mRNA_18869 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|182350
Unique NamemRNA_18869
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|182350 vs. uniprot
Match: A0A835YV36_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV36_9STRA)

HSP 1 Score: 123 bits (308), Expect = 7.480e-36
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:    1 MAGERCPQLPPDRSTASHSNSNSTSKQPQTPVIRIWGSTPAGQKACLHLHGIYPYFY 171
            MAGERCPQLPPDRSTASHSNSNSTSKQPQTPVIRIWGSTPAGQKACLHLHGIYPYFY
Sbjct:    1 MAGERCPQLPPDRSTASHSNSNSTSKQPQTPVIRIWGSTPAGQKACLHLHGIYPYFY 57
[Close]
BLAST of jgi.p|Trimin1|182350 vs. uniprot
Match: A0A8K1C3N0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3N0_PYTOL)

HSP 1 Score: 57.4 bits (137), Expect = 3.640e-8
Identity = 21/29 (72.41%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:   85 QTPVIRIWGSTPAGQKACLHLHGIYPYFY 171
            Q PV+R++G+TPAGQKACLH+HG++PYFY
Sbjct:   44 QVPVMRVFGATPAGQKACLHIHGLFPYFY 72
[Close]
BLAST of jgi.p|Trimin1|182350 vs. uniprot
Match: UPI001C8A68B4 (LOW QUALITY PROTEIN: DNA polymerase zeta catalytic subunit n=1 Tax=Puntigrus tetrazona TaxID=1606681 RepID=UPI001C8A68B4)

HSP 1 Score: 57.4 bits (137), Expect = 3.650e-8
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:   85 QTPVIRIWGSTPAGQKACLHLHGIYPYFY 171
            + PV+RIWG+TPAGQK CLHLHG++PY Y
Sbjct:   34 KVPVVRIWGATPAGQKTCLHLHGMFPYIY 62
[Close]
BLAST of jgi.p|Trimin1|182350 vs. uniprot
Match: UPI001CF98815 (DNA polymerase zeta catalytic subunit n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CF98815)

HSP 1 Score: 57.4 bits (137), Expect = 3.650e-8
Identity = 22/29 (75.86%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:   85 QTPVIRIWGSTPAGQKACLHLHGIYPYFY 171
            + PV+RI+GSTPAGQK+CLH+HGI+PYFY
Sbjct:   34 KVPVVRIFGSTPAGQKSCLHVHGIFPYFY 62
[Close]
BLAST of jgi.p|Trimin1|182350 vs. uniprot
Match: UPI00071E515F (DNA polymerase zeta catalytic subunit-like n=1 Tax=Octopus bimaculoides TaxID=37653 RepID=UPI00071E515F)

HSP 1 Score: 56.2 bits (134), Expect = 4.500e-8
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:   85 QTPVIRIWGSTPAGQKACLHLHGIYPYFY 171
            Q PVIRI+GSTPAGQK CLH+HG++PY Y
Sbjct:   29 QVPVIRIFGSTPAGQKTCLHVHGVFPYLY 57
[Close]
BLAST of jgi.p|Trimin1|182350 vs. uniprot
Match: A0A0L8G8L4_OCTBM (DNA_pol_B_exo1 domain-containing protein n=1 Tax=Octopus bimaculoides TaxID=37653 RepID=A0A0L8G8L4_OCTBM)

HSP 1 Score: 56.2 bits (134), Expect = 5.280e-8
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:   85 QTPVIRIWGSTPAGQKACLHLHGIYPYFY 171
            Q PVIRI+GSTPAGQK CLH+HG++PY Y
Sbjct:   29 QVPVIRIFGSTPAGQKTCLHVHGVFPYLY 57
[Close]
BLAST of jgi.p|Trimin1|182350 vs. uniprot
Match: A0A1X2HB89_SYNRA (Uncharacterized protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HB89_SYNRA)

HSP 1 Score: 56.6 bits (135), Expect = 6.800e-8
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   67 STSKQPQTPVIRIWGSTPAGQKACLHLHGIYPYFY 171
            ST    + PVIRI+GSTPAGQKACLH+H  YPYFY
Sbjct:   48 STEPLTKVPVIRIFGSTPAGQKACLHIHQAYPYFY 82
[Close]
BLAST of jgi.p|Trimin1|182350 vs. uniprot
Match: A0A6G0XLP9_9STRA (DNA polymerase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XLP9_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 6.810e-8
Identity = 21/29 (72.41%), Postives = 27/29 (93.10%), Query Frame = 1 
Query:   85 QTPVIRIWGSTPAGQKACLHLHGIYPYFY 171
            + PV+RI+G+TPAGQK C+H+HGIYPYFY
Sbjct:   40 KVPVVRIFGATPAGQKCCVHIHGIYPYFY 68
[Close]
BLAST of jgi.p|Trimin1|182350 vs. uniprot
Match: A0A6I8PC21_ORNAN (DNA polymerase zeta catalytic subunit n=2 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=A0A6I8PC21_ORNAN)

HSP 1 Score: 56.6 bits (135), Expect = 6.840e-8
Identity = 21/30 (70.00%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:   82 PQTPVIRIWGSTPAGQKACLHLHGIYPYFY 171
            P+ PV+R++G+TPAGQK CLHLHGI+PY Y
Sbjct:   33 PKVPVVRVFGATPAGQKTCLHLHGIFPYLY 62
[Close]
BLAST of jgi.p|Trimin1|182350 vs. uniprot
Match: A8IZI7_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IZI7_CHLRE)

HSP 1 Score: 54.3 bits (129), Expect = 8.720e-8
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:   85 QTPVIRIWGSTPAGQKACLHLHGIYPYFY 171
            Q PVIRI+GSTPAGQKAC+H+H  +PYFY
Sbjct:   41 QVPVIRIFGSTPAGQKACVHVHRAFPYFY 69
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|182350 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YV36_9STRA7.480e-36100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A8K1C3N0_PYTOL3.640e-872.41Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI001C8A68B43.650e-872.41LOW QUALITY PROTEIN: DNA polymerase zeta catalytic... [more]
UPI001CF988153.650e-875.86DNA polymerase zeta catalytic subunit n=1 Tax=Prot... [more]
UPI00071E515F4.500e-875.86DNA polymerase zeta catalytic subunit-like n=1 Tax... [more]
A0A0L8G8L4_OCTBM5.280e-875.86DNA_pol_B_exo1 domain-containing protein n=1 Tax=O... [more]
A0A1X2HB89_SYNRA6.800e-871.43Uncharacterized protein n=1 Tax=Syncephalastrum ra... [more]
A0A6G0XLP9_9STRA6.810e-872.41DNA polymerase n=1 Tax=Aphanomyces euteiches TaxID... [more]
A0A6I8PC21_ORNAN6.840e-870.00DNA polymerase zeta catalytic subunit n=2 Tax=Orni... [more]
A8IZI7_CHLRE8.720e-875.86Predicted protein n=1 Tax=Chlamydomonas reinhardti... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_437contigContig_437:12583..12753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|182350|e_gw1.437.4.1
BRITEko00000,ko00001,ko00002,ko01000,ko03400
KEGG ModuleM00293
KEGG Pathwayko01100,ko01524,ko03460,map01100,map01524,map03460
KEGG koko:K02350
EC2.7.7.7
GOsGO:0000731,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010225,GO:0016035,GO:0018130,GO:0019438,GO:0019985,GO:0032991,GO:0033554,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0042276,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0071214,GO:0071478,GO:0071482,GO:0071494,GO:0071704,GO:0071897,GO:0090304,GO:0104004,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
DescriptionDNA polymerase
COG categoryL
Max annot lvl35493|Streptophyta
EggNOG OGsCOG0417@1|root,KOG0968@2759|Eukaryota,37RRF@33090|Viridiplantae,3GCAV@35493|Streptophyta
Evalue2.1e-08
Seed ortholog3218.PP1S265_31V6.1
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId182672
TrackFilteredModels1
ProteinId182350
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|182350gene_18869Tribonema minus UTEX_B_3156 geneContig_437 12583..12753 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18869_1exon_18869_1Tribonema minus UTEX_B_3156 exonContig_437 12583..12753 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18869CDS_18869Tribonema minus UTEX_B_3156 CDSContig_437 12583..12753 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|182350Trimin1|182350|e_gw1.437.4.1Tribonema minus UTEX_B_3156 polypeptideContig_437 12583..12753 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18869 ID=mRNA_18869|Name=jgi.p|Trimin1|182350|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=171bp|location=Sequence derived from alignment at Contig_437:12583..12753+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGGAGAACGCTGCCCACAGTTGCCACCAGACCGCAGCACTGCAAG
TCATAGCAACAGCAATAGCACATCGAAGCAGCCTCAAACACCAGTCATAC
GCATATGGGGCAGCACCCCCGCGGGGCAGAAGGCTTGTTTACACCTCCAT
GGCATTTATCCGTACTTCTAT
back to top

protein sequence of jgi.p|Trimin1|182350

>Trimin1|182350|e_gw1.437.4.1 ID=Trimin1|182350|e_gw1.437.4.1|Name=jgi.p|Trimin1|182350|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=57bp
MAGERCPQLPPDRSTASHSNSNSTSKQPQTPVIRIWGSTPAGQKACLHLH
GIYPYFY
back to top

mRNA from alignment at Contig_437:12583..12753+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18869 ID=mRNA_18869|Name=jgi.p|Trimin1|182350|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=171bp|location=Sequence derived from alignment at Contig_437:12583..12753+ (Tribonema minus UTEX_B_3156 )
ATGGCAGGAGAACGCTGCCCACAGTTGCCACCAGACCGCAGCACTGCAAG
TCATAGCAACAGCAATAGCACATCGAAGCAGCCTCAAACACCAGTCATAC
GCATATGGGGCAGCACCCCCGCGGGGCAGAAGGCTTGTTTACACCTCCAT
GGCATTTATCCGTACTTCTAT
back to top

Coding sequence (CDS) from alignment at Contig_437:12583..12753+

>mRNA_18869 ID=mRNA_18869|Name=jgi.p|Trimin1|182350|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=171bp|location=Sequence derived from alignment at Contig_437:12583..12753+ (Tribonema minus UTEX_B_3156 )
ATGGCAGGAGAACGCTGCCCACAGTTGCCACCAGACCGCAGCACTGCAAG
TCATAGCAACAGCAATAGCACATCGAAGCAGCCTCAAACACCAGTCATAC
GCATATGGGGCAGCACCCCCGCGGGGCAGAAGGCTTGTTTACACCTCCAT
GGCATTTATCCGTACTTCTAT
back to top