mRNA_9168 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|349204
Unique Name	mRNA_9168
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|349204 vs. uniprot
Match: A0A836CCM5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCM5_9STRA)

HSP 1 Score: 494 bits (1271), Expect = 7.390e-171
Identity = 422/422 (100.00%), Postives = 422/422 (100.00%), Query Frame = 1

Query:    1 MQEKTSEPTAADTNAXXXXXXXXXXXXXXXXXXGVKAGPTQGEAQGPTXXXXXXXXXXXXPKPTTAGGDSTKAPEAGAPGPDGSPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAPDITVDWAAYAAANIGGEVAGPDLAAVTQSVTATLESAANRPCIHPLSQPLTCLDSALNGDATVAIVYPRDDLSVPWHYAARAQLYTAPDAAATTANAVCLLDDNGGGGAQADMLSTATCGDRLATGGDAESQWLLVAIGQSGSDTPLNPPPLTAGPQPLFRMVSVARINAQDPNACLQVAAPLITADGGSVGYYVGLGGCVGPESLWYLSADSGDAARGV 1266
            MQEKTSEPTAADTNAXXXXXXXXXXXXXXXXXXGVKAGPTQGEAQGPTXXXXXXXXXXXXPKPTTAGGDSTKAPEAGAPGPDGSPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAPDITVDWAAYAAANIGGEVAGPDLAAVTQSVTATLESAANRPCIHPLSQPLTCLDSALNGDATVAIVYPRDDLSVPWHYAARAQLYTAPDAAATTANAVCLLDDNGGGGAQADMLSTATCGDRLATGGDAESQWLLVAIGQSGSDTPLNPPPLTAGPQPLFRMVSVARINAQDPNACLQVAAPLITADGGSVGYYVGLGGCVGPESLWYLSADSGDAARGV
Sbjct:    1 MQEKTSEPTAADTNAXXXXXXXXXXXXXXXXXXGVKAGPTQGEAQGPTXXXXXXXXXXXXPKPTTAGGDSTKAPEAGAPGPDGSPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAPDITVDWAAYAAANIGGEVAGPDLAAVTQSVTATLESAANRPCIHPLSQPLTCLDSALNGDATVAIVYPRDDLSVPWHYAARAQLYTAPDAAATTANAVCLLDDNGGGGAQADMLSTATCGDRLATGGDAESQWLLVAIGQSGSDTPLNPPPLTAGPQPLFRMVSVARINAQDPNACLQVAAPLITADGGSVGYYVGLGGCVGPESLWYLSADSGDAARGV 422

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349204 vs. uniprot

BLAST of jgi.p|Trimin1|349204 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CCM5_9STRA	7.390e-171	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_39	contig	Contig_39:86088..89925 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|349204\|estExt_Genemark1.C_Ctg_390008
Hectar predicted targeting category	other localisation
TranscriptId	349526
Track	FilteredModels1
ProteinId	349204

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349204	gene_9168	Tribonema minus UTEX_B_3156	gene	Contig_39 86088..89925 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_9168_1	exon_9168_1	Tribonema minus UTEX_B_3156	exon	Contig_39 86088..86375 +
exon_9168_2	exon_9168_2	Tribonema minus UTEX_B_3156	exon	Contig_39 87293..87599 +
exon_9168_3	exon_9168_3	Tribonema minus UTEX_B_3156	exon	Contig_39 89252..89925 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_9168	CDS_9168	Tribonema minus UTEX_B_3156	CDS	Contig_39 86088..86375 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349204	Trimin1\|349204\|estExt_Genemark1.C_Ctg_390008	Tribonema minus UTEX_B_3156	polypeptide	Contig_39 86088..89925 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_39:86088..89925+
coding sequence from alignment at Contig_39:86088..89925+

spliced messenger RNA

>mRNA_9168 ID=mRNA_9168|Name=jgi.p|Trimin1|349204|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1269bp|location=Sequence derived from alignment at Contig_39:86088..89925+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGAAAAGACCTCAGAGCCTACCGCTGCTGACACAAATGCGCCAAC
AGCTAAACCGACGAAGGATGGGAGCTCGAAGCCTACGGCAGCACCGACAG
GCGTGAAAGCGGGCCCGACTCAGGGGGAGGCACAGGGGCCCACTGATGCC
CCCACTGCCAAACCTACTGGTGACAAGACGCCGAAGCCTACGACAGCAGG
GGGGGATAGCACTAAGGCGCCAGAGGCAGGCGCTCCTGGGCCTGATGGTT
CGCCAACCGCAGAGCCCACTTCGGAGCCAACTATCAAGCCTACCGAAGCG
GACCCCACTGCAGCCCCCACGCACAAACCCACCACGACCAGGGCACCCAC
AGTAAAGCCGACTGCAGAGAAAACTCCTCGGCCGACTGACGCTCCCACTG
CCGAGCCTACCGGTGAGCCAACGACCAAACCTACTGCTGAGCCAACGTCC
AAGCCTTCGCGAGCGCCTACTAAGAGGACGACTTTGGAGCCTACGCCAGC
ACCCACACCAGCACCTACGCCGGCACCTACTGTAACGCCGACGACGGCGG
CGCCTACGGCAGAGCCTACCGTGCCCCCAACGCTGGCGCCGACAGCATTC
GCGCCAGACATCACCGTCGACTGGGCCGCCTACGCCGCCGCCAACATCGG
CGGCGAAGTCGCGGGCCCCGACTTGGCGGCAGTTACGCAGAGCGTAACCG
CCACGCTCGAGTCCGCGGCGAACCGCCCCTGCATCCACCCCCTCTCGCAG
CCGCTGACGTGCCTCGACTCTGCACTCAACGGTGACGCCACGGTCGCTAT
CGTCTACCCGCGCGACGATCTGTCGGTGCCGTGGCACTACGCCGCACGCG
CGCAGCTCTACACCGCGCCCGACGCCGCCGCCACTACCGCTAATGCTGTC
TGTTTACTAGATGACAACGGCGGCGGCGGCGCGCAGGCAGACATGCTGAG
CACTGCTACGTGCGGCGACCGTCTCGCCACCGGCGGCGATGCAGAGTCGC
AGTGGCTGCTGGTGGCGATCGGGCAGAGCGGCTCGGACACCCCCCTCAAC
CCCCCGCCCCTCACGGCGGGCCCGCAGCCGCTGTTCCGCATGGTCTCTGT
GGCGCGTATCAATGCTCAGGATCCGAATGCGTGCCTGCAGGTTGCAGCAC
CGCTCATCACGGCGGACGGGGGGTCAGTGGGGTATTATGTGGGGCTGGGG
GGGTGCGTCGGGCCGGAGAGTTTGTGGTATCTGAGCGCGGATAGCGGGGA
CGCGGCGAGGGGCGTTTGA

protein sequence of jgi.p|Trimin1|349204

>Trimin1|349204|estExt_Genemark1.C_Ctg_390008 ID=Trimin1|349204|estExt_Genemark1.C_Ctg_390008|Name=jgi.p|Trimin1|349204|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=423bp
MQEKTSEPTAADTNAPTAKPTKDGSSKPTAAPTGVKAGPTQGEAQGPTDA
PTAKPTGDKTPKPTTAGGDSTKAPEAGAPGPDGSPTAEPTSEPTIKPTEA
DPTAAPTHKPTTTRAPTVKPTAEKTPRPTDAPTAEPTGEPTTKPTAEPTS
KPSRAPTKRTTLEPTPAPTPAPTPAPTVTPTTAAPTAEPTVPPTLAPTAF
APDITVDWAAYAAANIGGEVAGPDLAAVTQSVTATLESAANRPCIHPLSQ
PLTCLDSALNGDATVAIVYPRDDLSVPWHYAARAQLYTAPDAAATTANAV
CLLDDNGGGGAQADMLSTATCGDRLATGGDAESQWLLVAIGQSGSDTPLN
PPPLTAGPQPLFRMVSVARINAQDPNACLQVAAPLITADGGSVGYYVGLG
GCVGPESLWYLSADSGDAARGV*

mRNA from alignment at Contig_39:86088..89925+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9168 ID=mRNA_9168|Name=jgi.p|Trimin1|349204|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3838bp|location=Sequence derived from alignment at Contig_39:86088..89925+ (Tribonema minus UTEX_B_3156 )
ATGCAAGAAAAGACCTCAGAGCCTACCGCTGCTGACACAAATGCGCCAAC
AGCTAAACCGACGAAGGATGGGAGCTCGAAGCCTACGGCAGCACCGACAG
GCGTGAAAGCGGGCCCGACTCAGGGGGAGGCACAGGGGCCCACTGATGCC
CCCACTGCCAAACCTACTGGTGACAAGACGCCGAAGCCTACGACAGCAGG
GGGGGATAGCACTAAGGCGCCAGAGGCAGGCGCTCCTGGGCCTGATGGTT
CGCCAACCGCAGAGCCCACTTCGGAGCCAACTATCAAGGTGCGACAACAA
ATACTGTTTGTCTTGCTGAAAGGGGTACTTGCACCTGTTGAAAAGGGCAC
TAGAACTGGGCCGACTGCTACGGTGCGACAAAGGCTGTTGGATGTGTCAT
AAGGGGTACTTTTCACTTGTTGAAAAGGGCTCTAGAACTAGGCGCCGACT
GCTAAGATGCGACAAAAAGAGTGTTTGTCGTGTTGAGAAGGGTACTTTCC
ACTTGCTGAAAAGGGTAGAGTTTGAACTAGAGTTGTGGTTATGTCAGGGT
TTAGGGTTCATGCAGGTGTGGCGTGGCATGGAGCAAGGACTGGGCGGTTT
TTGTTTTTGCACATGATACCAGCGTTTGGGTTGGGGCGTAGACTCAGGGG
TAGAATTGCTGACGACATTGCTGTACGCTGTATGATTGGGCATGCTGCGG
CTGAGACAAGAGAGGGGCTGGAGGTTAGGGTGAGGGTCAGGGTCAGTGTA
TGTACTATGTAGACTGTCTATGTACAGTGACTTCTGCACTTCTCTGCACG
TGAGGCTGTGACAAGCGAGGCGCTGGAATTTAGGGTAAGTGTCATTGTAC
TGTGTGTAGTGTACTATGTACTCTTCGCACGCCGAGGTTGTGACTAGCTG
GAAAGACATGTCGGCATTCAGCAGCAGTGCTCATCGTCAAGTGGTGGGTG
CGTCTCTTGAAGTTCTCATTTGAAGTCTCGCTATCGGACTGAAGGCGCTG
TGCACATGATCAAGACTGGTATGGTAAGCATAACGCGTCTCGTTGTTCAT
CCCATGACAATGACTCTGCATTCAGATGTCAGGCATTTGATTGTCCTTGA
TCTGCATCAACACCTTCAGCCTCCAGATGTGAGTGCTCCCATATTGAACT
CAAATACGCACTCAACTTGAACTCACATCGAACGCTCGCGTCTCTCCTCT
CACAGCCTACCGAAGCGGACCCCACTGCAGCCCCCACGCACAAACCCACC
ACGACCAGGGCACCCACAGTAAAGCCGACTGCAGAGAAAACTCCTCGGCC
GACTGACGCTCCCACTGCCGAGCCTACCGGTGAGCCAACGACCAAACCTA
CTGCTGAGCCAACGTCCAAGCCTTCGCGAGCGCCTACTAAGAGGACGACT
TTGGAGCCTACGCCAGCACCCACACCAGCACCTACGCCGGCACCTACTGT
AACGCCGACGACGGCGGCGCCTACGGCAGAGCCTACCGTGCCCCCAACGC
TGGCGCCGACAGGTGTGTGACAGCGTAGATTGGTGACTTGATGGTGCCTG
GGGATAGGGTTAGTGAGGATTAATGTCAGGCGCAGGGTGATGATTATGAT
TGAGGTCAGGAGCAGGGTTGACGTTTGCCTTGGCAGCGGAGCTTACAGCG
CAACATAGACCGTGCTAATGCTGACAGGTCTCATCATGGTCTGGTAAACT
TGCTGGTGCTCTCTGCGGTCAAAGCAGAGATGCCCCGTACTGCCATCATC
GCACCAGTCGCGCGTAGCGCGAGAAAAATTTTAACCGGTACCGGTACCAG
TACTCAATAACTGGTACCAGCAGCTACCCGTACCAGTTTAACTGATGCGC
TGTGACAACCGGTACCAGTATACTGGTGAAACCGGTAAAAGCTGGTCTGA
CCGGTTTTCACCTGTGGTACCAGTTTTTTACTAGTAATGCCAGTGCTTTT
CTTATATGCATAGCATACGTAGTATACCGTGCGATCAGTACATACAACTA
CAACGGCTTCAGGAATAATGCTTGTCAGGAGCTCGAGGATTCTAGGTTAT
GCAGCCGAATGGACCCAAGTGCATAGTGCGCAGCTCAAAGCCTTACCCAC
AGCATACTAACGCAGTATTTGCTCCTGTAAGTGACATTCAAAGTGCACCC
GTCACGATGCAAAGGCAGTCAGCAACATGTGTGCAGCATGCAGCCAGCCA
AAGGATGGGCAGCATGCTCATATATCATTCTGGCTGCTGCCACCTGTTTC
GACTTTCGCTCTGCAATTGGCACCCTTGCACTTGTGGATCAGCAAACAAC
CTCTATCATATGTGTAACCAGGTTTTTGTGTTTACGCAGCTGAAGCTTGA
GCCTTTCGTTGGCTGCAACAGCGCATCAGAAGCGGAAACAATCCGATCCG
GGAGTTGCGTTCCTCAAAATGAATGCATCGCGTCCCACGTCGGTTGATGG
ATGCTTATGCTTTACATCCCACCTGCTATCTCAGCCTGCAGAAGCTGCTT
GTGCATTCAGCGACATCAAACAGTCGCGCATCCATGAAATCGGACACCTG
TGTTCGATTTTTGGGCCACATGGACCGCTTGCATGCCATCACTAGCCGAA
CCCATATGTCAACAGCAGCATCAGTAGGTCGACTCACGACCATATCTGCC
AGTATACACCGTCCATTACACCTGTCGTCGTGTGGGTCCCGCGCTGGACT
AACTTCAAGGCACGAAAAGAATAAACTCGCTAAAACGGTCTACTTGCAAT
TTAACTGGTGGCGCCGGTCATCAGCTACGGCATCGGTACGTGTTTACGGG
TTGCCTCACGCGGCCAGTTACCCGTACCGGTTAGTGAGCGGCAACCAGTT
ACTGGTTAAAACTGGTACAAAAACTGGTACGGGTACCGGTGCTACCAGTC
AACGGGGCATCTCTGGGTCAAAGCGGTTGTGGACTTGCTTAGGGTTAGAG
TTAGGGTTGTGTGGCATGCGCGCTGCGGACAGCGCGACAAATGCAATTGG
AAGCAGGTGTTCACTGGAGCGATCCTTCGAAAAACATGCTGCCATATGCT
TCCCATCACCTGTGCGTTCATGAGTCAAGCCGTAACCCTTCCTACCATAC
CTCAGTTCTCGTGCCCCCCACCCCCCCTAACTAAATTCAATCCCATATCT
CCCCCCCTTTGCAGCATTCGCGCCAGACATCACCGTCGACTGGGCCGCCT
ACGCCGCCGCCAACATCGGCGGCGAAGTCGCGGGCCCCGACTTGGCGGCA
GTTACGCAGAGCGTAACCGCCACGCTCGAGTCCGCGGCGAACCGCCCCTG
CATCCACCCCCTCTCGCAGCCGCTGACGTGCCTCGACTCTGCACTCAACG
GTGACGCCACGGTCGCTATCGTCTACCCGCGCGACGATCTGTCGGTGCCG
TGGCACTACGCCGCACGCGCGCAGCTCTACACCGCGCCCGACGCCGCCGC
CACTACCGCTAATGCTGTCTGTTTACTAGATGACAACGGCGGCGGCGGCG
CGCAGGCAGACATGCTGAGCACTGCTACGTGCGGCGACCGTCTCGCCACC
GGCGGCGATGCAGAGTCGCAGTGGCTGCTGGTGGCGATCGGGCAGAGCGG
CTCGGACACCCCCCTCAACCCCCCGCCCCTCACGGCGGGCCCGCAGCCGC
TGTTCCGCATGGTCTCTGTGGCGCGTATCAATGCTCAGGATCCGAATGCG
TGCCTGCAGGTTGCAGCACCGCTCATCACGGCGGACGGGGGGTCAGTGGG
GTATTATGTGGGGCTGGGGGGGTGCGTCGGGCCGGAGAGTTTGTGGTATC
TGAGCGCGGATAGCGGGGACGCGGCGAGGGGCGTTTGA

Coding sequence (CDS) from alignment at Contig_39:86088..89925+

>mRNA_9168 ID=mRNA_9168|Name=jgi.p|Trimin1|349204|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1269bp|location=Sequence derived from alignment at Contig_39:86088..89925+ (Tribonema minus UTEX_B_3156 )
ATGCAAGAAAAGACCTCAGAGCCTACCGCTGCTGACACAAATGCGCCAAC
AGCTAAACCGACGAAGGATGGGAGCTCGAAGCCTACGGCAGCACCGACAG
GCGTGAAAGCGGGCCCGACTCAGGGGGAGGCACAGGGGCCCACTGATGCC
CCCACTGCCAAACCTACTGGTGACAAGACGCCGAAGCCTACGACAGCAGG
GGGGGATAGCACTAAGGCGCCAGAGGCAGGCGCTCCTGGGCCTGATGGTT
CGCCAACCGCAGAGCCCACTTCGGAGCCAACTATCAAGCCTACCGAAGCG
GACCCCACTGCAGCCCCCACGCACAAACCCACCACGACCAGGGCACCCAC
AGTAAAGCCGACTGCAGAGAAAACTCCTCGGCCGACTGACGCTCCCACTG
CCGAGCCTACCGGTGAGCCAACGACCAAACCTACTGCTGAGCCAACGTCC
AAGCCTTCGCGAGCGCCTACTAAGAGGACGACTTTGGAGCCTACGCCAGC
ACCCACACCAGCACCTACGCCGGCACCTACTGTAACGCCGACGACGGCGG
CGCCTACGGCAGAGCCTACCGTGCCCCCAACGCTGGCGCCGACAGCATTC
GCGCCAGACATCACCGTCGACTGGGCCGCCTACGCCGCCGCCAACATCGG
CGGCGAAGTCGCGGGCCCCGACTTGGCGGCAGTTACGCAGAGCGTAACCG
CCACGCTCGAGTCCGCGGCGAACCGCCCCTGCATCCACCCCCTCTCGCAG
CCGCTGACGTGCCTCGACTCTGCACTCAACGGTGACGCCACGGTCGCTAT
CGTCTACCCGCGCGACGATCTGTCGGTGCCGTGGCACTACGCCGCACGCG
CGCAGCTCTACACCGCGCCCGACGCCGCCGCCACTACCGCTAATGCTGTC
TGTTTACTAGATGACAACGGCGGCGGCGGCGCGCAGGCAGACATGCTGAG
CACTGCTACGTGCGGCGACCGTCTCGCCACCGGCGGCGATGCAGAGTCGC
AGTGGCTGCTGGTGGCGATCGGGCAGAGCGGCTCGGACACCCCCCTCAAC
CCCCCGCCCCTCACGGCGGGCCCGCAGCCGCTGTTCCGCATGGTCTCTGT
GGCGCGTATCAATGCTCAGGATCCGAATGCGTGCCTGCAGGTTGCAGCAC
CGCTCATCACGGCGGACGGGGGGTCAGTGGGGTATTATGTGGGGCTGGGG
GGGTGCGTCGGGCCGGAGAGTTTGTGGTATCTGAGCGCGGATAGCGGGGA
CGCGGCGAGGGGCGTTTGA