mRNA_9097 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|349485
Unique Name	mRNA_9097
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|349485 vs. uniprot
Match: A0A835YUZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUZ7_9STRA)

HSP 1 Score: 419 bits (1078), Expect = 2.310e-147
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1

Query:   10 MVSSKARSVVLLVLAALAEVQGFASTCTVGSVGTRQHHSVASAGRLTCSTIGQRGSQRRTSGLCMASDDSAPFEARLLACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSLQQAILIDIALIVLGLLENVTKAVAPGGADVFATLQFYILISAVAYSLVSNLQGKEPNEIPIISEAAQRQIGPF 678
            MVSSKARSVVLLVLAALAEVQGFASTCTVGSVGTRQHHSVASAGRLTCSTIGQRGSQRRTSGLCMASDDSAPFEARLLACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSLQQAILIDIALIVLGLLENVTKAVAPGGADVFATLQFYILISAVAYSLVSNLQGKEPNEIPIISEAAQRQIGPF
Sbjct:    1 MVSSKARSVVLLVLAALAEVQGFASTCTVGSVGTRQHHSVASAGRLTCSTIGQRGSQRRTSGLCMASDDSAPFEARLLACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSLQQAILIDIALIVLGLLENVTKAVAPGGADVFATLQFYILISAVAYSLVSNLQGKEPNEIPIISEAAQRQIGPF 223

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BLAST of jgi.p|Trimin1|349485 vs. uniprot
Match: D7G3C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C5_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 1.560e-36
Identity = 69/147 (46.94%), Postives = 95/147 (64.63%), Query Frame = 1

Query:  235 RLLACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSLQQAILIDIALIVLGLLENVTKAVAPGGADVFATLQFYILISAVAYSLVSNLQGKEPNEIPIISEAAQRQIGP 675
            R L    Y+LP+LDG+  GR+V+ AVP +G  V+GVL PALAIW+ VPF+   +F+    + R  + SR +RF++QQAIL+DI  +VLGLL      VAP G        FY L+ AVAY++    +GK  N+IP+IS AA+ Q+GP
Sbjct:   17 RALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEQFVTNFAFYCLVGAVAYAVAETARGKMANQIPLISAAAEIQLGP 163

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BLAST of jgi.p|Trimin1|349485 vs. uniprot
Match: A0A6H5LCJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCJ5_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 6.470e-35
Identity = 69/147 (46.94%), Postives = 95/147 (64.63%), Query Frame = 1

Query:  235 RLLACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSLQQAILIDIALIVLGLLENVTKAVAPGGADVFATLQFYILISAVAYSLVSNLQGKEPNEIPIISEAAQRQIGP 675
            R L    Y+LP+LDG+  GR+V+ AVP +G  V+GVL PALAIW+ VPF+   +F+    + R  + SR +RF++QQAIL+DI  +VLGLL      VAP G        FY L+ AVAY++    +GK  N+IP+IS AA+ Q+GP
Sbjct:  158 RALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEQFVTNFAFYCLVGAVAYAVAETARGKMANQIPLISAAAEIQLGP 304

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BLAST of jgi.p|Trimin1|349485 vs. uniprot
Match: A0A7S0JI91_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JI91_9EUKA)

HSP 1 Score: 131 bits (329), Expect = 4.170e-34
Identity = 73/167 (43.71%), Postives = 102/167 (61.08%), Query Frame = 1

Query:  181 RRTSGLCMASDDSAPFEARLLACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSLQQAILIDIALIVLGLLENVTKAVAPGGADVFAT-LQFYILISAVAYSLVSNLQGKEPNEIPIISEAAQRQIGPF 678
            RR S   +++D  AP   RL    PY+LP LDG G G  +Y  VP   +A  G + P +A++  +PF G  +F+  +F  RN  LSRLVRF++QQA+L+DIALI+ GL   VT  + P    +  T L FY+ +  V Y+   N QGK P+++P++SEAA  QIGPF
Sbjct:   39 RRASNPALSADPPAPAVDRLFGTLPYLLPSLDGFGYGAYIYQNVPGAAQAA-GAVAPFVALFQSLPFAGLVLFIGLSFFTRNAGLSRLVRFNIQQALLLDIALIIPGLFSPVT-GLLPAELQIIGTNLVFYVCLFTVLYATWCNAQGKLPDQVPLLSEAALMQIGPF 203

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BLAST of jgi.p|Trimin1|349485 vs. uniprot
Match: A0A7S0PYH6_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PYH6_9EUKA)

HSP 1 Score: 127 bits (318), Expect = 1.340e-32
Identity = 68/155 (43.87%), Postives = 95/155 (61.29%), Query Frame = 1

Query:  214 DSAPFEARLLACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSLQQAILIDIALIVLGLLENVTKAVAPGGADVFATLQFYILISAVAYSLVSNLQGKEPNEIPIISEAAQRQIGPF 678
            +  P   R+    PYILPVLDG G G  VY  VP  GE V GV+ P +A++  +PF G  +F+  +   RN  LSR+VRF++QQA+L+DIALI+ GL   VT  +      +     FY+ +  V YS  SN QG+ P+++P++SEAA  QIGP+
Sbjct:   39 EEVPAVDRVFGTLPYILPVLDGFGYGIYVYQNVPGAGE-VAGVIAPLVALFQSLPFAGIVLFIGLSLFTRNAGLSRMVRFNIQQALLLDIALIIPGLFSPVTSLLPLELQIIGTNFVFYVCVFTVIYSAWSNAQGELPDQVPVLSEAAMMQIGPY 192

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BLAST of jgi.p|Trimin1|349485 vs. uniprot
Match: A0A7S2AKC4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AKC4_9STRA)

HSP 1 Score: 129 bits (323), Expect = 9.710e-32
Identity = 73/151 (48.34%), Postives = 95/151 (62.91%), Query Frame = 1

Query:  235 RLLACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSLQQAILIDIALIV---LGLLENVTKAVAPGGADVFATLQFYILISAVAYSLVSNLQGKEPNEIPIISEAAQRQIGPF 678
            R+ AC PY+LP+LDG+  G  V+  VP  G     +LGP  AI N +PF G   FL  +  +RN  L+R VRFS+QQAILIDIALI+   +G L ++   ++P          FY LI+ ++YS+ SNL GK PN IP ISEAA+R IGPF
Sbjct:  198 RVFACLPYLLPMLDGLQYGNGVFQMVPGAGATASVILGPFAAIRNAIPFGGLIFFLILSSLSRNENLNRGVRFSMQQAILIDIALILPSLVGGLASIGGEISPVITTPAENFVFYFLIATISYSVGSNLLGKVPNGIPFISEAAERSIGPF 348

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BLAST of jgi.p|Trimin1|349485 vs. uniprot
Match: A0A7S2K655_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K655_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.420e-31
Identity = 70/163 (42.94%), Postives = 97/163 (59.51%), Query Frame = 1

Query:  193 GLCMASDDSAPFEARLLACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSLQQAILIDIALIVLGLLEN-VTKAVAPGGADVFATLQFYILISAVAYSLVSNLQGKEPNEIPIISEAAQRQIGPF 678
            G+   +D+    + ++++C PYILP++DG   GR +Y   P +       LGP + I   VPF GFG+FL      RN ELSR +RF++QQAILIDIALI   L+ + ++K+      +      FY   +A  YS+ SNL GK P  IPIISEAA+R +GPF
Sbjct:    4 GMFDRNDEEVFGQEKIISCLPYILPLMDGDKFGRYIYMRFPPLHVLEQIFLGPLVRIDQAVPFFGFGLFLVLALGGRNPELSRSIRFNVQQAILIDIALIFPELIGSAMSKSTPMYLVEPCTNFVFYAYAAACGYSIFSNLTGKTPKGIPIISEAAERAVGPF 166

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BLAST of jgi.p|Trimin1|349485 vs. uniprot
Match: A0A7S4ES88_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4ES88_CHRCT)

HSP 1 Score: 122 bits (307), Expect = 1.260e-30
Identity = 71/160 (44.38%), Postives = 95/160 (59.38%), Query Frame = 1

Query:  202 MASDDSAPFEARLLACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSLQQAILIDIALIVLGLLENVTKAVAPGGADVFAT-LQFYILISAVAYSLVSNLQGKEPNEIPIISEAAQRQIGPF 678
            M   D AP   R+LA  PY+LP +DG   G  VY  VP +G A+ G   P +A +  +PF G   F+  +   RN  LSR VRF++QQA+L+DIALIV GL   +TK   P    +  T   FY  +  V Y+L SN QGK P+++P++S+AA  QIGPF
Sbjct:   64 MMRTDEAPALERVLATLPYVLPAIDGFAYGLYVYQNVPPIG-AIAGAAFPFVASFESIPFGGLVFFIGMSLFTRNPNLSRFVRFNIQQALLLDIALIVPGLFGPLTKTF-PVELQILGTNFIFYAWVLVVGYALFSNAQGKAPDQVPLLSDAASMQIGPF 221

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BLAST of jgi.p|Trimin1|349485 vs. uniprot
Match: A0A7S2XVV7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVV7_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.300e-30
Identity = 67/160 (41.88%), Postives = 95/160 (59.38%), Query Frame = 1

Query:  202 MASDD-SAPFEARLLACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSLQQAILIDIALIVLGLLENVTKAVAPGGADVFATLQFYILISAVAYSLVSNLQGKEPNEIPIISEAAQRQIGPF 678
            MA DD S P + R+ A  PY LP+ D +  GR ++A  P + E +   +G    I+ GVPF+G  +FLAF+ A+R   + R  RFS+QQA+LIDIALI   L   + K +     +      FY   ++  YS++SN  GK PNEIP+IS++A+  IGPF
Sbjct:   59 MAQDDESVPIDERIFAILPYALPLSDSIEFGRFIFAEFPLLRELLDIFIGIFYDIYRGVPFIGLLIFLAFSVASRTPSIPRFARFSIQQALLIDIALIFPQLFGGLAKELPLSVVEPATNFVFYAAFASCTYSVISNALGKVPNEIPLISQSAETSIGPF 218

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BLAST of jgi.p|Trimin1|349485 vs. uniprot
Match: A0A1X6NJR3_PORUM (Tic20 family protein Ycf60 (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJR3_PORUM)

HSP 1 Score: 113 bits (283), Expect = 6.530e-28
Identity = 61/148 (41.22%), Postives = 91/148 (61.49%), Query Frame = 1

Query:  244 ACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLA-FTFAARNTELSRLVRFSLQQAILIDIALIVLGLLENVTKAVAPGG--ADVFATLQFYILISAVAYSLVSNLQGKEPNEIPIISEAAQRQIGPF 678
            A  PY+LP+LDG+  GR V+   PA+   V   + P   ++ G PF  FG+F A +    RNT  SR VRF+ QQA+LID+ LI+  LL     A    G   +  ++  FY ++++V Y++VSNL+G+ P++IP +SEA + QIGP+
Sbjct:    2 ASAPYLLPLLDGLVFGRFVFERAPALAALVVPAVAPLFRLYRGTPFFAFGIFFALYVLIVRNTGFSRFVRFNTQQALLIDVVLILPQLLGGAVAAAGVPGWILEAGSSTIFYAVVASVVYAVVSNLRGETPDQIPGVSEAVEAQIGPY 149

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BLAST of jgi.p|Trimin1|349485 vs. uniprot
Match: A0A835YUP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUP5_9STRA)

HSP 1 Score: 174 bits (440), Expect = 2.830e-52
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 3

Query:   42 MARSAILGLLLAAGASAFIMPAAPRVPAVTCQVASAAVADAVSTDIDYESQIKKMEMEAKERIKKAFDEATVKSDAEAKERWAALEEDMRKAAASVGL 335
            MARSAILGLLLAAGASAFIMPAAPRVPAVTCQVASAAVADAVSTDIDYESQIKKMEMEAKERIKKAFDEATVKSDAEAKERWAALEEDMRKAAASVGL
Sbjct:    1 MARSAILGLLLAAGASAFIMPAAPRVPAVTCQVASAAVADAVSTDIDYESQIKKMEMEAKERIKKAFDEATVKSDAEAKERWAALEEDMRKAAASVGL 98

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BLAST of jgi.p|Trimin1|349485 vs. uniprot
Match: A0A836C7K0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7K0_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.290e-22
Identity = 66/105 (62.86%), Postives = 75/105 (71.43%), Query Frame = 3

Query:   69 LLAAGASAFIMPAAPR-VPAVTCQVASAAVADAVSTDIDYESQIKKMEMEAKERIKKAFDEATVK---------------SDAEAKERWAALEEDMRKAAASVGL 335
            LL A ASAF+MPAAPR +P  T QVAS+ VADA+++DIDYESQIK ME+EA ERIKKAFD A V                SDAEAKERWA LE +M+ AAASVGL
Sbjct:   12 LLVAAASAFVMPAAPRSLP--TRQVASSGVADALASDIDYESQIKTMELEATERIKKAFDTAIVXXXXXXXXXXXXXXXXSDAEAKERWAKLEGEMKAAAASVGL 114

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349485 vs. uniprot
BLAST of jgi.p|Trimin1|349485 vs. uniprot

BLAST of jgi.p|Trimin1|349485 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835YUZ7_9STRA	2.310e-147	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D7G3C5_ECTSI	1.560e-36	46.94	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5LCJ5_9PHAE	6.470e-35	46.94	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A7S0JI91_9EUKA	4.170e-34	43.71	Hypothetical protein n=1 Tax=Calcidiscus leptoporu...	[more]
A0A7S0PYH6_9EUKA	1.340e-32	43.87	Hypothetical protein n=1 Tax=Coccolithus braarudii...	[more]
A0A7S2AKC4_9STRA	9.710e-32	48.34	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A7S2K655_9STRA	1.420e-31	42.94	Hypothetical protein n=1 Tax=Leptocylindrus danicu...	[more]
A0A7S4ES88_CHRCT	1.260e-30	44.38	Hypothetical protein n=1 Tax=Chrysotila carterae T...	[more]
A0A7S2XVV7_9STRA	2.300e-30	41.88	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A1X6NJR3_PORUM	6.530e-28	41.22	Tic20 family protein Ycf60 (Fragment) n=1 Tax=Porp...	[more]

Pages

BLAST of jgi.p|Trimin1|349485 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YUP5_9STRA	2.830e-52	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836C7K0_9STRA	1.290e-22	62.86	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_44	contig	Contig_44:552501..557230 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|349485\|estExt_Genemark1.C_Ctg_440036
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009526,GO:0009528,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009706,GO:0009941,GO:0016020,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042170,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Description	protein transport
COG category	S
Max annot lvl	2759\|Eukaryota
EggNOG OGs	2BYWW@1\|root,2QUSD@2759\|Eukaryota
Evalue	1.33e-37
Seed ortholog	2880.D7G3C5
Hectar predicted targeting category	signal peptide
Ec32 ortholog description	conserved unknown protein
Ec32 ortholog	Ec-21_002820.1
TranscriptId	349807
Track	FilteredModels1
ProteinId	349485

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349485	gene_9097	Tribonema minus UTEX_B_3156	gene	Contig_44 552501..557230 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349485	Trimin1\|349485\|estExt_Genemark1.C_Ctg_440036	Tribonema minus UTEX_B_3156	polypeptide	Contig_44 552510..557138 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_9097_1	exon_9097_1	Tribonema minus UTEX_B_3156	exon	Contig_44 552501..552747 +
exon_9097_2	exon_9097_2	Tribonema minus UTEX_B_3156	exon	Contig_44 553574..553710 +
exon_9097_3	exon_9097_3	Tribonema minus UTEX_B_3156	exon	Contig_44 554365..554409 +
exon_9097_4	exon_9097_4	Tribonema minus UTEX_B_3156	exon	Contig_44 555326..555418 +
exon_9097_5	exon_9097_5	Tribonema minus UTEX_B_3156	exon	Contig_44 555943..556036 +
exon_9097_6	exon_9097_6	Tribonema minus UTEX_B_3156	exon	Contig_44 557074..557230 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_9097	UTR5_9097	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_44 552501..552509 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_9097	CDS_9097	Tribonema minus UTEX_B_3156	CDS	Contig_44 552510..552747 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_9097	UTR3_9097	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_44 557139..557230 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_44:552501..557230+
coding sequence from alignment at Contig_44:552501..557230+

spliced messenger RNA

>mRNA_9097 ID=mRNA_9097|Name=jgi.p|Trimin1|349485|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=773bp|location=Sequence derived from alignment at Contig_44:552501..557230+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAGCATCTCATGGTGTCGAGCAAGGCGCGCTCAGTAGTGCTCCTGGTCCT
GGCAGCTCTTGCAGAAGTGCAGGGGTTTGCCAGCACTTGTACAGTGGGGT
CTGTGGGTACACGGCAGCACCACTCTGTTGCGTCAGCAGGGAGGCTGACA
TGCAGCACCATCGGCCAAAGAGGGAGCCAGCGGCGAACCAGCGGACTTTG
CATGGCTTCTGACGACAGCGCACCTTTCGAAGCGAGATTACTGGCATGCT
TCCCATACATCCTGCCTGTGCTGGATGGCGTGGGCAGCGGCAGGAATGTA
TATGCTGCCGTGCCTGCGGTGGGGGAGGCTGTGTATGGAGTGCTGGGCCC
TGCGCTGGCCATCTGGAATGGGGTCCCCTTCCTGGGGTTTGGTGTTTTCC
TGGCCTTCACGTTTGCGGCAAGAAACACGGAGCTATCGCGCCTGGTGCGG
TTCTCCCTGCAACAGGCCATTTTGATCGACATTGCACTCATCGTGCTGGG
GCTGCTTGAGAACGTTACCAAGGCTGTCGCCCCAGGGGGAGCTGACGTGT
TTGCTACACTGCAGTTCTACATTCTCATCAGCGCTGTGGCTTACTCACTG
GTCAGCAACCTCCAAGGGAAGGAGCCCAATGAGATACCCATCATATCAGA
AGCTGCGCAGCGGCAAATTGGTCCGTTCTAGGCCAGCATGCAGTGGCGCA
GGATGGGCACAGTTATGTCAGCAGGACAAACAACCGTCAACGATTCCGTT
TGTCCAAGGTTGCCCGATTTATT

protein sequence of jgi.p|Trimin1|349485

>Trimin1|349485|estExt_Genemark1.C_Ctg_440036 ID=Trimin1|349485|estExt_Genemark1.C_Ctg_440036|Name=jgi.p|Trimin1|349485|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=224bp
MVSSKARSVVLLVLAALAEVQGFASTCTVGSVGTRQHHSVASAGRLTCST
IGQRGSQRRTSGLCMASDDSAPFEARLLACFPYILPVLDGVGSGRNVYAA
VPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSL
QQAILIDIALIVLGLLENVTKAVAPGGADVFATLQFYILISAVAYSLVSN
LQGKEPNEIPIISEAAQRQIGPF*

mRNA from alignment at Contig_44:552501..557230+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9097 ID=mRNA_9097|Name=jgi.p|Trimin1|349485|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4730bp|location=Sequence derived from alignment at Contig_44:552501..557230+ (Tribonema minus UTEX_B_3156 )
GAGCATCTCATGGTGTCGAGCAAGGCGCGCTCAGTAGTGCTCCTGGTCCT
GGCAGCTCTTGCAGAAGTGCAGGGGTTTGCCAGCACTTGTACAGTGGGGT
CTGTGGGTACACGGCAGCACCACTCTGTTGCGTCAGCAGGGAGGCTGACA
TGCAGCACCATCGGCCAAAGAGGGAGCCAGCGGCGAACCAGCGGACTTTG
CATGGCTTCTGACGACAGCGCACCTTTCGAAGCGAGATTACTGGCATGTG
AGCGGCTTCGTGTTTGCAAGTTTGGTTAGATCCTCCCTTGAAGAATTGTG
GAACATGTCGCAACAAGTCCACAAGCAATCGCATGCAAGCTTGGTAAAGT
AGGCAGTGATGTTGGTTGCATGTGTGCGCTCCCAGCGTGCAGCTGCAACA
CATTTTGACATGATGAACAAGACTATTGTCCCCAACTGAGAGTTCATTAC
TTGGAGTCATTTTCAGTGATTCGTTCTGGTTGTCAGGCATCCCTCGCTTC
AAGGTTTTGCAAACTATGATGTATGCGGTGCTTGGTGCATGTGAAACTGG
TGTTTCACGTGGTCTCGGCGAGGCTGAACCTATTATGAAGGAATTCCTTC
TGCAAGTAGGGCTTCATCTGATGCATCGAGCCTTGTGCTCCTCTTAGAAG
TGAGCCTTGACTCATGCACTGCTCATCCGTGAATCCAATGATGGCAATTC
GTATGCACAAAAAAAGGACGCAACCTGATTATTGACGATTTTGATGGTGT
TGTGATATGAATACGAGGAGCTTCGGCAGCACAGCGACCACCTCTCTGAT
GGCACTCCTGGCTTCTAAACCACACAAGTCAACGAAAGCATGAAGTGCTG
ACTATGACGGGCACACAAGCACAAAGCATACTTTGTAAGTATTCCAACCT
GTGCACAGCCAGCGCACCTCAAAAGTTGCTTTGTGCAATGTGCGTAGGAT
GGGTTCTGGCAGTGGGCATCACCTGCTTGAGCAGGCAGCAGGCAGCACCA
CATTGATACTGCAAACAGAGGCATGGCGCAGCACCAACAACTGATGATAA
TTCCCTTTTTGTTGATTGCGCAGGCTTCCCATACATCCTGCCTGTGCTGG
ATGGCGTGGGCAGCGGCAGGAATGTATATGCTGCCGTGCCTGCGGTGGGG
GAGGCTGTGTATGGAGTGCTGGGCCCTGCGCTGGCCATCTGGAATGGGGT
CCCCTTCCTGGTACGTCTATGCGCGTGAAAATGCAGTGTCTACATGCCAG
TTTGCGTTACAAGGCTCGGCATTGTATGCCTGACGTGGTCACACCAGACA
ACAGCATACATCTGAATCTGATGTAGTGGAATATATTATTCTACTTCGAA
GTATCTAGCTACTATGGTCGCTGATGGCCAGTATGAGAGTTGTGACGTTG
GAAGTACACAGTGTACTACACACCCTTCAGTATGAGAAAATGCATCAGCA
ACGGGCATGATCTGCTTCTCCCATGGCATGTGCTACTTGGGACGATGCCT
TCATTGCTACATATTGTTTCAATGACAGTTTCATGTTGCTGACCCGCTGC
TTGCATTTTGGGCGACCATAACGTGCCGGCAGCTGGTGATGTATGAGGCG
CTGTTGTTCGCCTCAACAAGTGCCGCATTGACCGTCAAACTAGCTCTGTC
CGATTGGCCATGTCCTACGTTCAAAGCAACACGTCCACAGGGTGCCATAC
TAGCCATGTGAAGCCCTGAAACAGGCATATCTAAAACTTTCAGGGACATT
AGAGTCATGTGTGTATGCATGGTCTATGTGCGTGATAGGGTGCTAATATA
TCTGATACTGGTGGTGATTAACACACACTCGGCCTGTGGTCTGTACGTTT
CTTGGGCTTTGCAGGGGTTTGGTGTTTTCCTGGCCTTCACGTTTGCGGCA
AGAAACACGGTGAGATATGCATTCAGATTATCGGCGAGCTTACTTTTAGC
AAATTCATTACTTGTGAGGATTCTGACCCAGCTATATTTTCATGTGACCC
ACCTACCCGTCATTGGTGGCCACTGGAGTGTAACATGGTGAGCCATGACA
CATCATAAACGGCCAACACTGGCAGTTTGATGACCACGGCAGCAGTTTTT
CCATTCTGGACTGGAATGCTATGTTAAGCACACAATGTTTCAGGATTTTG
TGTTGTTGAAATGCTCACCTATTTGAGTCTTTTGAAAGTAGCTGCCTGCA
GATTGTACTCGAGATGTGCAATGCACAATATGCAAAGCCAGACTCAAGTT
AATGTGCCACTGACATTTCTCATTGCTGGTATGGACATCATGACACTTGT
GCAGTGCATTTACGTGTCTCAAGTGTGCTGAGGGTAATGTTATTGCGCCT
GTGCTTTTCCAGCACTTGTCTGAATGTACCCTTGACTTGCCAACCAGCAG
CTCCACACAACAGCAGCAAAATGACATGCTTCTACCTCGAAGTGTAATGC
ATGTGTTGAGTGCACACAGAGGTGGGAGGCGTGTGTCCTTCAAGCCTAAG
TGACGCCGCATCTGTGACACAGCTCAGTAGCACGCATTGAGATGCCGGCA
GGTAGGCAGACTTCAGGGAGGCCGTCAGCAGCAGTGCAGTTGTTGTGAAG
TTGAACATCTTGCTGCACTACATTGTGAGGTGTATGGAACCACAGTGGAA
GTGACAGCCCTGATGAGCTGTGCTGGCAGCGAGGCTGGATGACACCAACT
TCCTAACTGCTGCATTTTTCCAGTAAAATAATGCTACTTTTAGTTAGTTC
AACACAACATGGTCCTCTCAGCTCATCAAAGCCTTTGCCGCTGTCTGTTG
GTGCTGTGCCCGACATCAATTCTAGGAGCTATCGCGCCTGGTGCGGTTCT
CCCTGCAACAGGCCATTTTGATCGACATTGCACTCATCGTGCTGGGGCTG
CTTGAGAACGTTACCAAGGTATGTATAAGTGCGTGAAGCTCCTTGCGTGC
ATCATGAGGTCACACACTGCAACTGTAGTCGTGCCCCTTGATCTTCGTGT
GTACACAACTCCAGAGATCATGGGCCACAACATGTATTTCAATTGTGCTG
GTCGCAAAGCAAATCAGGGACTGACAATGCACAATTCTCTTGCACTGTGC
AATTATTGACTTGAGAAGCTGACATCCTCCTTTCTTGGTGATGCCATTTG
TTGAAGCACCAATCAGGAATGATGTAGGCTAAATTCTGATGTCCCGTGCA
CGAACTTATGTGTGCCGACGAAGATGCGGGTGGCGCTACGTTGTGCTCTG
CTACAAACCCCTGATGGTGACCACTTTGTCCTCGCATTGCTTGCTTCCTT
AGCCAATGTTGTGATAAGCTATGGCAATCACCTGCGGTGCCCACAGTACT
ACTTCAGATTCAATCCAAGGCATTCAGGTTGCAGTTTTGTACAGCTATTC
AGTTGACAGATCGGACAATCTATCTTCGTGTGCTTGATGCAGGCTGTCGC
CCCAGGGGGAGCTGACGTGTTTGCTACACTGCAGTTCTACATTCTCATCA
GCGCTGTGGCTTACTCACTGGTCAGCAACCTCCAAGGTAAGCTGACAACA
CTTCGTACGGAAGTGATAGCAAAGGACTAAATCATAAGCTTGGTTGCTGA
GCTGCATTGAAGAGCTTGGTTGAGGAGCAGCTGTGAAGAGCCAGCTGCGG
AATAGAGTACAAGCTTGGCGAAATGCGTGCCAATAGACTGTTGAGCTGCA
GCCATGGCATGCGTAAAGAGCACGGCTGCGCAGTGCAGGAGATCAAGCTC
CGGCCTAAGCTAGTGCAGTACTTGCATTCGACACTTAAAGTGCTTTTGAT
GTATATAGTGCGGGGTCCAAAGGGCTCGGGTACAGTTAAATAGGCACAAC
ATCTACGTCTAATCAATTCCTGCCTCAATGCCGTTTCTCCTTGCTGCTGA
TTAGTTTTGATGTAAAGCGCTGAGGCTAGATGCAACAAGCTGTCCACATG
GAAGCTGCTTGAGTCTATGCGATAAATTTTTCAGGGAACTGTCTAGAATG
CTACGCAGAGCTGCAGCTGATCACTCGCATCCCTATTTGGGGTGTTTGCG
GCACATCAGTCAGGCGTTGCTGACATCGCGATCAGCATATGAATCACCAC
GCTGTACAGCGCAAGAGAAGGACTTGATGTAAGCTTACACCGATGTCCCA
TGCTCGTAGAACATCATCGTTTGTGTGATGGCCATAGCTGTCTACTTAGT
GGTAAAAGTACGGAATGTCTAATCGGGAAACAGAATGGTGTGAAGGTGGT
GGCTGGTTGCAAATTGGGATTGCACTCCAATGGACACTTTACAGTGGTTC
TTGTATTGAATGTAATTTCACTAATGCCGTTCACAAATTGCTTCAAAAGT
GCTCACGTAGTTCACCACGAGCTATTTGCAAGAACGCACACAGATCTTCA
AACAGAGCTCAAAAGCATGAATCAATGGTAAGCATTCAGCTCAAATGTAA
TGTGCGCAGCGGCGGTATTGATCAACAGGTGCTCTCATTGCACATCCGCA
AGCCTTCGTCGAGCATGCAAGGCCTCATGCTGCTGACTTCAAGTGTCTGC
ATGATAATATTGTGTGTGCGCAGGGAAGGAGCCCAATGAGATACCCATCA
TATCAGAAGCTGCGCAGCGGCAAATTGGTCCGTTCTAGGCCAGCATGCAG
TGGCGCAGGATGGGCACAGTTATGTCAGCAGGACAAACAACCGTCAACGA
TTCCGTTTGTCCAAGGTTGCCCGATTTATT

Coding sequence (CDS) from alignment at Contig_44:552501..557230+

>mRNA_9097 ID=mRNA_9097|Name=jgi.p|Trimin1|349485|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=672bp|location=Sequence derived from alignment at Contig_44:552501..557230+ (Tribonema minus UTEX_B_3156 )
ATGGTGTCGAGCAAGGCGCGCTCAGTAGTGCTCCTGGTCCTGGCAGCTCT
TGCAGAAGTGCAGGGGTTTGCCAGCACTTGTACAGTGGGGTCTGTGGGTA
CACGGCAGCACCACTCTGTTGCGTCAGCAGGGAGGCTGACATGCAGCACC
ATCGGCCAAAGAGGGAGCCAGCGGCGAACCAGCGGACTTTGCATGGCTTC
TGACGACAGCGCACCTTTCGAAGCGAGATTACTGGCATGCTTCCCATACA
TCCTGCCTGTGCTGGATGGCGTGGGCAGCGGCAGGAATGTATATGCTGCC
GTGCCTGCGGTGGGGGAGGCTGTGTATGGAGTGCTGGGCCCTGCGCTGGC
CATCTGGAATGGGGTCCCCTTCCTGGGGTTTGGTGTTTTCCTGGCCTTCA
CGTTTGCGGCAAGAAACACGGAGCTATCGCGCCTGGTGCGGTTCTCCCTG
CAACAGGCCATTTTGATCGACATTGCACTCATCGTGCTGGGGCTGCTTGA
GAACGTTACCAAGGCTGTCGCCCCAGGGGGAGCTGACGTGTTTGCTACAC
TGCAGTTCTACATTCTCATCAGCGCTGTGGCTTACTCACTGGTCAGCAAC
CTCCAAGGGAAGGAGCCCAATGAGATACCCATCATATCAGAAGCTGCGCA
GCGGCAAATTGGTCCGTTCTAG