mRNA_1641 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|129722
Unique NamemRNA_1641
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|129722 vs. uniprot
Match: A0A836CDN4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDN4_9STRA)

HSP 1 Score: 171 bits (432), Expect = 9.060e-54
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1
Query:    1 AAALRRGALLCRENLLGSVKLLRKMEHTAAAVLELFPDLTLAVEEREPALAREFFATVRAWVGELYAAVKEVQQANHANAHAIRWVMSIS 270
            AAALRRGALLCRENLLGSVKLLRKMEHTAAAVLELFPDLTLAVEEREPALAREFFATVRAWVGELYAAVKEVQQANHANAHAIRWVMSIS
Sbjct:    1 AAALRRGALLCRENLLGSVKLLRKMEHTAAAVLELFPDLTLAVEEREPALAREFFATVRAWVGELYAAVKEVQQANHANAHAIRWVMSIS 90          
BLAST of jgi.p|Trimin1|129722 vs. uniprot
Match: A0A835YMG0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMG0_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.540e-34
Identity = 64/76 (84.21%), Postives = 69/76 (90.79%), Query Frame = 1
Query:    1 AAALRRGALLCRENLLGSVKLLRKMEHTAAAVLELFPDLTLAVEEREPALAREFFATVRAWVGELYAAVKEVQQAN 228
            AA LRR ALLCRENLLGSVKLLRK+EHTA AVLELFPDLTLAVEE+EPALA EFF+TVR+WVG+LY AVKEVQ  N
Sbjct:   27 AATLRRSALLCRENLLGSVKLLRKIEHTAGAVLELFPDLTLAVEEQEPALAHEFFSTVRSWVGDLYGAVKEVQAKN 102          
BLAST of jgi.p|Trimin1|129722 vs. uniprot
Match: D7G8N3_ECTSI (Calcium/ calmodulin-dependent protein kinase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8N3_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 4.080e-21
Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 1
Query:    1 AAALRRGALLCRENLLGSVKLLRKMEHTAAAVLELFPDLTLAVEEREPALAREFFATVRAWVGELYAAVKEVQQANHANA 240
            AA+LRR A LCRE+L  SV LL+K+E TAA V+ LFPDLTLAVEE EP LAR+FFATV++WV E+Y  V  VQ  N ANA
Sbjct:  563 AASLRRSAALCRESLRESVTLLKKIERTAAQVITLFPDLTLAVEEGEPDLARDFFATVKSWVREMYTDVNVVQAHNKANA 642          
BLAST of jgi.p|Trimin1|129722 vs. uniprot
Match: A0A6H5L327_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L327_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.380e-20
Identity = 52/80 (65.00%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    1 AAALRRGALLCRENLLGSVKLLRKMEHTAAAVLELFPDLTLAVEEREPALAREFFATVRAWVGELYAAVKEVQQANHANA 240
            AA+LRR A LCRE+L  SV LL+K+E TAA V+ LFPDL LAVEE EP LAR+FFATV++WV E+Y  V  VQ  N ANA
Sbjct:   13 AASLRRSAALCRESLRESVTLLKKIERTAAQVITLFPDLALAVEEGEPDLARDFFATVKSWVREMYTEVNVVQAHNKANA 92          
BLAST of jgi.p|Trimin1|129722 vs. uniprot
Match: A0A7S3XQ85_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ85_HETAK)

HSP 1 Score: 87.4 bits (215), Expect = 1.980e-19
Identity = 44/87 (50.57%), Postives = 65/87 (74.71%), Query Frame = 1
Query:    1 AAALRRGALLCRENLLGSVKLLRKMEHTAAAVLELFPDLTLAVEEREPALAREFFATVRAWVGELYAAVKEVQQANHANAHAIRWVM 261
            AA LR+GA+LCRE +  +  LLRK+E TAAAVL++F DL LAVEE+EP LA++FF ++R WVGEL+  ++E+Q    ++ + +  +M
Sbjct:   75 AATLRQGAVLCREQMRENAALLRKIERTAAAVLDIFADLELAVEEKEPELAQQFFESLRKWVGELHTQIQELQVQQRSSTNQVHDLM 161          
BLAST of jgi.p|Trimin1|129722 vs. uniprot
Match: A0A7S3HNC2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNC2_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.800e-18
Identity = 48/90 (53.33%), Postives = 61/90 (67.78%), Query Frame = 1
Query:    1 AAALRRGALLCRENLLGSVKLLRKMEHTAAAVLELFPDLTLAVEEREPALAREFFATVRAWVGELYAAVKEVQQANHANAHAIRWVMSIS 270
            A+ +R GA LCRE L  S+K+LR++E TAAAVL +FPDL LAVEE EP LA  FFATV+ WV +L   V   Q  N A+ H I+ ++  S
Sbjct:  476 ASEIREGASLCREQLTQSMKMLRQVEQTAAAVLSMFPDLELAVEEGEPQLALNFFATVKVWVKDLRELVNSTQSINKASMHQIQLIVERS 565          
BLAST of jgi.p|Trimin1|129722 vs. uniprot
Match: A0A4D9CU84_9STRA (Protein kinase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CU84_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 7.420e-16
Identity = 40/72 (55.56%), Postives = 54/72 (75.00%), Query Frame = 1
Query:   13 RRGALLCRENLLGSVKLLRKMEHTAAAVLELFPDLTLAVEEREPALAREFFATVRAWVGELYAAVKEVQQAN 228
            +R A+LCR  L+ ++KLL+K+E TAA+VLE+FPDL LA+E+ EP+LA +FF TVR WV  L  +V E Q  N
Sbjct:  461 KRSAILCRAQLIYTIKLLKKIEQTAASVLEMFPDLELAIEDDEPSLAHDFFETVRKWVAALRHSVAEAQHRN 532          
BLAST of jgi.p|Trimin1|129722 vs. uniprot
Match: A0A7S3UW18_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UW18_HETAK)

HSP 1 Score: 77.8 bits (190), Expect = 8.780e-15
Identity = 41/90 (45.56%), Postives = 62/90 (68.89%), Query Frame = 1
Query:    1 AAALRRGALLCRENLLGSVKLLRKMEHTAAAVLELFPDLTLAVEEREPALAREFFATVRAWVGELYAAVKEVQQANHANAHAIRWVMSIS 270
            A+ LR+GA+LCR  +  + KLL+++EH ++A+LELF DL LAVEE EP LAR FF ++R WV EL  +V+  Q+ + ++   +  +M  S
Sbjct:   57 ASTLRQGAILCRGQMRENDKLLKRIEHISSAILELFGDLELAVEENEPELARGFFESLRKWVSELGKSVRNAQKTHKSSTQEVHDLMEKS 146          
BLAST of jgi.p|Trimin1|129722 vs. uniprot
Match: W7TGE4_9STRA (Calcium calmodulin-dependent protein kinase 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGE4_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 7.770e-14
Identity = 33/55 (60.00%), Postives = 46/55 (83.64%), Query Frame = 1
Query:   13 RRGALLCRENLLGSVKLLRKMEHTAAAVLELFPDLTLAVEEREPALAREFFATVR 177
            +R A+LCR  L+ ++KLL+K+E TAA+VLE+FPDL LA+E+ EP+LA +FF TVR
Sbjct:   42 KRSAILCRAQLIYTIKLLKKIEQTAASVLEMFPDLELAIEDDEPSLAHDFFETVR 96          
BLAST of jgi.p|Trimin1|129722 vs. uniprot
Match: A0A7S1UJ38_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJ38_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.830e-12
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    1 AAALRRGALLCRENLLGSVKLLRKMEHTAAAVLELFPDLTLAVEEREPALAREFFATVRAWVGELYAAVKEVQQAN 228
            AA +RR A++CR   + S  LLR+++ TA +VL+L PDL LAV E+EP LA EFF+TVR WV  L   +  VQ  N
Sbjct:  419 AAEVRRSAIICRTAQVESAALLRRVQQTADSVLDLIPDLELAVREQEPELAMEFFSTVRTWVQRLTDEITRVQGEN 494          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129722 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A836CDN4_9STRA9.060e-54100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YMG0_9STRA1.540e-3484.21Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D7G8N3_ECTSI4.080e-2166.25Calcium/ calmodulin-dependent protein kinase 1 n=1... [more]
A0A6H5L327_9PHAE1.380e-2065.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3XQ85_HETAK1.980e-1950.57Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3HNC2_9STRA2.800e-1853.33Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A4D9CU84_9STRA7.420e-1655.56Protein kinase domain-containing protein n=1 Tax=N... [more]
A0A7S3UW18_HETAK8.780e-1545.56Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TGE4_9STRA7.770e-1460.00Calcium calmodulin-dependent protein kinase 1 n=1 ... [more]
A0A7S1UJ38_9STRA1.830e-1251.32Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_4contigContig_4:993604..993873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|129722|gw1.4.19.1
BRITEko00000,ko00001,ko01000,ko01001
KEGG Pathwayko04020,ko04024,ko04211,ko04371,ko04380,ko04720,ko04722,ko04725,ko04921,ko04925,ko05031,ko05034,map04020,map04024,map04211,map04371,map04380,map04720,map04722,map04725,map04921,map04925,map05031,map05034
KEGG koko:K05869
EC2.7.11.17
Descriptionprotein serine/threonine kinase activity
COG categoryT
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota
Evalue6.68e-22
Seed ortholog2880.D7G8N3
Hectar predicted targeting categoryother localisation
TranscriptId130044
TrackFilteredModels1
ProteinId129722
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129722gene_1641Tribonema minus UTEX_B_3156 geneContig_4 993604..993873 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1641_1exon_1641_1Tribonema minus UTEX_B_3156 exonContig_4 993604..993873 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1641CDS_1641Tribonema minus UTEX_B_3156 CDSContig_4 993604..993873 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129722Trimin1|129722|gw1.4.19.1Tribonema minus UTEX_B_3156 polypeptideContig_4 993604..993873 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1641 ID=mRNA_1641|Name=jgi.p|Trimin1|129722|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=270bp|location=Sequence derived from alignment at Contig_4:993604..993873+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGGCGGCGCTGCGGCGCGGCGCGCTGCTGTGCCGCGAGAACCTCCTCGG
CAGCGTCAAGCTGCTGCGGAAGATGGAGCACACCGCCGCGGCGGTGCTCG
AGCTGTTCCCGGATCTGACGCTGGCAGTGGAGGAGCGCGAGCCGGCGCTC
GCGCGCGAGTTCTTTGCAACGGTGCGCGCGTGGGTCGGCGAGCTGTACGC
AGCTGTCAAGGAGGTGCAGCAGGCAAACCATGCTAACGCGCATGCGATAA
GGTGGGTCATGAGCATCAGC
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protein sequence of jgi.p|Trimin1|129722

>Trimin1|129722|gw1.4.19.1 ID=Trimin1|129722|gw1.4.19.1|Name=jgi.p|Trimin1|129722|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=90bp
AAALRRGALLCRENLLGSVKLLRKMEHTAAAVLELFPDLTLAVEEREPAL
AREFFATVRAWVGELYAAVKEVQQANHANAHAIRWVMSIS
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mRNA from alignment at Contig_4:993604..993873+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1641 ID=mRNA_1641|Name=jgi.p|Trimin1|129722|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=270bp|location=Sequence derived from alignment at Contig_4:993604..993873+ (Tribonema minus UTEX_B_3156 )
GCGGCGGCGCTGCGGCGCGGCGCGCTGCTGTGCCGCGAGAACCTCCTCGG CAGCGTCAAGCTGCTGCGGAAGATGGAGCACACCGCCGCGGCGGTGCTCG AGCTGTTCCCGGATCTGACGCTGGCAGTGGAGGAGCGCGAGCCGGCGCTC GCGCGCGAGTTCTTTGCAACGGTGCGCGCGTGGGTCGGCGAGCTGTACGC AGCTGTCAAGGAGGTGCAGCAGGCAAACCATGCTAACGCGCATGCGATAA GGTGGGTCATGAGCATCAGC
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Coding sequence (CDS) from alignment at Contig_4:993604..993873+

>mRNA_1641 ID=mRNA_1641|Name=jgi.p|Trimin1|129722|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=270bp|location=Sequence derived from alignment at Contig_4:993604..993873+ (Tribonema minus UTEX_B_3156 )
GCGGCGGCGCTGCGGCGCGGCGCGCTGCTGTGCCGCGAGAACCTCCTCGG
CAGCGTCAAGCTGCTGCGGAAGATGGAGCACACCGCCGCGGCGGTGCTCG
AGCTGTTCCCGGATCTGACGCTGGCAGTGGAGGAGCGCGAGCCGGCGCTC
GCGCGCGAGTTCTTTGCAACGGTGCGCGCGTGGGTCGGCGAGCTGTACGC
AGCTGTCAAGGAGGTGCAGCAGGCAAACCATGCTAACGCGCATGCGATAA
GGTGGGTCATGAGCATCAGC
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