mRNA_4452 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|349329 vs. uniprot
Match: A0A835YUK0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUK0_9STRA) HSP 1 Score: 769 bits (1987), Expect = 1.300e-276 Identity = 495/495 (100.00%), Postives = 495/495 (100.00%), Query Frame = 3
Query: 135 MTCMKCKRVLVPFLLAFVGCEKRGAHAVVDLPPVEGKEWRPFQVDFSDNQISLSFCLLNYDEYSDEPWKYPMDGALQKVSRCREQSSRTFTVDELREHMEGRGGGRGGGEFIEPTGFIQHETRCGSTLMANMIAHVPTALMVSESLLPYNIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQSSWGRRMTRQERADVIQTVVRSLCHTSHGRSACFIKFPSAFYLSDLLTAFPTTPWIFLFRQPSEILASQLGGQWSKHDVFYEKRDDGTVVQVAEPPRKPCLMWAIDYGGAVSTEERCVRGLSVLCREALAALRSSPAGLAVDYATLPDVVADHLWTEHFGQSAAALAHDAPYLSEASRVYSKANKQPARDPLAFDAQGDAAFKESQLTPEALAALRASDMYTQYNELVAMQRWPACGXXXXXXXXXVTAQ 1619
MTCMKCKRVLVPFLLAFVGCEKRGAHAVVDLPPVEGKEWRPFQVDFSDNQISLSFCLLNYDEYSDEPWKYPMDGALQKVSRCREQSSRTFTVDELREHMEGRGGGRGGGEFIEPTGFIQHETRCGSTLMANMIAHVPTALMVSESLLPYNIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQSSWGRRMTRQERADVIQTVVRSLCHTSHGRSACFIKFPSAFYLSDLLTAFPTTPWIFLFRQPSEILASQLGGQWSKHDVFYEKRDDGTVVQVAEPPRKPCLMWAIDYGGAVSTEERCVRGLSVLCREALAALRSSPAGLAVDYATLPDVVADHLWTEHFGQSAAALAHDAPYLSEASRVYSKANKQPARDPLAFDAQGDAAFKESQLTPEALAALRASDMYTQYNELVAMQRWPACGXXXXXXXXXVTAQ
Sbjct: 1 MTCMKCKRVLVPFLLAFVGCEKRGAHAVVDLPPVEGKEWRPFQVDFSDNQISLSFCLLNYDEYSDEPWKYPMDGALQKVSRCREQSSRTFTVDELREHMEGRGGGRGGGEFIEPTGFIQHETRCGSTLMANMIAHVPTALMVSESLLPYNIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQSSWGRRMTRQERADVIQTVVRSLCHTSHGRSACFIKFPSAFYLSDLLTAFPTTPWIFLFRQPSEILASQLGGQWSKHDVFYEKRDDGTVVQVAEPPRKPCLMWAIDYGGAVSTEERCVRGLSVLCREALAALRSSPAGLAVDYATLPDVVADHLWTEHFGQSAAALAHDAPYLSEASRVYSKANKQPARDPLAFDAQGDAAFKESQLTPEALAALRASDMYTQYNELVAMQRWPACGXXXXXXXXXVTAQ 495
BLAST of jgi.p|Trimin1|349329 vs. uniprot
Match: A0A836CJX0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJX0_9STRA) HSP 1 Score: 228 bits (582), Expect = 1.560e-65 Identity = 151/483 (31.26%), Postives = 204/483 (42.24%), Query Frame = 3
Query: 216 VVDLPPVEGKEWRPFQVDFSDNQISLSFCLLNYDEYSDEPWKYPMDGALQKVSRCREQS-SRTFTVDELREHMEGRGGGRGGGEFIEPTGFIQHETRCGSTLMANMIAHVPTALMVSESLLPYNIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQSSWGRRMTRQERADVIQTVVRSLCHTSHGRSACFIKFPSAFYLSDLLTAFPTTPWIFLFRQPSEILASQLGGQWSKHDVFYEKRDDGTVVQVAEPPR-KPCLMWAIDYGGAV--STEERCVRGLSVLCREALAALRSSP-AGLAVDYATLPDVVADHLWTEHFGQSAAALAHDAPYLSEASRVYSKAN-------------KQPARDPLAFDAQGDAAFKESQLTPEALA----------ALRASDMYTQYNELVAMQRWPACG 1580
VVD P VEG+EWR V + +SFC +N +Y EPWK PMD L S CR ++ +R +++ +L H + R ++ P+GFI HETRCGSTL+ANMIAH+PTALMVSESL+PY + + + + R ++ + R+LC T H CF K P LS FP TPW+FLFR+P +++ S + G W K ++ Y + G +++ A PCL + G + E RC GL +CR+A+AA R+ P L +DY LP+ V ++LW HF Q A D PY+ EA R YSK N K RD F DA KE QLT A+ S + Y EL+AMQRW G
Sbjct: 48 VVDFPAVEGREWRAKDVYVTGEGTFVSFCNMNIADYQSEPWKTPMDQMLAVASNCRSRTHTRKYSLADLMAHQQ-----RNPERYLSPSGFIHHETRCGSTLVANMIAHIPTALMVSESLVPYKALQL------------------------------------------------------------------------------------------------KASGELRVSEVRALFRALCFTQHHHDRCFFKLPGGTMLSQFQEVFPDTPWVFLFREPLDVVVSNMRGAWGKKELLYSEAASGQLIEKASKKAIAPCLRMPLPDGVTRDDAPEMRCAGGLDKICRDAMAAARARPDLALVLDYKNLPEAVTEYLWPVHFRQGPARTERDLPYMEEAGRAYSKHNXXXXXXXXXXXXXKTMKRDKADFALGADADLKEKQLTDAIRRXXXXXXXMRDAVETSTITGSYEELLAMQRWTKDG 429
BLAST of jgi.p|Trimin1|349329 vs. uniprot
Match: D7G7Z3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z3_ECTSI) HSP 1 Score: 117 bits (292), Expect = 1.840e-24 Identity = 120/470 (25.53%), Postives = 176/470 (37.45%), Query Frame = 3
Query: 222 DLPPVEGKEWRPFQV------DFSDN---QISLSFCLLNYDEYSDEPWKYPMDGALQKVSRCREQSS--RTFTVDELREHMEGRGGGRGGGEFIEPTGFIQHETRCGSTLMANMIAHVPTALMVSESLLPYNIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQSSWGRRMTRQERADVIQTVVRSLCHTSHGRSACFIKFPSAFYLSDLLTAFPTTPWIFLFRQPSEILASQLGGQWSKHDVFYEKRDDGTVVQVAEPPRKPCLMWAIDYGG--AVSTEE---RCVRGLSVLCREALAAL-RSSPAGLAVDYATLPDVVADHLWTEHFG--QSAAALAHDAPYLSEASRVYSKANKQPARDPLAFDAQG--DAAFKESQLTPEALAALRASDMYTQYNELVAMQRW 1568
DL G+ W P + D DN + +++C L+ Y + PW + M Q+ S C + S RT+ + L+ +E EF++PTGFI HETRCGSTL ANMIA VP+ NI+ R R ++++TV R + G + F KF S+ +L + A+P T WI+LFR P E+++S L G W K E+ V P C+ A G A S E C + L L AL + SP GLAV+Y LP+V+ ++++ +H G ++ + ++ + VYSK PA ++ + Q D KE P AA A+ M Y LV +QRW
Sbjct: 108 DLRAPPGRLWIPAALSGPINHDSPDNALFNVLVAYCQLDMVAYHESPWLFAMGAFHQRTSGCMDDPSLTRTYRLSSLKRVLE-----ENPDEFMDPTGFIYHETRCGSTLSANMIAAVPS-----------NIV-------------------------------------------------------------------------------------------------HRCPDGLREELVRTVFRLMGPVQDGHTDLFFKFQSSKFLPAIEQAWPETKWIYLFRDPLEVMSSNLKGAWRKQVASAERNMTSPAVYNLGGP---CVRGAKGGGSRKAPSPESLVTTCAKHLETLNEIALTQIVEGSPNGLAVEYRQLPEVMTEYVYPKHLGMAETEEERSEFKRWMEPVTHVYSKGMATPAEGAVSKEYQQGMDLELKEQGSDPRMRAA--AATMCANYRSLVELQRW 459
BLAST of jgi.p|Trimin1|349329 vs. uniprot
Match: A0A6H5K3E4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3E4_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 2.930e-18 Identity = 75/315 (23.81%), Postives = 122/315 (38.73%), Query Frame = 3
Query: 219 VDLP-PVEGKEWRPFQVD-----------FSDNQISLSFCLLNYDEYSDEPWKYPMDGALQKVSRC-REQSSRTFTVDELREHMEGRGGGRGGGEFIEPTGFIQHETRCGSTLMANMIAHVPTALMVSESLLPYNIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQSSWGRRMTRQERADVIQTVVRSLCHTSHGRSACFIKFPSAFYLSDLLTAFPTTPWIFLFRQPSEILASQLGGQWSKHDVFYEKRD 1124
VDL P EG W+P + + + +++FCL+ EY + PWKYPM LQK S C + ++ R+F + +LR +M EF++P GF+ HETR GSTL+ANM+AHVP+ L+VSE+ + + + T ++ +++ ++ L + +G F KF + L ++ A+P W++LFR P E++ S L G + K + FY+ D
Sbjct: 141 VDLEVPREGLLWQPTTMSPLKCGEAADASADECEATITFCLMRMAEYQETPWKYPMAVMLQKKSECSKAENLRSFRLSDLRTYMREHPE-----EFLQPNGFVYHETRTGSTLVANMLAHVPSNLVVSENNMAEDPVRRCSDC----------------------------------------------------------------------------------------------TEMQKVALLREIMTLLGNGRNGHEHLFFKFQDSTTLPLMMKAYPEVGWVYLFRDPVEVMVSNLKGAYGKRERFYKGFD 356
BLAST of jgi.p|Trimin1|349329 vs. uniprot
Match: A0A6H5KRY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRY1_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 6.890e-18 Identity = 108/468 (23.08%), Postives = 180/468 (38.46%), Query Frame = 3
Query: 219 VDLPPV-EGKEWRPFQVDFSDNQIS---LSFCLLNYDEYSDEPWKYPMDGALQKVSRCREQSSRTFTV---DELREHMEGRGGGRGGGEFIEPTGFIQHETRCGSTLMANMIAHVPTALMVSESLLPYNIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQSSWGRRMTRQERADVIQTVVRSLCHTSHGRSACFIKFPSAFYLSDLLTAFPTTPWIFLFRQPSEILASQLGGQWSKHDVFYEKRDDGTVVQVAEPPRKPCLMWAIDYGGAVSTEERCVRGLSVLCREALAALRSSPA-GLAVDYATLPDVVADHLWTEHFGQSAAALAHDAPYLSEASRVYSKANKQPARDPLAFDAQG---DAAFKESQLTPEALAALRASD-----MYTQYNELVAMQRWPA 1574
+DL V +G W P V+ DN + + C +NYD YS PW PM G L S C + T + L+ +E PTGFI HETRCGSTL+ANM+A V T +M SES P+ ++ + +++ ++ ++ ++ ++ + F KF S+ + + +A+P TPWIF+FR+P E++ S+LG Q + E + +V E KP + + G E + L+ LC++A+ A +P G+ V+Y LP + + +H+G + + + S +++YSK +A A+G D+ F E T A++ + +Y Y +L ++ WPA
Sbjct: 187 LDLDDVKDGHLWIPVSVNKFDNLETDPLVKMCQVNYDSYSAAPWLLPMGGLLSIASGCADLKRDTVQIVHMSTLKRLLE-----ESTVPIPPPTGFIFHETRCGSTLVANMLASVETNVMWSESTGPWKVMHTCP----------------------------------------------------------------------------------------------KCHKEQIVPWLRVIMDAMTRSARHKHFYF-KFQSSEDIDAVTSAYPDTPWIFIFREPIEVMMSRLGAQ----RIGMEGMEKEVAARV-ERGMKPSKILSKPKLGKPPKETSAAQLLAGLCKKAIHAFEENPGKGMMVEYPHLPHGIVSTVLPDHYGVTVSEAERERMMTS--TQMYSK---------VASFAKGPTTDSKFTEDTDTKHEAASVAVQEAAQRLLYPDYYKLRSLSTWPA 538
BLAST of jgi.p|Trimin1|349329 vs. uniprot
Match: D7G7C8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7C8_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 3.520e-17 Identity = 54/130 (41.54%), Postives = 77/130 (59.23%), Query Frame = 3
Query: 219 VDLP-PVEGKEWRPFQVD-----------FSDNQISLSFCLLNYDEYSDEPWKYPMDGALQKVSRC-REQSSRTFTVDELREHMEGRGGGRGGGEFIEPTGFIQHETRCGSTLMANMIAHVPTALMVSES 569
VDL P EG W+P + + + +++FCL+ EY + PWKYPM LQK S C + ++ R+F + +LR +M EF++P GF+ HETR GSTL+ANM+AHVP+ L+VSES
Sbjct: 17 VDLEVPREGLLWQPTLMSPLKCGEAADLAADECEATITFCLMRMAEYQETPWKYPMAVMLQKKSGCSKAENLRSFHLSDLRTYMREHPE-----EFLQPNGFVYHETRTGSTLVANMLAHVPSNLVVSES 141
BLAST of jgi.p|Trimin1|349329 vs. uniprot
Match: F2UI36_SALR5 (JmjC domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UI36_SALR5) HSP 1 Score: 88.6 bits (218), Expect = 9.720e-15 Identity = 89/359 (24.79%), Postives = 135/359 (37.60%), Query Frame = 3
Query: 282 QISLSFCLLNYDEYSDEPWKYPMDGALQKVSRCREQSSRTFTVDELREHMEGRGGGRGGGEFIEPTGFIQHETRCGSTLMANMIAHVPTALMVSESLLPYNIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQSSWGRRMTRQERADVIQTVVRSLCHTSHGRSACFIKFPS--AFYLSDLLTAFPTTPWIFLFRQPSEILASQLGGQWSKHDVFYEKRDDGTVVQVAEPPRKPC-LMWAIDYGGAVSTEERCVRGLSVLCREALAALRSSPAGLAVDYATLPDVVADHLWTEHFG 1349
+ + C LN + Y+ EP+KYPM L +VS C+ ++ T T+++LR + E ++P GF+ HE+R GSTL+AN++A P L+ SES P I E+A++++ ++R++ ++ + F KF S A + AFP PW+F++R P E++AS F +K G V P L S EE C L+ LC AL AL SSP G+AV+Y LPDV+ ++ HFG
Sbjct: 81 KTKVELCRLNIEAYTAEPYKYPMFKDLLRVSNCK-GNTMTVTLNDLRFGIP---------ETLDPAGFVFHESRVGSTLIANILAADPDNLVFSESAPPPAIALHCPAPLP-----------------------------------------------------------------------------------------------EKAEMMRVLLRAMSNSVRHKRL-FFKFQSVNANAIPLYTEAFPEVPWMFVYRDPVEVMASH----------FKQKVPAGAKVPCLRAKNSPTPLHRRYIRSKNPSDEEFCAAHLATLCDSALHALDSSPNGIAVNYHDLPDVLYTRVFPVHFG 323
BLAST of jgi.p|Trimin1|349329 vs. uniprot
Match: A0A7S2SP01_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP01_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 3.960e-14 Identity = 52/131 (39.69%), Postives = 71/131 (54.20%), Query Frame = 3
Query: 207 AHAVVDLPPVEGK----EWRPFQVDFSDNQISLSFCLLNYDEYSDEPWKYPMDGALQKVSRCREQSSRTFTVDELREHMEGRGGGRGGGEFIEPTGFIQHETRCGSTLMANMIAHVPTALMVSESLLPYNI 587
A V++PPV W P V + N S++ C LNYD+Y EP PM L S CR + RT + L++ ME G ++PTGF+ HETRCGSTL+A+M+A P L+ SES P ++
Sbjct: 104 ARPAVNVPPVPRNGVPSHWTPISVG-AGNDPSVTLCKLNYDKYWREPSSLPMFKHLVGASNCRGSNYRTERLSTLKKEMEADPDGT-----LQPTGFVFHETRCGSTLVADMLASHPHHLVFSESSPPASV 228
BLAST of jgi.p|Trimin1|349329 vs. uniprot
Match: A0A7S2GE74_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GE74_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 3.920e-11 Identity = 49/143 (34.27%), Postives = 72/143 (50.35%), Query Frame = 3
Query: 159 VLVPFLLAFVGCEKRGAH--AVVDLPPVEGK----EWRPFQVDFSDNQISLSFCLLNYDEYSDEPWKYPMDGALQKVSRCREQSSRTFTVDELREHMEGRGGGRGGGEFIEPTGFIQHETRCGSTLMANMIAHVPTALMVSES 569
V+ P L GA AVV++PPV W P ++F+ +++ C L+YD Y P K PM L S+CR ++ + + L+ ME G ++PTGF+ HE+RCGSTL+A+M+ L SES
Sbjct: 72 VVEPLRLTNTNMSATGAQVPAVVNIPPVPKSGVPSHWTPIDINFA-RDPTVTLCKLDYDTYWRNPDKLPMFRDLVAASKCRGKNVKEEKLSVLKAEMEADPDGT-----LQPTGFVFHESRCGSTLVADMLGSQAHHLTFSES 208
BLAST of jgi.p|Trimin1|349329 vs. uniprot
Match: A0A7S2MH34_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MH34_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 1.500e-10 Identity = 45/128 (35.16%), Postives = 69/128 (53.91%), Query Frame = 3
Query: 216 VVDLPPVEGK----EWRPFQVDFSDNQISLSFCLLNYDEYSDEPWKYPMDGALQKVSRCREQSSRTFTVDELREHMEGRGGGRGGGEFIEPTGFIQHETRCGSTLMANMIAHVPTALMVSESLLPYNI 587
VV++PPV W P V S + +++ C L+YD Y P PM L S+C ++S++ + L++ ME G ++PTGF+ HE+RCGSTL+A+M+ L+ SES P +I
Sbjct: 74 VVNIPPVPKNGVPSHWTPVSVG-SGSDPTINLCKLDYDSYWRNPNNLPMFKDLVGKSKCSGKNSKSAKLSVLKKEMEADPDGT-----LQPTGFVFHESRCGSTLVADMLGSQAHHLVFSESAPPSSI 195 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349329 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4452 ID=mRNA_4452|Name=jgi.p|Trimin1|349329|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1622bp|location=Sequence derived from alignment at Contig_41:572253..579941+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CGGACGGCTTGCAGCTCCTACAGCCGCAGTCGTCGTGATGATAGTTCACCback to top protein sequence of jgi.p|Trimin1|349329 >Trimin1|349329|estExt_Genemark1.C_Ctg_410067 ID=Trimin1|349329|estExt_Genemark1.C_Ctg_410067|Name=jgi.p|Trimin1|349329|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=496bp MTCMKCKRVLVPFLLAFVGCEKRGAHAVVDLPPVEGKEWRPFQVDFSDNQback to top mRNA from alignment at Contig_41:572253..579941+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4452 ID=mRNA_4452|Name=jgi.p|Trimin1|349329|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7689bp|location=Sequence derived from alignment at Contig_41:572253..579941+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_41:572253..579941+ >mRNA_4452 ID=mRNA_4452|Name=jgi.p|Trimin1|349329|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1488bp|location=Sequence derived from alignment at Contig_41:572253..579941+ (Tribonema minus UTEX_B_3156 )back to top |