mRNA_4811 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|160059
Unique NamemRNA_4811
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|160059 vs. uniprot
Match: A0A835ZNW3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZNW3_9STRA)

HSP 1 Score: 889 bits (2296), Expect = 0.000e+0
Identity = 504/504 (100.00%), Postives = 504/504 (100.00%), Query Frame = 1 
Query:    1 MGTLPRSLRVLDLPRCRQFNHLLGCLPLALRELRLGAAFNQPLLHAPLPAAQGQQAAAQALCAGLAAEPLQPPPDTLVRLPETLTELHVGEAFDHPLGPLXXXXXXXXXGGCSGDSCXXXXXXXXXXXXXXXXXXVCAAYNHALYGLPDTLRSVCLGHMGDQPLLHFPARLEVLALGDSFDAALPAVLPRTLRELYLGNRFNAPLTLPPGLNLLAIGDRYPHRLDLAALPLKKLYLRVGRCSCDCCFSHALGPLPAALRILDLSTCAMXXXXXXXXXXXXXELRLDSDFDQPLPQLNACLEVLALGDAFDAALPAVLPRALRELHWGNGFNAPLTLPPRLKVLTIGISYTHRLDLAALSLKELRVGRSYANALPPLEVLTLSSGGYMRLNLTLGALPHSLETLDTTCFANFSSALGQLPESITCLNLGASFNQALEALPAALTELRIHNGTPWGNCSFNKPLGTVPPSLRTLDLDQCCXXXXXXXXXXXXXXKLRLGAAFNQPL 1512
            MGTLPRSLRVLDLPRCRQFNHLLGCLPLALRELRLGAAFNQPLLHAPLPAAQGQQAAAQALCAGLAAEPLQPPPDTLVRLPETLTELHVGEAFDHPLGPLXXXXXXXXXGGCSGDSCXXXXXXXXXXXXXXXXXXVCAAYNHALYGLPDTLRSVCLGHMGDQPLLHFPARLEVLALGDSFDAALPAVLPRTLRELYLGNRFNAPLTLPPGLNLLAIGDRYPHRLDLAALPLKKLYLRVGRCSCDCCFSHALGPLPAALRILDLSTCAMXXXXXXXXXXXXXELRLDSDFDQPLPQLNACLEVLALGDAFDAALPAVLPRALRELHWGNGFNAPLTLPPRLKVLTIGISYTHRLDLAALSLKELRVGRSYANALPPLEVLTLSSGGYMRLNLTLGALPHSLETLDTTCFANFSSALGQLPESITCLNLGASFNQALEALPAALTELRIHNGTPWGNCSFNKPLGTVPPSLRTLDLDQCCXXXXXXXXXXXXXXKLRLGAAFNQPL
Sbjct:    1 MGTLPRSLRVLDLPRCRQFNHLLGCLPLALRELRLGAAFNQPLLHAPLPAAQGQQAAAQALCAGLAAEPLQPPPDTLVRLPETLTELHVGEAFDHPLGPLXXXXXXXXXGGCSGDSCXXXXXXXXXXXXXXXXXXVCAAYNHALYGLPDTLRSVCLGHMGDQPLLHFPARLEVLALGDSFDAALPAVLPRTLRELYLGNRFNAPLTLPPGLNLLAIGDRYPHRLDLAALPLKKLYLRVGRCSCDCCFSHALGPLPAALRILDLSTCAMXXXXXXXXXXXXXELRLDSDFDQPLPQLNACLEVLALGDAFDAALPAVLPRALRELHWGNGFNAPLTLPPRLKVLTIGISYTHRLDLAALSLKELRVGRSYANALPPLEVLTLSSGGYMRLNLTLGALPHSLETLDTTCFANFSSALGQLPESITCLNLGASFNQALEALPAALTELRIHNGTPWGNCSFNKPLGTVPPSLRTLDLDQCCXXXXXXXXXXXXXXKLRLGAAFNQPL 504
[Close]
BLAST of jgi.p|Trimin1|160059 vs. uniprot
Match: A0A835ZDX0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDX0_9STRA)

HSP 1 Score: 246 bits (629), Expect = 9.580e-68
Identity = 257/624 (41.19%), Postives = 297/624 (47.60%), Query Frame = 1 
Query:    1 MGTLPRSLRVLDLPRCRQFNHLLGCLPLALRELRLGAAFNQPLL--HAPLPAAQGQQAAAQALCAGLAAEPLQPPPDTLVRLPETLTELHVGEAFDHPLGPLXXXXXXXXXGGCSGDSCXXXXXXXXXXXXXXXXXXVCAAYNHALYGLPDTLRSVCLGHMGDQPLLHFPARLEVLALGDSFDAALPAVLPRTLRELYLGNRFNAPLTLPPGLNLLAIGDRYPHRLDLAALPLKKLY--------------LRVGRCSCDCCFSHAL-------GPLPAALRILDLSTCA---------MXXXXXXXXXXXXXELRLDSDFDQPLPQ-LNACLEVL--ALGDAFDAALPAVLPRALREL---------------------------------------------HWGNGFNAPLTLPPRLKVLTIGISY-------THRLDLAALSLKELRV-GRSYANALPPL-------------------------------EVLTLSSG-GYMRLNLTLGALPHSLETLDTTCFANFSSALGQLPESITCLNLGASFNQALEALPAALTELRIHNGTPWGNCSFNKPLGTVPPSLRTLDLDQCCXXXXXXXXXXXXXXKLRLGAAFNQPL 1512
            +G LP SLRVLDL  C QF            ELRLG AF  PLL  HA LPA QGQQAAA AL A L AEP+QPPPD LVRLPETLT LHVG +FDHPLGPL XXXXXXXXG  +G S XXXXXXXXXXXXX      C  +NHAL  LPD LR + LGH  +       A  EVL LG +F AALPA LPR              LTLP  L  L IGD Y H+LDLAA     +               LR  R S +      +         +PA +    L+T           M             EL           Q L++   VL   +G A+ AA   +LP  +R L                                              W +   A + LPP +    +  ++       T  + +A  SL  LR+ G     A  PL                               E L LSS  G+   + TLGALPHSL TLDT  F +F SALG LPE +T L+LG  FN AL ALPA L ELRI  G   G  SFN+PLG +PP L+ LDL +C XXXXXXXXXXXXXX+LRLG AFN PL
Sbjct:  275 LGALPPSLRVLDLRACNQFXXXXXXXXXXXXELRLGDAFRHPLLLQHASLPAVQGQQAAAPALEAELPAEPVQPPPDALVRLPETLTVLHVGRSFDHPLGPLPXXXXXXXXGRIAG-SXXXXXXXXXXXXXXVLDLDACGMFNHALDDLPDALRELRLGHDFNXXXXXXXAHREVLVLGTTFGAALPATLPRXXXXXXXXXXXXXXLTLPAALEFLIIGDSYTHQLDLAAFANDSVQNVRYAERCAERPGTLRAKRASLELLREVQVVVKIIVRKEMPAVVFRALLTTRTVKHLVVHGTMPRVHVMPDTIGPLELXXXXXXXXXXXQHLHSLTLVLPDGMGSAYAAAYLTMLPETVRSLALDFMYCQGTTRLTNLALPAHLRTPRLTHLRELPALPASLTSITLDWCS-LGAIVQLPPSVTEANLNETFCRAGSFLTTSIAVAGASLCRLRLMGLQPTWATQPLPQDLTDLKLHNTPYGWAQWTPVALTVLPQSLETLMLSSSLGFP--DFTLGALPHSLRTLDTAHFTSFKSALGPLPERLTHLSLGREFNHALGALPAGLIELRIR-GDSLGCASFNQPLGALPPLLQVLDLRRCNXXXXXXXXXXXXXXELRLGVAFNHPL 893
[Close]
BLAST of jgi.p|Trimin1|160059 vs. uniprot
Match: A0A835ZH80_9STRA (Sulfhydryl oxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH80_9STRA)

HSP 1 Score: 222 bits (565), Expect = 2.040e-60
Identity = 136/258 (52.71%), Postives = 151/258 (58.53%), Query Frame = 1 
Query:    1 MGTLPRSLRVLDLPRCRQFNHLLGCLPLALRELRLGAAFNQPLL---HAPLPAAQGQQAAAQALCAGLAAEPLQPPPDTLVRLPETLTELHVGEAFDHPLGPLXXXXXXXXXGGCSGDSCXXXXXXXXXXXXXXXXXXVCAAYNHALYGLPDTLRSVCLGHMGDQPLLHFPARLEVLALGDSFDAALPAVLPRTLRELYLGNRFNAPLTLPPGLNLLAIGDRYPHRLDLAALPLKKLYLRVGRCSCDCCFSHALGPLP 765
            +GTLP SL+VLDL +C Q            R+LRLGA FNQPLL   HA LPA QGQQAAA AL AG AAEPLQP P+ LVRLPETLT LHVG AFDHPLGPL         G  S D                        ++HA+                       PARLEVL LGD+FDAALPA LPRTLREL+LG+RFNAPL LPP L +L IGD Y HRLDLAALPLKKL +  G       ++HAL  LP
Sbjct:  568 LGTLPPSLQVLDLHQCYQXXXXXXXXXXXXRQLRLGAVFNQPLLPLQHASLPAVQGQQAAAPALGAGAAAEPLQPVPNVLVRLPETLTMLHVGNAFDHPLGPLPEGLTELRVGSISRDG----------------------RFSHAIXXXXXXXXXXXXXXXXXXXXSRIPARLEVLVLGDAFDAALPAALPRTLRELHLGHRFNAPLALPPALEVLTIGDGYTHRLDLAALPLKKLCVSHG-------YAHALPRLP 796
[Close]
BLAST of jgi.p|Trimin1|160059 vs. uniprot
Match: A0A835ZCN0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCN0_9STRA)

HSP 1 Score: 187 bits (475), Expect = 2.740e-50
Identity = 152/309 (49.19%), Postives = 172/309 (55.66%), Query Frame = 1 
Query:  502 PARLEVLALGDS--FDAALPAVLPRTLRELYLGNRFNAPLTLPPGLNLLAIGDRYPHRLDL-----AALPLKKLYLRVGRCSCDCCFSHALGPLPAALRILDLSTCAMXXXXXXXXXXXXXELRLDSDFDQPLPQLNACLEVLALGDAFDAALPAVLPRALRELHWGNGFNAPLTLPPRLKVLTIGISYTHRLDLAALSLKELRVGRSYANALPPLEVLTLSSGGYMRLNLTLGALPHSLETLDTTCFANFSSALGQLPESITCLNLGASFNQALEALPAALTELRIHNGTPWGNCSFNKPLGTVPPSL 1407
            P  L VL L D   F+ AL   LPRTLR+L LG  FN   TL P   LL                   LP   + LR    S DCCFS ALGPLPAALRILDL+ C  XXXXXXXXXXXXXELRL   FDQPLPQL A LEV ALG A  AALPA LPR    L  G+ FNA L LPP L+ L IG SYTHRLDLAAL LK L VGRSYA+ALPPL    L               P SL+ L       F+ +LG+LP ++  L LGA+F+  L  LP   + L +         S  +P+   P +L
Sbjct:    2 PPSLRVLDLNDREFFNHALGR-LPRTLRKLRLGAAFNH--TLLPQAALLXXXXXXXXXXXXXXXXXGPLPEGLVELRAHSFSRDCCFSRALGPLPAALRILDLARCTXXXXXXXXXXXXXXELRLGGAFDQPLPQLPASLEVQALGTACGAALPATLPRXXXXLRIGHRFNAXLALPPTLEFLIIGNSYTHRLDLAALPLKTLHVGRSYAHALPPLPGTPL---------------PPSLQVLGLHQCHRFNHSLGRLPCTLRKLRLGAAFSHPL--LPQHASLLAVQGQQALDAESAAEPVQPAPDAL 290
[Close]
BLAST of jgi.p|Trimin1|160059 vs. uniprot
Match: A0A835ZIN3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIN3_9STRA)

HSP 1 Score: 143 bits (361), Expect = 3.460e-34
Identity = 98/171 (57.31%), Postives = 111/171 (64.91%), Query Frame = 1 
Query:  619 LPPGLNLLAIGDRYPHRLDLAALPLKKLYLRVGRCSCD---CCFSHALGPLPAALRILDLSTCAMXXXXXXXXXXXXXELRLDSDFDQPLPQLNACLEVLALGDAFDAALPAVLPRALRELHWGNGFNAPLTLPPRLKVLTIGISYTHRLDLAALSLKELRVGRSYANALP 1122
            LP  L  L++   + H L   ALP     LR+         C F   LGPLP +L +++L+ C  XXXXXXXXXXXXX   L   FDQPLPQL A LEVL LG AF AALPA LPR  RELH G+ FNAPL LPP L+VL IG  YTHRLDLAAL L+ LRVG SY +ALP
Sbjct:  250 LPESLTQLSLSSSFNHALG--ALPRSLQELRITNTHSQWGTCVFDRPLGPLPPSLHVVNLAACVTXXXXXXXXXXXXXXXXLGPAFDQPLPQLPAGLEVLVLGAAFGAALPAALPRXXRELHMGHHFNAPLALPPVLEVLIIGNRYTHRLDLAALPLRVLRVGGSYRHALP 418
[Close]
BLAST of jgi.p|Trimin1|160059 vs. uniprot
Match: A0A835ZB84_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB84_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.180e-29
Identity = 102/177 (57.63%), Postives = 109/177 (61.58%), Query Frame = 1 
Query:   19 SLRVLDLPRCRQFNHLLGCLPLALRELRLGAAFNQPLL--HAPLPAAQGQQAAAQALCAGLAAEPLQPPPDTLVRLPETLTELHVGEAFDHPLGPLXXXXXXXXXGGCSGDSCXXXXXXXXXXXXXXXXXXVCAAYNHALYGLPDTLRSVCLGHMGDQPLLHFPARLEVLALGDSFD 543
            SLRVLDL +C +FN               GA FNQPLL  HA LPA  GQQAA QAL A LAA+PLQP P  LVRLPETL  LH+GEAFDHPLGPL         G C  D   XXXXXXXXXXXXXXXXXVCAAYNHAL  LPD LR + +    DQPL             D+FD
Sbjct:  279 SLRVLDLHQCCRFNXXXXXXXXXXXXXXXGAVFNQPLLLRHASLPAVHGQQAATQALGARLAADPLQPTPGALVRLPETLAVLHIGEAFDHPLGPLPKSLTQLRVGRCCCDCRFXXXXXXXXXXXXXXXXXVCAAYNHALNRLPDALRELRVFGAFDQPLPXXXXXXXXXXXXDAFD 455
[Close]
BLAST of jgi.p|Trimin1|160059 vs. uniprot
Match: A0A835ZAG2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAG2_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.650e-21
Identity = 81/151 (53.64%), Postives = 86/151 (56.95%), Query Frame = 1 
Query:  676 LAALPLKKLYLRVGRCSCDCCFSHALGPLPAALRILDLSTCAMXXXXXXXXXXXXXELRLDSDFDQPLPQLNACLEVLALGDAFDAALPAVLPRALRELHWGNGFNAPLTLPPRLKVLTIGISYTHRLDLAALSLKELRVGRSYANALPPL 1128
            L  LP     L+VG    D CF         ALRILDL+T A   XXXXXXXXXXXELRL   FDQPLPQ                ALPA LP               LTL PRL+VLT+G SYTHRLDLAALSLKEL VGR Y +ALPPL
Sbjct:  672 LGPLPEGLAELQVGSFGRDGCFXXXXXXXXXALRILDLTTRAACDXXXXXXXXXXXELRLGGAFDQPLPQXXXXXXXXXXXXXXXXALPAALPCXXXXXXXXXXXXXXLTLTPRLEVLTVGASYTHRLDLAALSLKELHVGRKYVHALPPL 822
[Close]
BLAST of jgi.p|Trimin1|160059 vs. uniprot
Match: A0A836CJW6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJW6_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.750e-19
Identity = 126/380 (33.16%), Postives = 141/380 (37.11%), Query Frame = 1 
Query:    1 MGTLPRSLRVLDLPRCRQFNHLLGCLPLALRELRLGAAFNQPLLHAPLPAAQGQQAAAQALCAGLAAEPLQPPPDTLVRLPETLTELHVGE-AFDHPLGPLXXXXXXXXXGGCSGDSCXXXXXXXXXXXXXXXXXXVCAAYNHALYGLPDTLRSVCLGHMGDQPLLHFPARLEVLALGDSFDAALPAVLPRTLRELYLGNRFNAPLTLPPGLNLLAIGDRYPHRLDLAALPLKKL--YLRVGRCSCDCCFSHALGPLPAALRILDLSTCAMXXXXXXXXXXXXXELRLDSDFDQPLPQLNACLEVLALGDAFDAALPAVLPRALRELHWGNGFNAPLTLPPRLKVLTIGISYTHRLDL-AALSLKELRVGRSYANALPPL 1128
            +G LPRSLR LDL     FN+ LG LP +L  L LGA                                               +    G+ AFD PLG L           CS                          +             + LG   + PL   P R          +AAL AV               AP  LP  L LL IG+ + HRL L    L++L  Y   GRC   C F HALGPLPAALR LDL+ C  XXXXXXXXXXXXXELRL   FDQ                 F AAL                                   YTH LDL AALSL EL VGRSYA+ALPPL
Sbjct:  328 LGALPRSLRTLDLSHYDNFNNALGRLPASLTSLSLGAKXXXXXXXXXX----------------------------XXXXXRIRSRSESGDCAFDRPLGALPPALRVLDLQQCS-------------------------VFXXXXXXXXXXXXELRLGAAYNWPLAAAPQRAAPPPAAPRQEAALDAVAXXXXXXXXXXXXXAAPAQLPETLTLLHIGEDFTHRLGLLPQGLEELRAYSSAGRC---CWFRHALGPLPAALRALDLAACXXXXXXXXXXXXXXXELRLGCAFDQXXXXXXXXXXXXXXXSGFGAALXRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---YTHWLDLSAALSLAELHVGRSYAHALPPL 648
[Close]
BLAST of jgi.p|Trimin1|160059 vs. uniprot
Match: A0A835ZDY6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDY6_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.620e-17
Identity = 80/163 (49.08%), Postives = 85/163 (52.15%), Query Frame = 1 
Query:   22 LRVLDLPRCRQFNHLLGCLPLALRELRLGAAFNQPLL--HAPLPAAQGQQAAAQALCAGLAAEPLQPPPDTLVRLPETLTELHVGEAFDHPLGPLXXXXXXXXXGGCSG----DSCXXXXXXXXXXXXXXXXXXVCAAYNHALYGLPDTLRSVCLGHMGDQPL 492
            LRVLD+  C ++N  LG         RLG AFNQPLL  H PLPA QGQQAA  A  AGLA +PLQ  PD  V LPE LT LHVGEAFDHPLG L XXXXXXX G  S     D C                  VCAAY+              LG    QPL
Sbjct:  364 LRVLDVNDC-EYNLPLGRXXXXXXXXRLGTAFNQPLLPLHTPLPAMQGQQAALPAHDAGLAEDPLQSVPDMTVLLPEALTVLHVGEAFDHPLGRLPXXXXXXXVGDFSRHGHRDCCFSHTLGPLPAALRILDLGVCAAYHXXXXXXXXXXXXXXLGGAFHQPL 525
[Close]
BLAST of jgi.p|Trimin1|160059 vs. uniprot
Match: A0A835ZAL1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL1_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.620e-10
Identity = 92/232 (39.66%), Postives = 100/232 (43.10%), Query Frame = 1 
Query:  439 LPDTLRSVCLGHMGDQPLLHFPARLEVLALGD-SFDAALPAVLPRTLRELYLGNRFNAPLTLPPGLNLLAIGDRYPHRLDLAALPLKKLYLRVGRCSCDCCFSHALGPLPAALRILDLSTCAMXXXXXXXXXXXXXELRLDSDFDQPLPQLNACLEVLALGDAFDAALPAVLPRALRELHWGNGFNAPLTLPPRLKVLTIGIS-YTHRLDLAALSLKELRVGRSYANALPPL 1128
            L D +R  C     DQPL   P  L VL L   +                 LG  F+ PL  PP     A       R   AAL         G    DC F+ ALG LPAA           XXXXXXXXXXXXXELR+   FD+PL QL A LEVL LG AF AALPA L                                YTHRLDLAAL  K L VG SYA+ + PL
Sbjct:  113 LSDGVRGTCAF---DQPLGALPPLLRVLDLDRCARXXXXXXXXXXXXXXXRLGAAFDRPL--PP--RRAAPAPAAQQRRHAAALDAPLAPPDAGG---DCAFARALGALPAAXXXXXXXXXXXXXXXXXXXXXXXXELRVGRAFDRPLAQLPARLEVLGLGQAFGAALPAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGYTHRLDLAALPRKTLCVGCSYAHEVTPL 334
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|160059 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A835ZNW3_9STRA0.000e+0100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZDX0_9STRA9.580e-6841.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZH80_9STRA2.040e-6052.71Sulfhydryl oxidase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A835ZCN0_9STRA2.740e-5049.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZIN3_9STRA3.460e-3457.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZB84_9STRA1.180e-2957.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZAG2_9STRA1.650e-2153.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJW6_9STRA1.750e-1933.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZDY6_9STRA1.620e-1749.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZAL1_9STRA1.620e-1039.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_11contigContig_11:1114536..1125110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|160059|e_gw1.11.84.1
Hectar predicted targeting categoryother localisation
TranscriptId160381
TrackFilteredModels1
ProteinId160059
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160059gene_4811Tribonema minus UTEX_B_3156 geneContig_11 1114536..1125110 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4811_1exon_4811_1Tribonema minus UTEX_B_3156 exonContig_11 1114536..1115240 +
exon_4811_2exon_4811_2Tribonema minus UTEX_B_3156 exonContig_11 1120068..1120486 +
exon_4811_3exon_4811_3Tribonema minus UTEX_B_3156 exonContig_11 1124723..1125110 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4811CDS_4811Tribonema minus UTEX_B_3156 CDSContig_11 1114536..1115240 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160059Trimin1|160059|e_gw1.11.84.1Tribonema minus UTEX_B_3156 polypeptideContig_11 1114536..1125110 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4811 ID=mRNA_4811|Name=jgi.p|Trimin1|160059|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1512bp|location=Sequence derived from alignment at Contig_11:1114536..1125110+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTACGCTCCCGCGGTCGCTGCGGGTGCTCGATTTGCCTCGGTGCCG
CCAATTCAATCACCTGCTGGGCTGCCTGCCCCTTGCGCTCCGCGAGCTGC
GCCTCGGCGCCGCCTTCAACCAGCCGCTGCTGCACGCACCGCTCCCCGCC
GCGCAGGGTCAGCAGGCAGCGGCGCAAGCTCTCTGTGCCGGGCTGGCTGC
GGAGCCACTGCAGCCACCGCCCGACACGCTTGTGCGGCTGCCTGAGACCC
TCACAGAGCTGCATGTGGGCGAGGCCTTTGACCACCCCCTGGGGCCACTC
CCTGAGAGCCTGACGGAGCTGCAGGTGGGCGGGTGCAGCGGCGACAGCTG
CTTCAGCCACGCCCTGGGCCCACTGCCTGCGGCGCTGCGCATACTAGACC
TGGGGGTGTGCGCCGCATACAACCATGCGCTCTATGGCCTGCCGGACACG
CTACGCAGTGTTTGCCTTGGCCACATGGGTGACCAGCCATTGCTGCATTT
TCCTGCGCGACTCGAGGTGTTGGCACTGGGGGATTCGTTTGATGCGGCTC
TGCCAGCAGTGCTGCCGCGCACGCTGCGCGAGCTGTACCTAGGGAACCGC
TTCAACGCACCACTGACGCTGCCGCCGGGGCTGAATTTGCTGGCCATCGG
CGACCGGTACCCGCACCGGCTTGACCTGGCGGCGTTGCCGCTGAAGAAGC
TATACCTGCGGGTGGGCAGGTGCAGCTGCGACTGCTGCTTCAGCCACGCC
CTGGGGCCACTGCCTGCTGCACTGCGCATACTAGACCTGTCGACATGTGC
CATGTACAATCATGCGCTCAGTAGCCTGCCAGACACGCTACGCGAGCTGC
GCCTTGACAGCGACTTTGACCAGCCACTGCCGCAGCTCAATGCGTGCCTC
GAGGTGCTGGCGCTGGGGGATGCATTCGATGCGGCTTTGCCAGCGGTGCT
GCCGCGTGCGCTGCGCGAGCTGCACTGGGGGAACGGCTTCAACGCACCGC
TGACGCTGCCGCCAAGGCTGAAGGTGCTGACCATCGGCATCAGCTACACG
CATCGGCTTGACCTGGCGGCGCTTTCGCTGAAGGAGCTGCGCGTCGGCCG
CAGCTACGCGAATGCGCTGCCGCCCCTGGAGGTGCTGACGCTGTCAAGCG
GCGGCTACATGCGCCTAAACCTCACGCTCGGCGCGCTGCCACACAGCCTT
GAAACGCTGGATACAACGTGCTTCGCCAACTTCAGCAGCGCCCTGGGCCA
GCTGCCCGAGAGCATTACCTGCCTAAACCTCGGCGCGAGCTTCAACCAAG
CCCTCGAGGCGCTACCAGCTGCCCTGACGGAGCTGCGCATCCACAACGGG
ACCCCGTGGGGCAATTGCTCCTTCAACAAGCCCCTTGGCACCGTCCCGCC
GTCGCTGCGGACACTTGATTTAGACCAGTGCTGCCGCTTCAATCACCTAC
TCGGCCGCCTGCCGCGCACGCTCCGCAAACTGCGCCTCGGCGCCGCCTTC
AACCAACCGCTG
back to top

protein sequence of jgi.p|Trimin1|160059

>Trimin1|160059|e_gw1.11.84.1 ID=Trimin1|160059|e_gw1.11.84.1|Name=jgi.p|Trimin1|160059|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=504bp
MGTLPRSLRVLDLPRCRQFNHLLGCLPLALRELRLGAAFNQPLLHAPLPA
AQGQQAAAQALCAGLAAEPLQPPPDTLVRLPETLTELHVGEAFDHPLGPL
PESLTELQVGGCSGDSCFSHALGPLPAALRILDLGVCAAYNHALYGLPDT
LRSVCLGHMGDQPLLHFPARLEVLALGDSFDAALPAVLPRTLRELYLGNR
FNAPLTLPPGLNLLAIGDRYPHRLDLAALPLKKLYLRVGRCSCDCCFSHA
LGPLPAALRILDLSTCAMYNHALSSLPDTLRELRLDSDFDQPLPQLNACL
EVLALGDAFDAALPAVLPRALRELHWGNGFNAPLTLPPRLKVLTIGISYT
HRLDLAALSLKELRVGRSYANALPPLEVLTLSSGGYMRLNLTLGALPHSL
ETLDTTCFANFSSALGQLPESITCLNLGASFNQALEALPAALTELRIHNG
TPWGNCSFNKPLGTVPPSLRTLDLDQCCRFNHLLGRLPRTLRKLRLGAAF
NQPL
back to top

mRNA from alignment at Contig_11:1114536..1125110+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4811 ID=mRNA_4811|Name=jgi.p|Trimin1|160059|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=10575bp|location=Sequence derived from alignment at Contig_11:1114536..1125110+ (Tribonema minus UTEX_B_3156 )
ATGGGTACGCTCCCGCGGTCGCTGCGGGTGCTCGATTTGCCTCGGTGCCG
CCAATTCAATCACCTGCTGGGCTGCCTGCCCCTTGCGCTCCGCGAGCTGC
GCCTCGGCGCCGCCTTCAACCAGCCGCTGCTGCACGCACCGCTCCCCGCC
GCGCAGGGTCAGCAGGCAGCGGCGCAAGCTCTCTGTGCCGGGCTGGCTGC
GGAGCCACTGCAGCCACCGCCCGACACGCTTGTGCGGCTGCCTGAGACCC
TCACAGAGCTGCATGTGGGCGAGGCCTTTGACCACCCCCTGGGGCCACTC
CCTGAGAGCCTGACGGAGCTGCAGGTGGGCGGGTGCAGCGGCGACAGCTG
CTTCAGCCACGCCCTGGGCCCACTGCCTGCGGCGCTGCGCATACTAGACC
TGGGGGTGTGCGCCGCATACAACCATGCGCTCTATGGCCTGCCGGACACG
CTACGCAGTGTTTGCCTTGGCCACATGGGTGACCAGCCATTGCTGCATTT
TCCTGCGCGACTCGAGGTGTTGGCACTGGGGGATTCGTTTGATGCGGCTC
TGCCAGCAGTGCTGCCGCGCACGCTGCGCGAGCTGTACCTAGGGAACCGC
TTCAACGCACCACTGACGCTGCCGCCGGGGCTGAATTTGCTGGCCATCGG
CGACCGGTACCCGCACCGGCTTGACCTGGCGGCGTTGCCGCTGAAGAAGC
TATACGTCAGCCACAGATACCCGTATGCGCTGCCGCCGCTGCCCGGGACG
CTCGTCATCAGGCGCTGAGCCGGGCGTCCACAGGAGGACACGAAGCGCAG
GCCGTTGCTTCAACGGCGTACTGGGGGCGGGGCTTGTTGGGCTGCCACTT
TGCTGCAGTGGTGCGCGTCCTGCAGCGTGTGCGACAGCGCTCAGCAAGAG
CAACACGCAGAGCATTGCGGTGAGCGGCTCAGGTGCGCTTGTTGAGCGAG
GCGTGCGGTGCTGACTTGTGTCAAAGCTCGAGTTGTTGGCTGATTGATTG
CAGGCTCACAAGCAGTAGGTCCACTGGACAAACGCAGAGCAGTGCAGTGA
TGTGATACGCCTTGTGGAGCAAGCGCAACCCACAACGACGAAGACTTGTA
TGGTGGCGCCATGAAATGCACGCATGCAACATCAGATCCATATTGTGTTT
GACTGCTGCGCACGCCCTCTTCTACGTCTACCTGCGTCATTTGCGCTGCC
TGCTGGCACTTGGCAGTGCATCAGATGTGCATTCAGTGGCTGTGCCTCAA
CAAGTGCTGCTTGGCATATTGTAGCAATGGCAATTTTGCTGTGTAGCAAG
TGGCTTCTAGCAACATCAGCATGTTGCGGTACATGCTCCCAACAATTGAC
ATTAATCCTCATGTATGCGGCCTGGTTGACTCTTGCATACGAGCAAGACG
AGGCAATTGATCAACAAGTTGTTCCAGCCTGCGTATGCTGTGGGTGCGCC
TGCTGCTTGCTGCCACCTGCTGCTTTGACCTTGCTCTCTGAAACTGAAGC
AGGACAGAAAAATTTGCACTGCTGATGGGCCTAACGGCACTTGCAGTGGT
GTCACATGGTGCTGCAGGTGTGTTGATGCCTGCCTATGGTTCTTTAGTGC
TGCCAAATCATATATTGCAATGCATGCATCTGTGCGTGTTCAGGGCATTT
ATTGATGTGTTTGCGCTACTACGCCATGATGCTAGGGGAGTGAAGCCATA
TGCTTATAAGCTGCAGCGGCATGTATGCGCGCGTGCACCACCCTCATACG
CCATCATGTACGGATGTTGGACAGTTTATACGCAGTATGTCGATGTATGC
GTCATACGGATGTACGCCATACATGATTGGCGCATGTACGTTTTGTCGCA
ACCCTAGCAGAACGTGTGCAATTGAAGCAGCACCAGTCTGCCACATTATG
GTTCCGCAATGGTGAGTGTTTATTGTGTTGCGAAGCATTCGCGCACAGCA
CTGCAATGCGCATTTACTATGCACACTCCATGTTACCAATACAAGAGTGA
TTGATTGTTTGCAGAAGCAGAATGCTTTGTAGGGCAACATCCATTCCCTT
GTGCATCACATTGGCCCCTGCCAGCATGTAGCACATCCGCACCATTGCTC
CGAGACCAGAAATCAACACATGGTGATCAGTGACATGAAAATCAAACATG
CGATGAAAACTCAGCACTTGCTGCACAACAGCAAGTGCACCTTGCAAGCC
AACATGCAATACAAGAGGAAGCCACGCAGTTCAGTGTCACACGGTGCTTT
CGCCCCAAGCAAGCACCGCGCGCCGCGCGGCCGCTCACATCCACCAGGCA
TATGGTAGGCTGTGACGGCCGGAAGCTTGCGTGCGCGCTGCAGACAATCC
CATTATGCCGCGGACTGTATGTGTACCACTGCTGCTAGCTGCCTGCAAGC
AATGCGTGTGCGCACTGCATCCAGGCATCATGGGCGGCGCTGCAAACGTA
CGCCGCCGCTGCATGATGCGTCGTTGCCGGCTTCATGTTGAATGGTCAAA
GCACTACTGCACACCATATCCAGCTGTATGTATATGGCCTGTGGGAACTC
AGAATACAACAGCTCGCCGTAGACATCAGTGCAGGCGCACAGTACTTCCA
GTCCAGCAGCTGCAGCAGACCGCATCTCCTGCGCTGGCTGCACCTGCGGC
AGGAGCACCTCACTGCGCAGCAGCTTTCATGCTTCCTCTGCGCATCCACA
TGCTCGTGTTGCGTTGTGGTCCTTTATTGTCATCAATTCCCAGCGCTTGA
TGGTCTCCCTGGCATCAAGCCGCAGCTTGGCAACTGCAGAAGCGGCCGCG
CCGCACGGTAACACCCAGTCGTGAAGAGCTGCGCGCGCCTGCTCTTTCAC
ACTGGTGCATATCAAATTGCAGAAAAATCTGAAGCTTTGCTAACATCTGC
TGCCTGCAAGATGCGCCAGCAAGAACGCTAGCCCCATTGCCGTGACTGCA
AGTGAAGGCCTTGAGTGGCAAATCCGCCGCCAGGGCTGCCATGTACTTAG
TGCAACAAGGAGTACTTATTGCAGGTCCTCCTTTGGCGATTCTTCAAGTT
GGCTGTAAGTGCTGTGTCAAGTGCCCACATTATCTTCAAACTCATCAGTC
CTTCAACAGTGCATGGCCCTTGGCAGTGGCATCGGGGGGACGCTGTTGAC
ATAGGTCAAATTCTGCTGTGAAGGTGAAGAAACAATGAAAGTGCAGAAAG
AATAAGCGAGGACAAGCTGCCGTGAAGCAAGCTCAGGACTTTCCGCTGCT
CCTCGCACGCTCGTGCCTATGTACTTCATTCTGTTAGCATACCTCTACTC
GCGCTTTGAAGGTGGCATCCTCTCTTTTCAGAAACACGGCATTGCACAAC
ATAGCGAAGCATGCTGCATCATGCACGAACCATGGGAAGAGGAGTTGCTG
CCTGCCACAACTACTCGGGACGTGCAAGAAATGGCACTCCTGTAAAAGGC
TATGACATTTACATTGAGGGAAAAAGCAATTGCCGCATGCACCACCACTG
ACATCTCCGTTGACTGCAAAGGATCCAGAATGAGGCAATCAGCATGCCAT
TCGTAATGATCATCTGAAACAGCAACACGCAGCGCGGCATAGACTGCTGC
ACAGTCACTATCAATCAACGTAGCATTGCATGGCCATGAAATCCCCTGCC
CGTAGATGCTTTGTGCACACAATTGTCGTTGCTGTTGCTCCATATGTACC
AGAAACCGCTTGCGCGCATACCTGCCGAACGCTCCAGTACACTTGGAAGA
GGAAGGAGCGTCCCAGTCCTGCTGCCAGAGTGGCAGTGTCAGAATTGTTG
TCTGAGTACTGGCAGAGCCAGCTCCTCCGAGTTGTTGTCTGATCTGATGC
TTCATTGTGATTGCTTGCCAAGTGGCCGTCAATGCGGTGAACCCCAATCA
ATCACAGGTGAATGTGGTGGGTAGCACTCTGCCACCTTGCCGATGGCTTT
CCTTGGCTACTTCCGCGTGCGGTTGATCAACTTCATATTTTCGACTTGAA
CCTCTCGAGAGAAAAAGATCGACAGCCAGTGCAAGGTCCATCGTAGTGCA
ACCATGGAACAGCGGTACAGCAAAACAGTCTAGATTCAAGAAACAGCAAG
CAGTCAGCATGCTTACATCGAAGCGGGGTAGACGTCACAATGGTTCCAAC
AGTGAACGGGACCTGACGCTGGAGGGAAGTCCTACGGTGGAGATAGTCAA
GATCCTAGCATCACTGTCGCTGCTGCCCAAATCCGCATGGGGCCTCAGCA
AAGAGCTGCATCGGGAAGTGAAGGTGGCGGTGAAGATCATCGTCCGCACA
GATATGCCTGCCGCCGTCTTTCGCGCACTGCTGACCACCAGGACAGTCAA
GCACCTGGTTGTCCACGGTGCAATGCCGCGAGTACACGTCGTGCCGGACA
CAATCGAGGCTCTGGAGCTGCACGGAGTTCGTGGCAGGGTTAAGGACATG
CCGCAGCATCTGCACTCCCTGACGCTCGTGCTGCCGCAAGGAATGGGCAG
CGCATACGCAGCGGCGTACCTCAGCATGCTGCCAGAGACTGTGCACAGCC
TGGCTCTCGACGCCAGTCAGTGTCAGGCAAATAACAGACTGACGGACCTT
ACACTGCCCGCCCGCTTGCAAACGCTGAGATTGACGCACCTGCGCCAGCT
CCCCGCTCTGCCCACCTCTCTCACCAGCATCACGTTGGAGTCGTGCTCTC
TTGAGGATATTGTACAGCTGCCGCCATCACTGACGGAAGCCAACCTCAGT
GAAACCTCGTGCTGTACCGAGCACTTCACCAGCACAAACGTTGCAGTCAC
GGGCCCGTCGCTCCGCCGCTTGCGGCTGGCGGGGCTGCAACCTACATGGG
CAGTTCAGCCACTGCCGCAGGACCTTACCGACCTACACATCCACTTCCAA
TGTGACAGCTGGGGACGAGAGAAACGAGAGATTCCCGTGGCCCTGTCAGT
GCTGGCGCAGAGCCTGGAGGTGCTGACGCTCTCAAGCGGCTCTAGACGCC
TAAATCTCAGGCTCGGCGCGCTGCCGCACAGCCTTAGAACGCTTGACGCA
AGCCGCTGCGCCAACTTCAACAACGCCCTGGGCCCGCTGCCCGAGAGCCT
TACCTGCCTGAGCCTTGGCGGGAGCTTCAACCACGCTTTTGGGACGATAC
CATCTGGCCTGGTGGAGCTGCGCATCCACACGGGGACCCCGTGGGGCATC
TGTGACTTCAACCAGCCCCTCGGCAACCTCCCGCCGTCGCTGCGGATGCT
TGATTTGCATCAGTGCTACCGCTTCAATCACCCGCTGGGCCGCCTGCCGC
ACACGCTCCGCAAACTGCGCCTCGGCGTCGCCTTCAACCACCCGCTGTTG
CCGCAGCATGCATCGCTCCCCGCCGTGCAGGGCCAGCCGCAAGCACTGGA
TGCCGGGCTGGCGGAGGACTGCTGCAGCCAGCGCCTGACGTGCTTGCGCG
GCTGCCCAAGACCCTCACTGTACTGGACGTTGGCGAGGCCTTTGACCACC
CCCTGGGGCCGCTGCCCGAGAGCCTGACGGAGCTGCGGGTGGGCAGGTGC
AGCTGCGACTGCTGCTTCAGCCACGCCCTGGGGCCACTGCCTGCTGCACT
GCGCATACTAGACCTGTCGACATGTGCCATGTACAATCATGCGCTCAGTA
GCCTGCCAGACACGCTACGCGAGCTGCGCCTTGACAGCGACTTTGACCAG
CCACTGCCGCAGCTCAATGCGTGCCTCGAGGTGCTGGCGCTGGGGGATGC
ATTCGATGCGGCTTTGCCAGCGGTGCTGCCGCGTGCGCTGCGCGAGCTGC
ACTGGGGGAACGGCTTCAACGCACCGCTGACGCTGCCGCCAAGGCTGAAG
GTGCTGACCATCGGCATCAGCTACACGCATCGGCTTGACCTGGCGGCGCT
TTCGCTGAAGGAGCTGCGCGTCGGCCGCAGCTACGCGAATGCGCTGCCGC
CGTTGCCAGGGACGCATGTCACTCGGGCGCACTGGTAGGGCGCAATTGCA
CTACGATATCGCGTGCAGGGAGAGCTTTTTGCGGGCCAGCCGCTGTGCTG
CAGCGTTGTGCGTCCTGCAGCGTGTGTGACAGCGCTCAGAACGTGCAACA
CACGGAGTGCTGCAGTGAGCGGCTCAGGTGCACACTTCGAGCAGGGCGCG
CGGTGCTGGTGAGGTGCGCTTGTGTCACAGCTTGAGTTGTTGGCTACTTG
ATTGCAGGCTCACAAGCGGTAGGGTCACTTGACGAATGTAGAGCAGTGCA
GTGTTGTGATTTGCCTTGTGGAGCATGTGCAACCCACAAAGACAAAGACT
TGTATAGTGGCGCTGTGAAATGCACGCATGCAACATCAAATCCATGTTGT
GTTTGACTGCTGCGCACGCCCTCTTCTACGTCTACCTGCGTCATTTGCGC
TGCCTGCTGGCACGTGGCTGTGCATCAGATGTGCATTCAGTGGCTGTGCC
TGAACAAGTGTTGCTTCGCATATTGTAGCAATGGCAATTTTGCTGTGTAG
CAAGTGACTTCTAGCAACATCAGCATGTTGCGGTACATGCTCCCAACAAT
TGACATTAATCCTCATGTATGCGGCCTGGTTGACTTCTGCATACGAGCAA
GACAAGGCACTTGTTCAACAAGTTGTTCCAACCTGCGTATGCTCTGGGTG
CGCCTGCTGCTTGCTGCCACCTGCTGCTTCGACCTGGCTCTCTGACATTG
AAGCAGGATGGAACAAATCCCAGTGCTGGCGGGCCTAACGGCACTTGCAG
TGGTGTCACATGGTGCTGTGTGCTGATGCCTGCCTATCATGCTTTAATGC
TGTCGATTCTTCTGCTGCAAAGCATGCATCTGTGCAAGTTCAAGGCATAC
TGATGTGTTTGTGCTACTACGCCATGATGCTAGGGGAGTGATGCCATATG
CTCATAAGCTGCAGCGGAGTGTATGCGGGCATGCACAACCCTTATACGCC
GCCATGTACGGATGTACGACAGTTTATACCATGTAGTACGCATATACGCC
AACATATGCGGTGTACAGATGTACGCCATATATGATCGGCACATGTGTGT
TTAGTAGCAACCTAGCAAAATGTGCCACAGTGTGCACAGCAGCACCAATC
TGCCACATTATGGTGACGCATTCGTCCGCAATTGTGAGTTCATGGTGTTG
CAAAGCATATGCGCACAGAACCTGCAATGTGCATATACAATGCTACCAGT
ACGAGAGTGATTGATGTGTTTGCAGAAGCAGAATGCTGCTGAATCAGACC
CTAATTGTAGGGCATCATTAACTCCCTCATGTATCACAACGGCCCCTACC
GGTAGCACATCCGCACCATTGCTCAGAGATCAGATGCCAACCAACGCCTG
GTGATCAATGAGGTGAAAGTCAGACATGCCATGCAAACTCAGCACTTGGT
GCACACTAGCAGCTGCACCTTGCAAGCCAGCATGCACACCAATAGCAAGC
TACGCAGTGCAGTGTCACATGGTGCTGCCGCCCCAAGCAAGCCTTGCGCG
CTGCGCGGCGCCCGCTCACGTCCACCATGCATCATGATGCATGTACTACT
GGTAGGCTGTGAAGGCCGGAAGCTTGCGTGTGCGCTGCAGACACACCCAT
ATGCCGGGGACTGTATGTGTACCACTGCCGCTAGCTGCTGCAGCATGCTG
ACAATGCGTGTACCCACTGCATTCAGAGATGATTGCAGGTGGCGCTGCAA
ATCTTCGGCGTCGCCACAGGATGCGTCATCGTCGGCTTCATGTTGACTGG
GCAAAGCACTACCGCACACCATATTCAGCTGTATGCATGTGGCCTGAGGG
AACTCAGAATGCAACAGTTTGCCTAAGTCATCAGTGCAGGCGCGCGGTAG
TTCCAGGGCAGCAACTGCTGACCGCACTTCCTTTGCTGGCTGCGCCTCCG
GCAGGAGCACCTCACTGCGCAGCAGCGGTTACGCTTCCCCTGCACCTGCA
CATGCTCACGTCGCGTTTTGCTCCTATTATTACATCATTCCCAGTGCTTG
CTGGTCTCCCTGGCCGCGACTGTCAATGAAGGTCTTGAAAGTGGCACAAC
CGCCGCCAGGGCTGCCAGGCAATGCAACAAGGAGCGCCAGCAGTTGCTCG
ACTCCCTTGCCATCACAAATGTAAGTAGAGGATAAAAGCCTCCTGCTCCT
CCTGTGTGCGCCCCAATGTCTCTCAGCTGCAGGTCAGCGCCAATTCAATG
CAGCTCAAGTTCCAGCATCCATTCTTTTTGTTTTTGCGCCCGCAGCGGAA
ATACTGCCCCCCCAGAATTGCCAGAATTGTCAGCTCAGGTGCGCTGTGTC
TGACATCAGTTTTTTTTCTTTGTGATTCTTGGCTGTAAGTGCTGTGTCAA
GTGCCCACATTATCTTCAGACTCATCAGTCCTTCAACAGTGCATGGTCCT
TGGCAGTGGCGTCAGGGGGACGGTAACAAAACTCTGCTGCAGCTTGTGAA
GGTGAAGAAAAGATGAAGGTGAGCAATTCCAACAAGGAATTCATTAATGA
GCAAGGACACGATGGCGTGAAGCAGGCCCAAGACTGTCCGCTGCTCCTCG
CACGCTCGTGACTGTGTACGTCATTCTGCAAGCATACCTCTACATACTCG
GGCTTGCAAGGTGGCATCCCCCGCAGTTCAAAAGCACGGCATTGCACGAC
ATAGAGAAGCATCATGCACGAACCATGGTAAAAGAAATCGCTGCTGCGAC
TAGTAGTGATATGCAAGGAACGGCATTACTGTCAACGCGCTATGCTGATG
CTGTATACGTAGGTGGGAAAAAGCACTATGCCTGTAGCCGCATGCACCAC
CACGCGACATCTCATTTGACTGCAAAGAATCCAGAATGAGGAGATCAGAA
TGCCACTCTGTAATCAGTCATCTGATACAGCAACACGCAGCGCGCGGCAT
GGACTGCTGCACACTGTACAGTCACTACATCAACGCAGCATTTGCATGGC
CATGGAATCAGTAGTGGATGCTGTGTGAAAACAATCATCGTTGACTGTTG
CTGTCCATTCCAGAACGGTTTGCACACAGCACACCTGCCAAAGGATCCGG
CATGTATGGGTCACCAGCCCTCAGGCTGGTGCCAGGATGGCAGTGTCAAG
CTCCTCTTGTCTGGATCTGATGCACGTTGATTGCTTGAACGTCAATTATG
TTCAGCTCCCGATCATAGTTCCTCAATCAGAAGACAGTTTTTTGGCACTC
ACACTTCAACTTTCAAGTGTGCACTTCAACTATTTCGCGAAGAACAGACG
CTCGAAGACGGCTAGGAATCTAGTAGCGGCGGCGGCAAGGTCCATCGTAG
TGCAACCATCGAAGTTCGTTACAATAAAACAGTCTAGATTCAAGAAACAG
CAAGCAGCCAGCATGGTGCGTTCATCGAAGCGGGGTAGACGCCGCAATGG
TTCCAGCAGCCGTGATGACCGGGACTTGACGCTGTACGGTGGAGGTTTTT
AAGATCCTGGCATCACTTTCGCTGCTGCCTAAGCCCGCATGGGGCCTTAG
CTGCAGCGCGAAGTGAAGATGGCGGTGAAGATCCTCGTCCGCACAGAAAT
GCCTGCCGCCGTCTTTCGCGCGTTGCTGACCACCAGGACAGTCAAGCACC
TGATTGTCCACGGTGCAATGCCGCGAGTACACGTCATGCCGACCACAATC
GAGGCTCTGGAGCTGCACGGAGTTCGTGGCAGGGTTAAGGACATGCCGCA
GCATCTGCACTCCCTCACGCTCTTGCTGCCGCAAGGAATGGGCAGCGCAT
ACGCAGCGGCGTACCTCAGCATGCTGCCACAGACTGTGCACAGCCTGGCT
CTCGACGCCAGTCAGTGTCAGGCAAGTCTGGCGGATCTGGCGCTGCCAGC
CTGCCTGCGGACGCTGAGATTGACGCACCTGCGTGAGCTCCCCGCTCTGC
CCGCCTCTCTCACCAGCATCACGTCGAAGTCGTGCTCTTTCGAGGCTCCG
GCACAGCTGCCGCCATCGGTGACGGATGCCACCCTCAGGGACTTCTGGTG
CCGTATCGACCACTACAGGAGAACGAGCGTCGCAGTCATGGCCCCAATCT
CTGCCGCTTGCGGCTGATGGAGCTGCAACCTTGGTGGGCAGTACAACCCT
GCCACAGCGCCTCACTGACCTACACATTGAGTTTGAGCATGACAGCTGGA
GAGAGGATTCAGTGACCCTGACAGTGCTGCTGCAGAGCCTGGAGGTGCTG
ACGCTGTCAAGCGGCGGCTACATGCGCCTAAACCTCACGCTCGGCGCGCT
GCCACACAGCCTTGAAACGCTGGATACAACGTGCTTCGCCAACTTCAGCA
GCGCCCTGGGCCAGCTGCCCGAGAGCATTACCTGCCTAAACCTCGGCGCG
AGCTTCAACCAAGCCCTCGAGGCGCTACCAGCTGCCCTGACGGAGCTGCG
CATCCACAACGGGACCCCGTGGGGCAATTGCTCCTTCAACAAGCCCCTTG
GCACCGTCCCGCCGTCGCTGCGGACACTTGATTTAGACCAGTGCTGCCGC
TTCAATCACCTACTCGGCCGCCTGCCGCGCACGCTCCGCAAACTGCGCCT
CGGCGCCGCCTTCAACCAACCGCTG
back to top

Coding sequence (CDS) from alignment at Contig_11:1114536..1125110+

>mRNA_4811 ID=mRNA_4811|Name=jgi.p|Trimin1|160059|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1512bp|location=Sequence derived from alignment at Contig_11:1114536..1125110+ (Tribonema minus UTEX_B_3156 )
ATGGGTACGCTCCCGCGGTCGCTGCGGGTGCTCGATTTGCCTCGGTGCCG
CCAATTCAATCACCTGCTGGGCTGCCTGCCCCTTGCGCTCCGCGAGCTGC
GCCTCGGCGCCGCCTTCAACCAGCCGCTGCTGCACGCACCGCTCCCCGCC
GCGCAGGGTCAGCAGGCAGCGGCGCAAGCTCTCTGTGCCGGGCTGGCTGC
GGAGCCACTGCAGCCACCGCCCGACACGCTTGTGCGGCTGCCTGAGACCC
TCACAGAGCTGCATGTGGGCGAGGCCTTTGACCACCCCCTGGGGCCACTC
CCTGAGAGCCTGACGGAGCTGCAGGTGGGCGGGTGCAGCGGCGACAGCTG
CTTCAGCCACGCCCTGGGCCCACTGCCTGCGGCGCTGCGCATACTAGACC
TGGGGGTGTGCGCCGCATACAACCATGCGCTCTATGGCCTGCCGGACACG
CTACGCAGTGTTTGCCTTGGCCACATGGGTGACCAGCCATTGCTGCATTT
TCCTGCGCGACTCGAGGTGTTGGCACTGGGGGATTCGTTTGATGCGGCTC
TGCCAGCAGTGCTGCCGCGCACGCTGCGCGAGCTGTACCTAGGGAACCGC
TTCAACGCACCACTGACGCTGCCGCCGGGGCTGAATTTGCTGGCCATCGG
CGACCGGTACCCGCACCGGCTTGACCTGGCGGCGTTGCCGCTGAAGAAGC
TATACCTGCGGGTGGGCAGGTGCAGCTGCGACTGCTGCTTCAGCCACGCC
CTGGGGCCACTGCCTGCTGCACTGCGCATACTAGACCTGTCGACATGTGC
CATGTACAATCATGCGCTCAGTAGCCTGCCAGACACGCTACGCGAGCTGC
GCCTTGACAGCGACTTTGACCAGCCACTGCCGCAGCTCAATGCGTGCCTC
GAGGTGCTGGCGCTGGGGGATGCATTCGATGCGGCTTTGCCAGCGGTGCT
GCCGCGTGCGCTGCGCGAGCTGCACTGGGGGAACGGCTTCAACGCACCGC
TGACGCTGCCGCCAAGGCTGAAGGTGCTGACCATCGGCATCAGCTACACG
CATCGGCTTGACCTGGCGGCGCTTTCGCTGAAGGAGCTGCGCGTCGGCCG
CAGCTACGCGAATGCGCTGCCGCCCCTGGAGGTGCTGACGCTGTCAAGCG
GCGGCTACATGCGCCTAAACCTCACGCTCGGCGCGCTGCCACACAGCCTT
GAAACGCTGGATACAACGTGCTTCGCCAACTTCAGCAGCGCCCTGGGCCA
GCTGCCCGAGAGCATTACCTGCCTAAACCTCGGCGCGAGCTTCAACCAAG
CCCTCGAGGCGCTACCAGCTGCCCTGACGGAGCTGCGCATCCACAACGGG
ACCCCGTGGGGCAATTGCTCCTTCAACAAGCCCCTTGGCACCGTCCCGCC
GTCGCTGCGGACACTTGATTTAGACCAGTGCTGCCGCTTCAATCACCTAC
TCGGCCGCCTGCCGCGCACGCTCCGCAAACTGCGCCTCGGCGCCGCCTTC
AACCAACCGCTG
back to top