Trimin1|349390|estExt_Genemark1.C_Ctg_420061 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|349390
Unique NameTrimin1|349390|estExt_Genemark1.C_Ctg_420061
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length361
Homology
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BLAST of jgi.p|Trimin1|349390 vs. uniprot
Match: A0A835YSV2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSV2_9STRA)

HSP 1 Score: 482 bits (1241), Expect = 2.840e-168
Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 0 
Query:    1 MGVFGSADNINDDASDTPAPVDLVVDTVEQRCTASAVVTPGTYHTCTLLSGGQVARFGLSDDAQLGQGNTGQLRDDPSEFGASVSIVNLSAGGVQQLGELVRLAADVGNLSIVALGTERAAKAVVLVLAXXXXXXXXXXXXXXXXXXXXXXXXVAXXXXXXXXXXXGDQGGLVVLAALEEALAVPXXXXXXXXXXXXXXXXXAAALVDDAGDALRPCSDAWSVTGAHGAVHRWRNGAGHAHGVSRTVCWAHHWTNGDVNVGRNGSIDGSGYTFWHGGXXXXXXXXXXXXXXXXXXXXXXXSRVSCAFRWAHRRPDPCADRWRYCWRY 327
            MGVFGSADNINDDASDTPAPVDLVVDTVEQRCTASAVVTPGTYHTCTLLSGGQVARFGLSDDAQLGQGNTGQLRDDPSEFGASVSIVNLSAGGVQQLGELVRLAADVGNLSIVALGTERAAKAVVLVLAXXXXXXXXXXXXXXXXXXXXXXXXVAXXXXXXXXXXXGDQGGLVVLAALEEALAVPXXXXXXXXXXXXXXXXXAAALVDDAGDALRPCSDAWSVTGAHGAVHRWRNGAGHAHGVSRTVCWAHHWTNGDVNVGRNGSIDGSGYTFWHGGXXXXXXXXXXXXXXXXXXXXXXXSRVSCAFRWAHRRPDPCADRWRYCWRY
Sbjct:    1 MGVFGSADNINDDASDTPAPVDLVVDTVEQRCTASAVVTPGTYHTCTLLSGGQVARFGLSDDAQLGQGNTGQLRDDPSEFGASVSIVNLSAGGVQQLGELVRLAADVGNLSIVALGTERAAKAVVLVLAXXXXXXXXXXXXXXXXXXXXXXXXVAXXXXXXXXXXXGDQGGLVVLAALEEALAVPXXXXXXXXXXXXXXXXXAAALVDDAGDALRPCSDAWSVTGAHGAVHRWRNGAGHAHGVSRTVCWAHHWTNGDVNVGRNGSIDGSGYTFWHGGXXXXXXXXXXXXXXXXXXXXXXXSRVSCAFRWAHRRPDPCADRWRYCWRY 327
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349390 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YSV2_9STRA2.840e-168100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IISUPERFAMILY50985RCC1/BLIP-IIcoord: 38..93

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_42contigContig_42:406950..410062 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349390mRNA_5662Tribonema minus UTEX_B_3156 mRNAContig_42 406950..410062 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|349390|estExt_Genemark1.C_Ctg_420061 ID=Trimin1|349390|estExt_Genemark1.C_Ctg_420061|Name=jgi.p|Trimin1|349390|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=361bp
MGVFGSADNINDDASDTPAPVDLVVDTVEQRCTASAVVTPGTYHTCTLLS
GGQVARFGLSDDAQLGQGNTGQLRDDPSEFGASVSIVNLSAGGVQQLGEL
VRLAADVGNLSIVALGTERAAKAVVLVLAAAVAAAAVAPSVVAAAAVAAA
GGAVAVVAVLVVLVVLGDQGGLVVLAALEEALAVPAVPAAPAAPTAQVAW
AAAAALVDDAGDALRPCSDAWSVTGAHGAVHRWRNGAGHAHGVSRTVCWA
HHWTNGDVNVGRNGSIDGSGYTFWHGGTDGSVNAGRDGSFDDSGYTYWHG
SRVSCAFRWAHRRPDPCADRWRYCWRYRWHHRYCYRWRDRCRDPWRDRWR
DCWRDRWRHC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009091RCC1/BLIP-II