|68411|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2359bp|location=Sequence derived from alignment at Contig_445:4776..7134+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_445:4776..7134+ >mRNA_18802 ID=mRNA_18802|Name=jgi.p|Trimin1|68411|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=378bp|location=Sequence derived from alignment at Contig_445:4776..7134+ (Tribonema minus UTEX_B_3156 )back to top |