mRNA_8086 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349274
Unique NamemRNA_8086
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|349274 vs. uniprot
Match: A0A835YUX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUX2_9STRA)

HSP 1 Score: 490 bits (1262), Expect = 4.940e-174
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 1
Query:    1 MERAPPPAPTGLANYQDMMRMVFTSMAGRRLLPKEGWGLNRAIRDTAAPTVSVHVKRAPLKADSTSCTILHGLLEDSARRLVVKLTMEGDFTSVQERPLSLPPSLVSLYLNGFRGLRELDLVAFPQLDELPPGLRFLKLRNHDHPLPPLXXXXXXXXXXXXXXXXXXXXXXXRSLSLYWLPPNPAPPLPTRWPAHLERLMYWAKSDGAPMPVIKRLPPTLRELALNGCEVHASLPRTLQKVRLGRNFTQQLTFTGRVTVNSNDNWYF 801
            MERAPPPAPTGLANYQDMMRMVFTSMAGRRLLPKEGWGLNRAIRDTAAPTVSVHVKRAPLKADSTSCTILHGLLEDSARRLVVKLTMEGDFTSVQERPLSLPPSLVSLYLNGFRGLRELDLVAFPQLDELPPGLRFLKLRNHDHPLPPLXXXXXXXXXXXXXXXXXXXXXXXRSLSLYWLPPNPAPPLPTRWPAHLERLMYWAKSDGAPMPVIKRLPPTLRELALNGCEVHASLPRTLQKVRLGRNFTQQLTFTGRVTVNSNDNWYF
Sbjct:    1 MERAPPPAPTGLANYQDMMRMVFTSMAGRRLLPKEGWGLNRAIRDTAAPTVSVHVKRAPLKADSTSCTILHGLLEDSARRLVVKLTMEGDFTSVQERPLSLPPSLVSLYLNGFRGLRELDLVAFPQLDELPPGLRFLKLRNHDHPLPPLXXXXXXXXXXXXXXXXXXXXXXXRSLSLYWLPPNPAPPLPTRWPAHLERLMYWAKSDGAPMPVIKRLPPTLRELALNGCEVHASLPRTLQKVRLGRNFTQQLTFTGRVTVNSNDNWYF 267          
BLAST of jgi.p|Trimin1|349274 vs. uniprot
Match: A0A835YTI8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTI8_9STRA)

HSP 1 Score: 274 bits (700), Expect = 4.470e-87
Identity = 142/241 (58.92%), Postives = 164/241 (68.05%), Query Frame = 1
Query:   55 MRMVFTSMAGRRLLPKEGWGLNRAIRDTAAPTVSVHVKRAPLKADSTSCTILHGLLEDSARRLVVKLTMEGDFTSVQERPLSLPPSLVSLYLNGFRGLRELDLVAFPQLDELPPGLRFLKLRNHDHPLPPLXXXXXXXXXXXXXXXXXXXXXXXRSLSLYWLPPNPAPPLPTRWPAHLERLMYWAKSDGAPMPVIKRLPPTLRELALNGCEVHASLPRTLQKVRLGRNFTQQLTFTGRVTV 777
            MR VFTSMAGRRLLPKEGW LNR I DTAAPTV     +A ++AD+    I H LLED++RR ++ L MEGDFT +QERPLSLPPSLV L LNGFRGLREL+L+ FPQLDE+PPGLR LKL  ++HPLPPL                       RSLSLYW PP PAPPLP RWP HLERL YWA+ + A              L LNGC VH  LP+ L+++RLG  FTQ+LTFTGRVT+
Sbjct:    1 MRRVFTSMAGRRLLPKEGWSLNRVIHDTAAPTV-----KARVEADTVLFAIQHRLLEDTSRRFILDLIMEGDFTRIQERPLSLPPSLVRLELNGFRGLRELELLEFPQLDEVPPGLRVLKLHTYEHPLPPLPDTLETLVLDNCTHHVVDVPDSVRSLSLYWRPPEPAPPLPARWPPHLERLAYWARCEDA-------------ALELNGCVVHTCLPQNLREMRLGSEFTQRLTFTGRVTL 223          
BLAST of jgi.p|Trimin1|349274 vs. uniprot
Match: A0A836CCC0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCC0_9STRA)

HSP 1 Score: 204 bits (519), Expect = 1.480e-58
Identity = 137/318 (43.08%), Postives = 157/318 (49.37%), Query Frame = 1
Query:   22 APTGLANYQDMMRMVFTSMAGRRLLPKEGWGLNRAIRDTAAPTVSVHVKRAPLKADSTSCTILHGLLEDSARRLVVKLTMEGDFTSVQERPLSLPPSLVSLYLNGFR----------------------------------------GLRELDLVAF---------------PQLDELPPGLRFLKLRNHDHPLPPLXXXXXXXXXXXXXXXXXXXXXXXRSLSLYWLPPNPAPPLPTRWPAHLERLMYWAK--SDGAPMPVIKRLPPTLRELALNGCEV-HASLPRTLQKVRLGRNFTQQLT-----FTGRVTVNSN 786
            APT  AN+ ++MR VFTSMAGRRLLPKE W LNRAI DTAAPTV VH     L A S S  I H LLE   RRL+V LTMEGDFT +Q  PLSLPPSLV L L GFR                                        GL  L + A                P+L +LPPGLR LKLR ++HPLPPL                            + L   PAPPLP  WPAHLE L+YWA   SD      +  LP TL  L LNGC V   ++P+TLQ++RLGR            FTG + +NSN
Sbjct:  215 APTAPANHHEIMRRVFTSMAGRRLLPKESWSLNRAIHDTAAPTVEVH-----LVAGSASPAIAHCLLEGIVRRLIVNLTMEGDFTKIQAHPLSLPPSLVRLSLRGFRVHWQDLIALLSPAVANVEVHSCLFASDIRSHAVTILSLPEGLSSLQMAACNTVSSGRVIFSRAPTPELADLPPGLRVLKLRAYEHPLPPLP---------------------------HTLETLPAPPLPDDWPAHLEHLVYWATAASDSEDRAWVDHLPLTLTRLELNGCAVLDGAVPQTLQELRLGRELRHAFDLDVKKFTGTIKINSN 500          
BLAST of jgi.p|Trimin1|349274 vs. uniprot
Match: A0A835ZHU4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHU4_9STRA)

HSP 1 Score: 198 bits (503), Expect = 1.040e-57
Identity = 136/354 (38.42%), Postives = 167/354 (47.18%), Query Frame = 1
Query:    4 ERAPPPAPTGLANYQDMMRMVFTSMAGRRLLPKEGWGLNRAIRDTAAPTVSVHVKRAPLKADSTSCTILHGLLEDSARRLVVKLTMEGDFTSVQERPLSLPPSL------VSLYLNGFRG----------------------------------------------------------------------------------LRELDLVAFPQLDELPPGLRFLKLRNHDHPLPPLXXXXXXXXXXXXXXXXXXXXXXXRSLSLYWLPPNPAPPLPTRWPAHLERLMYWA----KSDGAPMPVIKR-LPPTLRELALNGCEVHASLPRTLQKVRLGRNFTQQLTFTG--RVTVN 780
            ER   PAP G  + Q+++ MVFTSMAGRRLLPK+ W L+R + DT AP + VH     L ADS +   LH LLED++RR V +LT++GDFTS+Q+RPL+L P L      V +    F G                                                                                  LR L L  F QL ELPP LR L L+ + +PLP L                       RSL+LYW P  PAPPLP RWPAHLERL+ WA    + D AP P I R LPPTL +L LNGC +   LP+TLQ +RLGR F+Q+L   G  +VTVN
Sbjct:    4 ERIRVPAPAGSLSQQEIVMMVFTSMAGRRLLPKKCWSLSRLLHDTVAPIIKVH-----LVADSINAATLHRLLEDTSRRNVQRLTLDGDFTSMQQRPLNLVPLLSPAVAQVDVAFCSFSGSIEDVLTIPSLPEGVASLSVTAGFSRDVVWAFSKLPQSLRHLIVDATTDVIVFEQPLPTLLESFIVESGGEVHVGAGSLPASLRNLQLWGFQQLYELPPRLRVLMLQRYIYPLPLLPDTLETLVLDYCTHHVSNLPDSVRSLALYWHPAQPAPPLPARWPAHLERLVDWAVGESEPDDAPEPCIDRPLPPTLTQLELNGCSIATDLPQTLQTLRLGRGFSQELDLAGSFKVTVN 352          
BLAST of jgi.p|Trimin1|349274 vs. uniprot
Match: A0A835YUY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUY3_9STRA)

HSP 1 Score: 196 bits (499), Expect = 1.380e-57
Identity = 114/235 (48.51%), Postives = 134/235 (57.02%), Query Frame = 1
Query:   28 TGLANYQDMMRMVFTSMAGRRLLPKEGWGLNRAIRDTAAPTVSVHVKRAPLKADSTSCTILHGLLEDSARRLVVKLTMEGDFTSVQERPLSLPPSLVSLYLNGFRG--------LRELDLVAF----------PQL-----------------------DELPPGLRFLKLRNHDHPLPPLXXXXXXXXXXXXXXXXXXXXXXXRSLSLYWLPPNPAPPLPTRWPAHLERLMYWA 609
            TG  ++QD++R+VFTSMAGRRLLP+EGW L+RAI DTAAP V V      L+A      + H LLED+AR+L+V+LTMEGDFT +Q RPLSLPPSLV L L GFRG        LR+L L A+          P L                       +ELPP LR LKL  ++HPLPPL                       RSLSLYW PP PAPPLP RWPAHLE L YW+
Sbjct:   80 TGDRSHQDIIRIVFTSMAGRRLLPEEGWSLSRAIHDTAAPIVKVR-----LEAGGVPIAMAHHLLEDTARKLIVELTMEGDFTEIQARPLSLPPSLVQLELAGFRGELGPAPSGLRKLSLCAYCEDGDKIIPHPPLADINDGDAMQNLLQEMAELIRAFNELPPSLRVLKLHKYEHPLPPLPDTLETLVLDECTGHIAQLPNSVRSLSLYWRPPRPAPPLPARWPAHLEHLTYWS 309          
BLAST of jgi.p|Trimin1|349274 vs. uniprot
Match: A0A836CEP4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEP4_9STRA)

HSP 1 Score: 183 bits (464), Expect = 5.610e-52
Identity = 133/255 (52.16%), Postives = 148/255 (58.04%), Query Frame = 1
Query:   76 MAGRRLLPKEGWGLNRAIRDTAAPTVS-VHVKRAPLKADSTSCTILHGLLEDSARRLVVKLTMEGDFTSVQERPLSLPPSLVSLYLNGFRG--------LREL-------------------DLVAFPQLDELPPGLRFLKLRNHDHPLPPLXXXXXXXXXXXXXXXXXXXXXXXRSLSLYWLPPNPAPPLPTRWPAHLERLMYWAKSDGAPMPVIKRLPPTLRELALNGCEVHASLPRTLQKVRLGRNFTQQLT 756
            MAGRRLLPKEGW LNRAI DTAAPT     ++  PL   +T             RR ++ LTME                 V L LNG RG        LR                      LV  PQL+ +PPGLR LKLR+++HPLP L   XXXXXXXXXXXXXXXXXXX R LSLYW PP PAPPLP RWP HLERL+YW KS  A  P I  LP TLR+L LNGCEVHA LP+TLQ+VRLG    + LT
Sbjct:    1 MAGRRLLPKEGWSLNRAIHDTAAPTGDFTSIQERPLSLPATL-----------GRRRIISLTMEXXXXXXXXXXXXXXXXXVRLELNGSRGELGPAPAGLRXXXXXXXXXXXXXXXXXXXXXQLVGSPQLEHVPPGLRALKLRDYEHPLPQLPDTXXXXXXXXXXXXXXXXXXXVRLLSLYWQPPQPAPPLPARWPTHLERLVYWGKSAVAEPPRIAHLPRTLRQLELNGCEVHARLPQTLQRVRLGPTMARSLT 244          
BLAST of jgi.p|Trimin1|349274 vs. uniprot
Match: A0A835Z5Y5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Y5_9STRA)

HSP 1 Score: 172 bits (436), Expect = 9.750e-50
Identity = 111/265 (41.89%), Postives = 135/265 (50.94%), Query Frame = 1
Query:    4 ERAPPPAPTGLANYQDMMRMVFTSMAGRRLLPKEGWGLNRAIRDTAAPTVSVHVKRAPLKADSTSCTILHGLLEDSARRLVVKLTMEGDFTSVQERPLSLPPSLVSLYLNGFRGLRELDLVAFPQLDELPPGLRFLKLRNHDHPLPPLXXXXXXXXXXXXXXXXXXXXXXXRSLSLYWLPPNPAPPLPTRWPAHLERLMYWA--KSDGAPMPVIKR-LPPTLRELALNGCEVHASLPRTLQKVRLGRNFTQQLTFTGRV--TVNS 783
            ER   PAP G +  Q+++RMVFTSMA RRLLPK+ W L+R + DT AP + VH     L ADST+  ILH LLE ++RR + +LT++GDFTS Q+RPLSLPPSLV L LNGFR                                                                            RWP  LERL+YWA   S  AP P I R LPP L EL LNGC +   LPR LQK++LGR+F+Q+L  TG +  TVNS
Sbjct:    4 ERIRVPAPAGSSTQQEIVRMVFTSMARRRLLPKKYWSLSRLLHDTVAPMIKVH-----LVADSTNSVILHRLLEGTSRRRIRRLTLDGDFTSTQQRPLSLPPSLVRLELNGFRA---------------------------------------------------------------------------RWPVQLERLVYWAIGVSGDAPEPCIDRPLPPKLTELELNGCSIATHLPRMLQKLKLGRSFSQELCLTGSLIATVNS 188          
BLAST of jgi.p|Trimin1|349274 vs. uniprot
Match: A0A835YUB3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUB3_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.410e-42
Identity = 106/154 (68.83%), Postives = 123/154 (79.87%), Query Frame = 1
Query:  343 GLRELDL--VAFPQLDELPPGLRFLKLRNHDHPLPPLXXXXXXXXXXXXXXXXXXXXXXXRSLSLYWLPPNPAPPLPTRWPAHLERLMYWAKS-----DGAPMPVIKRLPPTLRELALNGCEVHASLPRTLQKVRLGRNFTQQLTFTGRVTVNS 783
            GLR LDL   A  QL+ELPPGLR LKL  ++HPL PLXXXXXXXXXXXXXXXXXXXXXXX SL+LYW  P PAPPLP RWPAHLERL+YW+KS       APMP+I+RLPPTLR L LN CE+ A LP+TLQ++R+GR FT ++ FTGRV +N+
Sbjct:   93 GLRVLDLSRCARMQLNELPPGLRVLKLHKYEHPLRPLXXXXXXXXXXXXXXXXXXXXXXXXSLALYWQTPEPAPPLPARWPAHLERLVYWSKSASGEAGSAPMPIIERLPPTLRYLELNRCELRARLPKTLQELRVGREFTDRVDFTGRVVLNA 246          
BLAST of jgi.p|Trimin1|349274 vs. uniprot
Match: A0A835Z4J5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4J5_9STRA)

HSP 1 Score: 155 bits (391), Expect = 5.390e-40
Identity = 158/482 (32.78%), Postives = 190/482 (39.42%), Query Frame = 1
Query:    1 MERAPPPAPTGLANYQDMMRMVFTSMAGRRLLPKEGWGLNRAIRDTAAPTVSVHVKRAPLKADSTSCTILHGLLEDSARRLVVKLTMEGDFTSVQERPLSLPPSLVSLYLNGFRG--------LREL----------DLVAFP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QLDELPPGLRFLKLRNHDHPLPPLXXXXXXXXXXXXXXXXXXXXXXXRSLSLYWLPPNPAPPLPTRWPAHLERLMYWAKSDGAPMPVIKRLPPTLRELALNGCEVHASLPRTLQKVRLGRNFTQQL---TFTGRV 771
            +ER   PAP    + Q+++RMVFTSMAGRRLLPKE W L+  + DT APT+ VH    P+ ADS    +LH LLED++RR +  LT++GDFTS+Q+RPLSLPPSL  L LNGFRG        LREL          D+V  P                                                                                                                                                                                                             LD +P GLR L LRN+ H     XXXXXXXXXXXXXXXXXXXXXX RSLSLYW P  P PPLP RWP HL+RL+Y  +S  +P+P I+ LPPTL +L LNGCEV  SLP+ L+++ LGR FTQ +    F GRV
Sbjct:    3 VERIRVPAPASSLSQQEIVRMVFTSMAGRRLLPKECWSLSSLLHDTVAPTIEVH----PV-ADSADSAVLHRLLEDTSRRRIRCLTLDGDFTSIQQRPLSLPPSLERLELNGFRGELGAAPSGLRELHLYAGFDRGEDIVPHPLLAELYDSALDSPDDSAIGSEAAWEFVGEMAEIVKAFLPTLRVLVVCGLSQMVSLQALMTKLVETPLPRLQVLSLHNWAVPWEDLLLLLSPVLAKVKLENCLILVLYADIDTPKYTVPALPEGLVSLDLDLCFSHVDLWVFGGLPESLRHLVVVMEGISVRFEAPLPTLLESFRAETLGSGIHIDMGLLPAGLRKLKLAGAEQQPLDRVPAGLRVLMLRNYRHXXXXXXXXXXXXXXXXXXXXXXXXXXXLRSLSLYWRPAFPTPPLPARWPVHLQRLVYCGESHQSPVPGIEHLPPTLGQLTLNGCEVRTSLPQMLEELCLGRQFTQAIDLDNFRGRV 479          
BLAST of jgi.p|Trimin1|349274 vs. uniprot
Match: A0A836CD10_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD10_9STRA)

HSP 1 Score: 153 bits (386), Expect = 7.090e-40
Identity = 85/133 (63.91%), Postives = 97/133 (72.93%), Query Frame = 1
Query:    1 MERAPPPAPTGL-ANYQDMMRMVFTSMAGRRLLPKEGWGLNRAIRDTAAPTVSVHVKRAPLKADSTSCTILHGLLEDSARRLVVKLTMEGDFTSVQERPLSLPPSLVSLYLNGFRG---------LRELDLVA 369
            MERA PPAP+GL  ++QDMMR VFTSMAGRRLLPKEGW LNRAI DTAAPTV   + RA + A S    + H LLED+ RRLVV+L ++GDFT++QERPLSLPP LV L L GFRG         LREL L A
Sbjct:    1 MERARPPAPSGLFTDHQDMMRRVFTSMAGRRLLPKEGWSLNRAIHDTAAPTVMYRLYRARVGAGSAPLALPHRLLEDTRRRLVVQLLIDGDFTNIQERPLSLPPFLVRLELYGFRGELGPPPSGGLRELRLCA 133          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349274 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A835YUX2_9STRA4.940e-174100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YTI8_9STRA4.470e-8758.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CCC0_9STRA1.480e-5843.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZHU4_9STRA1.040e-5738.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YUY3_9STRA1.380e-5748.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CEP4_9STRA5.610e-5252.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z5Y5_9STRA9.750e-5041.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YUB3_9STRA1.410e-4268.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z4J5_9STRA5.390e-4032.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CD10_9STRA7.090e-4063.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_40contigContig_40:648951..650456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349274|estExt_Genemark1.C_Ctg_400073
Hectar predicted targeting categoryother localisation
TranscriptId349596
TrackFilteredModels1
ProteinId349274
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349274gene_8086Tribonema minus UTEX_B_3156 geneContig_40 648951..650456 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8086_1exon_8086_1Tribonema minus UTEX_B_3156 exonContig_40 648951..649293 +
exon_8086_2exon_8086_2Tribonema minus UTEX_B_3156 exonContig_40 649912..650456 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8086CDS_8086Tribonema minus UTEX_B_3156 CDSContig_40 648951..649293 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_8086UTR3_8086Tribonema minus UTEX_B_3156 three_prime_UTRContig_40 650373..650456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349274Trimin1|349274|estExt_Genemark1.C_Ctg_400073Tribonema minus UTEX_B_3156 polypeptideContig_40 648951..650372 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8086 ID=mRNA_8086|Name=jgi.p|Trimin1|349274|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=888bp|location=Sequence derived from alignment at Contig_40:648951..650456+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCGCGCCCCGCCGCCAGCACCAACAGGCCTTGCAAACTATCAGGA
CATGATGAGGATGGTGTTCACCAGCATGGCGGGGCGCAGACTGCTGCCAA
AGGAAGGCTGGGGCCTCAACAGGGCCATCCGCGACACAGCCGCTCCCACG
GTCAGCGTTCACGTGAAACGGGCCCCACTGAAGGCGGACAGCACCTCCTG
CACCATCCTACATGGCCTCCTGGAGGACTCTGCTCGGAGGCTTGTCGTGA
AGCTGACGATGGAGGGCGACTTCACAAGTGTCCAGGAGCGTCCGCTGAGC
CTGCCACCCTCCCTTGTGTCGCTGTATCTTAATGGCTTCAGGGGCCTTCG
GGAGCTGGACCTAGTAGCATTTCCGCAGCTTGACGAGCTCCCACCTGGCT
TGCGGTTCCTCAAGCTGCGCAATCATGATCACCCGCTGCCGCCACTGCCG
GACACACTTGAGACGCTGGTGCTGGACAACTGCACGCACCACGTCGCTAA
CATCCCCGACAGCGTGCGGTCACTGTCGCTATACTGGCTGCCTCCCAATC
CCGCACCGCCGCTTCCCACCCGCTGGCCCGCGCACCTCGAGCGTCTCATG
TATTGGGCAAAGTCAGACGGTGCGCCAATGCCTGTCATCAAGCGACTGCC
TCCCACGCTGAGAGAGCTGGCGCTCAACGGGTGTGAGGTCCACGCAAGCC
TGCCGCGGACGCTGCAGAAGGTGCGCCTGGGCAGGAATTTCACGCAACAG
TTGACGTTCACGGGCAGGGTCACAGTCAACAGCAATGATAATTGGTACTT
TTGACTAGGGTCGTCGAATAGTGCGTGTGACACCGAATACACAACTGGCT
ATCTTTCATTGGAGAATGAATCAACACTTTGTTTTGCA
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protein sequence of jgi.p|Trimin1|349274

>Trimin1|349274|estExt_Genemark1.C_Ctg_400073 ID=Trimin1|349274|estExt_Genemark1.C_Ctg_400073|Name=jgi.p|Trimin1|349274|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=268bp
MERAPPPAPTGLANYQDMMRMVFTSMAGRRLLPKEGWGLNRAIRDTAAPT
VSVHVKRAPLKADSTSCTILHGLLEDSARRLVVKLTMEGDFTSVQERPLS
LPPSLVSLYLNGFRGLRELDLVAFPQLDELPPGLRFLKLRNHDHPLPPLP
DTLETLVLDNCTHHVANIPDSVRSLSLYWLPPNPAPPLPTRWPAHLERLM
YWAKSDGAPMPVIKRLPPTLRELALNGCEVHASLPRTLQKVRLGRNFTQQ
LTFTGRVTVNSNDNWYF*
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mRNA from alignment at Contig_40:648951..650456+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8086 ID=mRNA_8086|Name=jgi.p|Trimin1|349274|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1506bp|location=Sequence derived from alignment at Contig_40:648951..650456+ (Tribonema minus UTEX_B_3156 )
ATGGAGCGCGCCCCGCCGCCAGCACCAACAGGCCTTGCAAACTATCAGGA CATGATGAGGATGGTGTTCACCAGCATGGCGGGGCGCAGACTGCTGCCAA AGGAAGGCTGGGGCCTCAACAGGGCCATCCGCGACACAGCCGCTCCCACG GTCAGCGTTCACGTGAAACGGGCCCCACTGAAGGCGGACAGCACCTCCTG CACCATCCTACATGGCCTCCTGGAGGACTCTGCTCGGAGGCTTGTCGTGA AGCTGACGATGGAGGGCGACTTCACAAGTGTCCAGGAGCGTCCGCTGAGC CTGCCACCCTCCCTTGTGTCGCTGTATCTTAATGGCTTCAGGGGTGAGCT GTGCCCAGCGCCAGCGGGCCTACAAGTGCTGTGTTTGCAAGCTTACCGGA TGGGCGAAGGTGATGCGACAATCCCTCACCCTTTGCTCAAAGACCTCACT GACGGCGATGCCGTGCAATGCTTCGTTCGAGAGTTGTCAGAGATCATCGC GGCTATGCTGCCTACCCTGACACACCTAGTGCTAGATGGTTTGAACGAAG ATGACTCAGGTGACCCGATTAGTTTGCGCTCTTGCATGCAGGCGCTGATC CAGCTGCCACGTCCACACCTCCAGGAGTTGATTTTTCGTGGCTGGATAGT GCACTGGGAGGACCTGCTCCCATTGCTATCACCAGCTGTGGTGGATATAA TGATTCAGTCCTGCTTCTTTGACTCGGCTGTTGTGTCAGACATGTTGACT CTACCACCGTTGCCCGAGGGGCTATCATCTCTGACGGTGAACGGCTGCTA CTGTGACAGCTCCCGCCTAGTGTTCAGTGGAATTCCGGAGAGTCTGCGTC GCCTTGACGTTACAATGAGCCCCACCGACGTCCAATTTCGGGAGCCGCTG CCACCTCTGCTGGACTGTCTCAGGGGTGATGCCAGTGTCAGTGGCAGCAT GCTGCCACCAGGCCTTCGGGAGCTGGACCTAGTAGCATTTCCGCAGCTTG ACGAGCTCCCACCTGGCTTGCGGTTCCTCAAGCTGCGCAATCATGATCAC CCGCTGCCGCCACTGCCGGACACACTTGAGACGCTGGTGCTGGACAACTG CACGCACCACGTCGCTAACATCCCCGACAGCGTGCGGTCACTGTCGCTAT ACTGGCTGCCTCCCAATCCCGCACCGCCGCTTCCCACCCGCTGGCCCGCG CACCTCGAGCGTCTCATGTATTGGGCAAAGTCAGACGGTGCGCCAATGCC TGTCATCAAGCGACTGCCTCCCACGCTGAGAGAGCTGGCGCTCAACGGGT GTGAGGTCCACGCAAGCCTGCCGCGGACGCTGCAGAAGGTGCGCCTGGGC AGGAATTTCACGCAACAGTTGACGTTCACGGGCAGGGTCACAGTCAACAG CAATGATAATTGGTACTTTTGACTAGGGTCGTCGAATAGTGCGTGTGACA CCGAATACACAACTGGCTATCTTTCATTGGAGAATGAATCAACACTTTGT TTTGCA
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Coding sequence (CDS) from alignment at Contig_40:648951..650456+

>mRNA_8086 ID=mRNA_8086|Name=jgi.p|Trimin1|349274|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=804bp|location=Sequence derived from alignment at Contig_40:648951..650456+ (Tribonema minus UTEX_B_3156 )
ATGGAGCGCGCCCCGCCGCCAGCACCAACAGGCCTTGCAAACTATCAGGA
CATGATGAGGATGGTGTTCACCAGCATGGCGGGGCGCAGACTGCTGCCAA
AGGAAGGCTGGGGCCTCAACAGGGCCATCCGCGACACAGCCGCTCCCACG
GTCAGCGTTCACGTGAAACGGGCCCCACTGAAGGCGGACAGCACCTCCTG
CACCATCCTACATGGCCTCCTGGAGGACTCTGCTCGGAGGCTTGTCGTGA
AGCTGACGATGGAGGGCGACTTCACAAGTGTCCAGGAGCGTCCGCTGAGC
CTGCCACCCTCCCTTGTGTCGCTGTATCTTAATGGCTTCAGGGGCCTTCG
GGAGCTGGACCTAGTAGCATTTCCGCAGCTTGACGAGCTCCCACCTGGCT
TGCGGTTCCTCAAGCTGCGCAATCATGATCACCCGCTGCCGCCACTGCCG
GACACACTTGAGACGCTGGTGCTGGACAACTGCACGCACCACGTCGCTAA
CATCCCCGACAGCGTGCGGTCACTGTCGCTATACTGGCTGCCTCCCAATC
CCGCACCGCCGCTTCCCACCCGCTGGCCCGCGCACCTCGAGCGTCTCATG
TATTGGGCAAAGTCAGACGGTGCGCCAATGCCTGTCATCAAGCGACTGCC
TCCCACGCTGAGAGAGCTGGCGCTCAACGGGTGTGAGGTCCACGCAAGCC
TGCCGCGGACGCTGCAGAAGGTGCGCCTGGGCAGGAATTTCACGCAACAG
TTGACGTTCACGGGCAGGGTCACAGTCAACAGCAATGATAATTGGTACTT
TTGA
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