mRNA_8370 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349099
Unique NamemRNA_8370
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|349099 vs. uniprot
Match: A0A836CDK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDK8_9STRA)

HSP 1 Score: 589 bits (1518), Expect = 7.140e-213
Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 1 
Query:    1 MTVRPFTSYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADNLKILDICETVRHVPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSRLFEQFPQFPDDAAARRESRDAVWGLLLVPPKLTATLPRFKPQPAFIRIDRFGMGELFPDLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGYQLGELTLTCSRSSDGEKPKPRIVKPTSGWLGEVEVGTL 861
            MTVRPFTSYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADNLKILDICETVRHVPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSRLFEQFPQFPDDAAARRESRDAVWGLLLVPPKLTATLPRFKPQPAFIRIDRFGMGELFPDLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGYQLGELTLTCSRSSDGEKPKPRIVKPTSGWLGEVEVGTL
Sbjct:    1 MTVRPFTSYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADNLKILDICETVRHVPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSRLFEQFPQFPDDAAARRESRDAVWGLLLVPPKLTATLPRFKPQPAFIRIDRFGMGELFPDLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGYQLGELTLTCSRSSDGEKPKPRIVKPTSGWLGEVEVGTL 287
[Close]
BLAST of jgi.p|Trimin1|349099 vs. uniprot
Match: A0A836CQS9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQS9_9STRA)

HSP 1 Score: 464 bits (1195), Expect = 1.250e-155
Identity = 236/276 (85.51%), Postives = 243/276 (88.04%), Query Frame = 1 
Query:    1 MTVRPFTS-----------YAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADNLKILDICETVRHVPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSRLFEQFPQFPDDAAARRESRDAVWGLLLVPPKLTATLPRFKPQPAFIRIDRFGMGELFPDLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGYQLGELTLTCSRSSDGE 795
            MTVRPFT            YAGNDLHGELQARLNQLGFRGAELDDDGDVQEGAD LKILDICETVRH+PDGDSDASKRRLLAQLQQLYVETDRTDYQDLMS LFE   QFPDDAAARRE+RDAVWGLL VPPKLTA LPRFKPQPAFIRIDR GMGELF  LAARMAGRGPWWYAEFMQPWAKAAN TTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLV+SHD HQGPHGLT+LPRRGYQ+G +        +GE
Sbjct:  461 MTVRPFTRAVHDLAELVTIYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADYLKILDICETVRHLPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSELFE---QFPDDAAARRENRDAVWGLLPVPPKLTAPLPRFKPQPAFIRIDRTGMGELFSGLAARMAGRGPWWYAEFMQPWAKAANSTTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVSSHDLHQGPHGLTKLPRRGYQVGYINEELGDVLEGE 733
[Close]
BLAST of jgi.p|Trimin1|349099 vs. uniprot
Match: A0A836CNV6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNV6_9STRA)

HSP 1 Score: 471 bits (1212), Expect = 9.680e-152
Identity = 238/276 (86.23%), Postives = 247/276 (89.49%), Query Frame = 1 
Query:    1 MTVRPFT-----------SYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADNLKILDICETVRHVPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSRLFEQFPQFPDDAAARRESRDAVWGLLLVPPKLTATLPRFKPQPAFIRIDRFGMGELFPDLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGYQLGELTLTCSRSSDGE 795
            MTVRPFT           +YAGNDLHGELQARLNQLGFRGAELDDDGDVQEGAD LKILDICETVRH+PDGDSDASKRRLLAQLQQLYVETDRTDYQDLMS LFE   QFPDDAAARRE+RDAVWGLL VPPKLTA +PRFKPQPAFIRIDR GMGELFP LAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLV+SHDSHQGPHGLT+LPRRGYQ+G +        +GE
Sbjct:  973 MTVRPFTRAVHDLAELVTTYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADYLKILDICETVRHLPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSGLFE---QFPDDAAARRENRDAVWGLLPVPPKLTAPVPRFKPQPAFIRIDRTGMGELFPGLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVSSHDSHQGPHGLTKLPRRGYQVGYINEELGDVLEGE 1245
[Close]
BLAST of jgi.p|Trimin1|349099 vs. uniprot
Match: A0A835ZFR8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFR8_9STRA)

HSP 1 Score: 452 bits (1164), Expect = 5.290e-151
Identity = 228/259 (88.03%), Postives = 237/259 (91.51%), Query Frame = 1 
Query:   19 TSYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADNLKILDICETVRHVPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSRLFEQFPQFPDDAAARRESRDAVWGLLLVPPKLTATLPRFKPQPAFIRIDRFGMGELFPDLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGYQLGELTLTCSRSSDGE 795
            T+YAGNDLHGELQARLNQLGFR AELDDD  VQEGAD LKILDICETVRH+PDG+SDASKRRLLAQLQQLYVETDRTDYQDLMS LFE   QFPDDAAARRE+RDAVWGLL VPPKLTA LPRFKPQPAFIRIDR GMGELFP LAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRIL+PWLVDRTFMTDGHQL+LLLVTSH SHQGPHGLTELPRRGYQ+G +        +GE
Sbjct:  217 TTYAGNDLHGELQARLNQLGFRYAELDDDRYVQEGADYLKILDICETVRHLPDGNSDASKRRLLAQLQQLYVETDRTDYQDLMSGLFE---QFPDDAAARRENRDAVWGLLPVPPKLTAPLPRFKPQPAFIRIDRTGMGELFPGLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILSPWLVDRTFMTDGHQLELLLVTSHVSHQGPHGLTELPRRGYQVGFINEELGDVLEGE 472
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BLAST of jgi.p|Trimin1|349099 vs. uniprot
Match: A0A835YXL0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXL0_9STRA)

HSP 1 Score: 448 bits (1153), Expect = 8.700e-150
Identity = 228/261 (87.36%), Postives = 235/261 (90.04%), Query Frame = 1 
Query:    1 MTVRPFT-----------SYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADNLKILDICETVRHVPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSRLFEQFPQFPDDAAARRESRDAVWGLLLVPPKLTATLPRFKPQPAFIRIDRFGMGELFPDLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGYQ 750
            MTVRPFT           +YAGNDLHG LQARLNQLGFRGAELDDDGDVQEGAD+LKILDICETVRH+PDGDSD+SKRRLLAQLQQLYVETDRTDYQDLMS LFE   QFPDDA ARRE RDAVWGLL VPPKLTA LPRFKPQPAFIRI+R GMGELF  LAARMAGRGPWW A+FMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRT MTDGHQLKLL VTSHDSHQGPHGLT+LPRRGYQ
Sbjct:  174 MTVRPFTRAVHDLAELVTTYAGNDLHGGLQARLNQLGFRGAELDDDGDVQEGADHLKILDICETVRHLPDGDSDSSKRRLLAQLQQLYVETDRTDYQDLMSGLFE---QFPDDATARREHRDAVWGLLPVPPKLTAPLPRFKPQPAFIRINRTGMGELFSGLAARMAGRGPWWCAKFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTVMTDGHQLKLLPVTSHDSHQGPHGLTKLPRRGYQ 431
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BLAST of jgi.p|Trimin1|349099 vs. uniprot
Match: A0A835YWJ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWJ2_9STRA)

HSP 1 Score: 458 bits (1179), Expect = 3.510e-149
Identity = 234/276 (84.78%), Postives = 242/276 (87.68%), Query Frame = 1 
Query:    1 MTVRPFT-----------SYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADNLKILDICETVRHVPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSRLFEQFPQFPDDAAARRESRDAVWGLLLVPPKLTATLPRFKPQPAFIRIDRFGMGELFPDLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGYQLGELTLTCSRSSDGE 795
            MTVRP T           +YAGNDLHGELQARLNQLGFRGAELDDDGDVQEGAD LKILDICETVRH+PDGDSDASKRR LAQLQQLYVETDR DYQDLMS LFE   QFPDDAAARRE+RDAVWGLL V PKLTA LPRFKPQPAFIRIDR G+GELFP LAA MAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRG+Q+G +        +GE
Sbjct:  230 MTVRPLTRAVHDLAELVTTYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADYLKILDICETVRHLPDGDSDASKRRHLAQLQQLYVETDRADYQDLMSGLFE---QFPDDAAARRENRDAVWGLLPVLPKLTAPLPRFKPQPAFIRIDRTGLGELFPGLAAWMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGHQVGYINEELGDVLEGE 502
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BLAST of jgi.p|Trimin1|349099 vs. uniprot
Match: A0A835YJ56_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ56_9STRA)

HSP 1 Score: 466 bits (1200), Expect = 4.540e-148
Identity = 236/276 (85.51%), Postives = 244/276 (88.41%), Query Frame = 1 
Query:    1 MTVRPFT-----------SYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADNLKILDICETVRHVPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSRLFEQFPQFPDDAAARRESRDAVWGLLLVPPKLTATLPRFKPQPAFIRIDRFGMGELFPDLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGYQLGELTLTCSRSSDGE 795
            MTVRPFT           +YAGNDLHGE QARLNQLGFRGAELDDDGDVQEGAD LKILDICETVRH+PDGDSDASK RLLAQLQQLYVETDRTDYQ+LMS LFE   QFPDDAAARRE+RDAVWGLL VPPKLTA LPRFKPQPAFIRIDR GMGELFP LAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERA QPGYR+LAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGYQ+G +        +GE
Sbjct:  507 MTVRPFTRAVHDLAELVTTYAGNDLHGEPQARLNQLGFRGAELDDDGDVQEGADYLKILDICETVRHLPDGDSDASKHRLLAQLQQLYVETDRTDYQELMSGLFE---QFPDDAAARRENRDAVWGLLPVPPKLTAPLPRFKPQPAFIRIDRTGMGELFPGLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERASQPGYRVLAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGYQVGYINEELGDVLEGE 779
[Close]
BLAST of jgi.p|Trimin1|349099 vs. uniprot
Match: A0A835ZEL6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEL6_9STRA)

HSP 1 Score: 414 bits (1064), Expect = 5.710e-136
Identity = 217/280 (77.50%), Postives = 231/280 (82.50%), Query Frame = 1 
Query:    1 MTVRPFT-----------SYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADNLKILDICETVRHVPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSRLFEQFPQFPDDAAARRESRDAVWGLLLVPPKLTATLPRFKPQPAFIRIDRFGMGELFPDLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLV----------TSHDSHQGPHGLTELPRRGYQLGELTLTCS 777
            MTVRPFT           +YAGNDLHGELQARL+QLGFRGAELDDDGDVQEGAD LKILDICETVRH+PDGDSDASKRRLLAQ QQLYVETDRTDYQ+LMS LFE   QFP+DAAARRE+ DAVWGLL VPPKLTA LPRFKPQPAFIRIDR GMGELFP LAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRIL PWLVD+TFMTDGHQLKLLLV             +  +GP+G+  L R   ++G    T +
Sbjct:  155 MTVRPFTRAVHDLAELVTTYAGNDLHGELQARLDQLGFRGAELDDDGDVQEGADYLKILDICETVRHLPDGDSDASKRRLLAQPQQLYVETDRTDYQELMSGLFE---QFPNDAAARRENTDAVWGLLPVPPKLTAPLPRFKPQPAFIRIDRTGMGELFPGLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILPPWLVDKTFMTDGHQLKLLLVGYINEELGDVLEGEVAEGPNGVFRLQRVHREIGAEPATVA 431
[Close]
BLAST of jgi.p|Trimin1|349099 vs. uniprot
Match: A0A836CAT6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAT6_9STRA)

HSP 1 Score: 392 bits (1008), Expect = 3.710e-134
Identity = 203/250 (81.20%), Postives = 214/250 (85.60%), Query Frame = 1 
Query:   19 TSYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADNLKILDICETVRHVPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSRLFEQFPQFPDDAAARRESRDAVWGLLLVPPKLTATLPRFK-PQPAFIRIDRFGMGELFPDLAARMAGRGPWWYAEFMQPWAKAANI-TTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGYQLGEL 762
            TSYAGN+LHGELQARLNQLGFRGAELDDDGDVQEGAD LKILDIC TVRH+PDGD+DASKRR LAQLQQLYVET+RTDY +LMS LFE   Q P DAAARRE+RD+VWG L VPPKLTA LP  + P     R     MG L P LAARMAGRGPWWYAEFMQPWAKAANI TTMRQRTNHYARSER VMRAIERAGQP YRILAPWLVDRTFMTD HQLKLL+VTSHDSHQGPHGLT LPR GYQ+G +
Sbjct:   24 TSYAGNELHGELQARLNQLGFRGAELDDDGDVQEGADYLKILDICVTVRHLPDGDNDASKRRFLAQLQQLYVETERTDYLELMSGLFE---QSPGDAAARRENRDSVWGQLPVPPKLTAPLPPLQAPAGVHPRPPGTAMGRLVPGLAARMAGRGPWWYAEFMQPWAKAANIITTMRQRTNHYARSERSVMRAIERAGQPRYRILAPWLVDRTFMTDSHQLKLLMVTSHDSHQGPHGLTNLPRTGYQVGYI 270
[Close]
BLAST of jgi.p|Trimin1|349099 vs. uniprot
Match: A0A835Z8U0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8U0_9STRA)

HSP 1 Score: 405 bits (1040), Expect = 2.240e-132
Identity = 208/263 (79.09%), Postives = 222/263 (84.41%), Query Frame = 1 
Query:   19 TSYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADNLKILDICETVRHVPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSRLFEQFPQFPDDAAARRESRDAVWGLLLVPPKLTATLPRFKPQPAFIRIDRFGMGELFPDLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLV----------TSHDSHQGPHGLTELPRRGYQLGELTLTCS 777
            T+YAGNDLHGELQARLNQLGFRGAELDDDGDVQEGA+ L ILDICETVRH+PDGDSDASKRRLLAQLQQLYVETD TDYQDLMS LF    Q+PDD AARRE+RDAVWGLL VPPKLT  LPRFKPQPAFIRIDR GMG+LFP LAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGV+RA ERAGQPGYRILAPWLVDRTFMTDGHQLKLLLV             +  +GP+G+  L R   ++G    T +
Sbjct:  282 TTYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGANCLMILDICETVRHLPDGDSDASKRRLLAQLQQLYVETDCTDYQDLMSELF---GQYPDDTAARRENRDAVWGLLPVPPKLTVPLPRFKPQPAFIRIDRTGMGQLFPGLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVVRANERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVGYINEELGDVLEGEVAEGPNGVLRLQRVHREIGAEPATVA 541
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349099 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CDK8_9STRA7.140e-213100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CQS9_9STRA1.250e-15585.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CNV6_9STRA9.680e-15286.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZFR8_9STRA5.290e-15188.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YXL0_9STRA8.700e-15087.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YWJ2_9STRA3.510e-14984.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YJ56_9STRA4.540e-14885.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZEL6_9STRA5.710e-13677.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CAT6_9STRA3.710e-13481.20Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z8U0_9STRA2.240e-13279.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_36contigContig_36:343774..349731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349099|estExt_Genemark1.C_Ctg_360033
Hectar predicted targeting categoryother localisation
TranscriptId349421
TrackFilteredModels1
ProteinId349099
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349099gene_8370Tribonema minus UTEX_B_3156 geneContig_36 343774..349731 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349099Trimin1|349099|estExt_Genemark1.C_Ctg_360033Tribonema minus UTEX_B_3156 polypeptideContig_36 343774..349731 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8370_1exon_8370_1Tribonema minus UTEX_B_3156 exonContig_36 343774..343796 +
exon_8370_2exon_8370_2Tribonema minus UTEX_B_3156 exonContig_36 344384..344785 +
exon_8370_3exon_8370_3Tribonema minus UTEX_B_3156 exonContig_36 345338..345662 +
exon_8370_4exon_8370_4Tribonema minus UTEX_B_3156 exonContig_36 348848..348910 +
exon_8370_5exon_8370_5Tribonema minus UTEX_B_3156 exonContig_36 349681..349731 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8370CDS_8370Tribonema minus UTEX_B_3156 CDSContig_36 343774..343796 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8370 ID=mRNA_8370|Name=jgi.p|Trimin1|349099|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=864bp|location=Sequence derived from alignment at Contig_36:343774..349731+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGTGCGCCCGTTCACCAGCTATGCCGGCAATGACCTGCACGGGGA
GCTGCAGGCACGCCTCAACCAGCTGGGCTTCAGGGGCGCAGAGCTGGACG
ATGACGGAGACGTGCAGGAGGGCGCCGATAACCTCAAGATCCTGGATATC
TGCGAGACGGTGCGCCACGTGCCCGACGGCGACAGCGACGCTAGCAAGCG
CCGGCTTTTGGCACAGCTGCAGCAGCTCTATGTGGAGACCGACCGCACAG
ACTACCAGGATCTGATGTCGAGGCTTTTTGAGCAGTTTCCTCAGTTTCCT
GACGATGCCGCAGCGCGCCGCGAGAGCAGGGACGCTGTGTGGGGTCTGCT
GCTGGTCCCTCCAAAGCTTACTGCCACCCTCCCCCGGTTCAAGCCCCAGC
CGGCGTTCATCCGCATCGACCGTTTCGGCATGGGCGAGCTGTTTCCAGAT
CTTGCTGCGCGGATGGCCGGCCGGGGCCCCTGGTGGTATGCTGAGTTCAT
GCAGCCATGGGCGAAGGCAGCCAACATCACCACCATGCGGCAGCGCACCA
ACCATTATGCGCGCAGCGAGCGCGGTGTGATGCGGGCAATTGAGCGCGCC
GGCCAACCGGGGTACCGCATCCTGGCCCCGTGGCTGGTGGACAGGACGTT
CATGACCGATGGGCACCAGCTCAAGCTTCTGCTGGTCACCAGCCACGACT
CGCACCAAGGCCCCCATGGCCTGACCGAGCTGCCGCGGAGGGGTTATCAG
CTTGGCGAGCTCACGCTCACGTGCTCGCGCAGCTCTGACGGCGAGAAACC
GAAGCCGCGCATTGTCAAGCCCACGAGCGGTTGGCTGGGGGAAGTGGAGG
TGGGTACACTGTAA
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protein sequence of jgi.p|Trimin1|349099

>Trimin1|349099|estExt_Genemark1.C_Ctg_360033 ID=Trimin1|349099|estExt_Genemark1.C_Ctg_360033|Name=jgi.p|Trimin1|349099|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=288bp
MTVRPFTSYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADNLKILDI
CETVRHVPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSRLFEQFPQFP
DDAAARRESRDAVWGLLLVPPKLTATLPRFKPQPAFIRIDRFGMGELFPD
LAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERA
GQPGYRILAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGYQ
LGELTLTCSRSSDGEKPKPRIVKPTSGWLGEVEVGTL*
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mRNA from alignment at Contig_36:343774..349731+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8370 ID=mRNA_8370|Name=jgi.p|Trimin1|349099|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5958bp|location=Sequence derived from alignment at Contig_36:343774..349731+ (Tribonema minus UTEX_B_3156 )
ATGACTGTGCGCCCGTTCACCAGGTGGGCGGCAGATGCTTTATTTCATGC
CTTGTACTTCGAAGTATTCACAAGGTACAATGTGCATACATTTGCAAGCA
GTTTCTGGAGCGGCTCGCATACTCTCATCAGCACTGCGAAGTGCATGTCA
TGCGGGTGTCTCAATGGCTCACGTTTCTGCTGTTTTTGTGGTGCACTACG
TTCGGCATGATGTAACCTGGACAGAGGGCTGGGTGCAGGCTGCACTCACG
CTTGCGCCAGCCCTGCTTGGCAGAGGTGGAAATGGCAGCAGGCAGCTGAT
TTTGCCATTGAGCGCAAGTGATAGTGGACAACTTCAACTTACTTGTTGGT
TCAGCCACACACGCTGCATGTATGTGCCTTGTTCTGTCCCTACATGCAAG
AAAGTTGATGTGTGATAGCCTGCTCAGAATACTCAACCCGCAGTCTGGGT
ATTCTTGACTTGGCCCTTCGGCCAGGCTTGGATGTGGTCTTCAAATACAA
CTAGAGTGAACGGTGCGTGTTTGCCACCCAAATAATGGACACCCCCTGGC
CACATTGATTGCATGTGATGCTTCCAGGGCTGTACATGACTTGGCTGAGC
TGGTGACCAGCTATGCCGGCAATGACCTGCACGGGGAGCTGCAGGCACGC
CTCAACCAGCTGGGCTTCAGGGGCGCAGAGCTGGACGATGACGGAGACGT
GCAGGAGGGCGCCGATAACCTCAAGATCCTGGATATCTGCGAGACGGTGC
GCCACGTGCCCGACGGCGACAGCGACGCTAGCAAGCGCCGGCTTTTGGCA
CAGCTGCAGCAGCTCTATGTGGAGACCGACCGCACAGACTACCAGGATCT
GATGTCGAGGCTTTTTGAGCAGTTTCCTCAGTTTCCTGACGATGCCGCAG
CGCGCCGCGAGAGCAGGGACGCTGTGTGGGGTCTGCTGCTGGTCCCTCCA
AAGCTTACTGCCACCCTCCCCCGGTTCAAGCCCCAGCCGGCGTTCATCCG
CATCGACCGTTTGTGAGTCGCCAACACGCTGCCGCATCTGTCTCATAGCT
GTTGTTCTCAGGTCCTTCGCCCTTCAAGTTGCTTGAAGTTCACTGACCAA
GTTGACAGGGGGTACGGCGCACGCGTGCATATGGGTGCTCTAGGGCTGCA
GGCATAGCCTCGCTGCGTAGTGCCTGTCGACATGATGAGCACGCTCAGCC
TACTAGTACTGTAGTAGCACACTCAGATGTCCTATATGCTTAGCTGCTGG
TAGCAGCACACTGCAGATATCAGCGCGCTTGACCTGTCACTCTGTCAACT
GTTGGTGTGACAATCATGATCTCATCACTCGCGTGATATGGTGATCACTG
AGCGGCTGTCTGAGTCAGCATCATATGCTGAAACCTGGCAATCACAGGCA
AATGTGATGATTGAGATTGTCATATGCTCAAACCGGTTGGCTGGTTCCAT
GCTTACATACTTTTAGTATGCATCCATCGCATCGCAGCGTGACATTGGTG
ACGGTGTCTCACCATGATGTGCTTTTGTTGTCGCTGTATCATGCGCTGCC
CCTCAAATGTGCAGCGGCATGGGCGAGCTGTTTCCAGATCTTGCTGCGCG
GATGGCCGGCCGGGGCCCCTGGTGGTATGCTGAGTTCATGCAGCCATGGG
CGAAGGCAGCCAACATCACCACCATGCGGCAGCGCACCAACCATTATGCG
CGCAGCGAGCGCGGTGTGATGCGGGCAATTGAGCGCGCCGGCCAACCGGG
GTACCGCATCCTGGCCCCGTGGCTGGTGGACAGGACGTTCATGACCGATG
GGCACCAGCTCAAGCTTCTGCTGGTCACCAGCCACGACTCGCACCAAGGC
CCCCATGGCCTGACCGAGCTGCCGCGGAGGGGTTATCAGGTGCCAAGCAC
TGTGCTTACTGATAGCTCGTAGGAATGTCCATTGTGTGATGCTCATCAAT
CAGGTACTTGTACCCGACTTGATGTCAAATGCTGCATTAGGCGGAGTTGC
TCGGAGTTCTACAACGCATGTTGCAGTTGCAGATGCAACTTGGTGAGGGG
CGCGCGTCACAACTGTTGCGTCCGTTGATTCAATCATAGATTGATGAATT
GATTCAACAGCTTTCTTGCCGATCATGAACATTGCCACTGTGGTATTGAT
AGTATGTCATACTTGCGCCATGAAGTCCCATTTGCAATCTGCCTCGATGG
CGTGCCAACACAGTCTGGATATGATGTGAAATTCAATGTCGACTGCATGC
AGACACTGTGTAGCCTCACCTTTGTGACTCCAGCATGCCATCAGTATGCC
ATCAGTGAGGGCGCCGATTGTCATGGCGCTGTACTACAGTATACACCTCA
TGGGCAGACTGAGAATAGTACACCCAATAGCTTGCTGATACCCCCCCCCC
CCCCTCCACTCATGTTCATTGCATTCTCCTCTATGTCACAGGTTGGGTGC
TGGAAGTGCACCTGTATGTACGTGCTGGCAACCGTTGCCATGTCCTTGGC
CACATAGAGGAACACCTCATGCAGGCGCCAAGGCGCCCCGGGGGCCTGCA
GGGCCTGCAGATTGCTGTTGTGGCTCAGGTCCTGGAATCGTTGAAGCGTC
GAGGCGGGCAACTGCGCAACAACAAGCGCACAAGGAGCACGTGTCACTCC
ACATGGACGAGTTGACCCCCTCGCACTGGCTTCCATGTGTTGACTTGGCG
CTGTAGCCAGAGTGCTAGCTGTGATGATCGCAGATTGATTGAGGTTTGCA
TTTTGGTCAATGCGAGTGTCAGTACCACTCGCACAGGTGACATCTCCAGG
CATGTTGCGCAAGTCATTCAGGTACTGTCAGGCTGTTAGCATACTGGTCG
ACAAGTTCATCATGTACTGGATGAAAGGCTGCCTTTATGAAACTGTGTGA
CAAGCATGCATGAATGGCTCACTCAACATGCACATCCTTCTCGGATAAAG
TCGTGAGCTATGGACGAACAACAAGTCATGCGACACTGCTGAAGTGTGGC
AGCGGTGCATGCAGAGGTGCAAGTGCGACAGCACATGTGTAGCGGTTGAT
GAGACGCACAACTCTGCATGCATTTGGTGAAGTTGTAAGTCCAACTTCAA
GTTGATGTTGATATTCAACTTGAAGTTGAAGTAGGGGGTTGCTCCGCATG
TTGTTTTAGGGTTAGCGTCATGCGCTGAGCAATGCTGCGCTGCTTGCAAC
TGCTAATAAAATTACTGGACACCTTGAAACAAGCTGAAAGCTTACCTCTC
ATGGATCTGGTCATTGTTTATATGGCAAACGCTAAAATGAGTAGTATTTA
GACACATCAAGGCCGCTAGGCCACATCTGGTGACCGGAGTGCTCGAGCCG
ACACCTTCGCCTTTTCGAGCCAGCGAACGGAGAGCTCTGGACTGCTGTAC
CGGCAAGTGCCGGGAGCGGACCATCTCCCTGTCAACTTAGAGCGGGCTGC
CTTCAGCGCCAGCCCTTTCTCCGTCTCTAGTTAGCGCTTACGTGTATACG
GGGCGCTCGCAGCTGATCTATCGGGCCGGGAAACCGAGCAGCAACTGATA
GAGCTGTTTTTCAGCAGGACTTTGCCGGCATATCGGAGTGCAACGACGTC
AACTGGCCACCAGTTGTCGCGTCACGGTTGCGTCCGAGACCTGTGCTGGA
TTAGTGTCTACCACGGTCTGGCGGGCTCTGTGCGGGAAGAAGCCGACTTC
AACTTGCGCGTGACCATTTGCAGGGGCGTGAGTGTCTACCACCGCGAGGG
CCTGCAGTGAGAATCTTGGGGTTATCAGGGGATTATTGCTGCTGGAGGAG
TGGCTGGAGCGATTGGCAGCTCGGAATTTGCTTGGCGTGGCGTGCGCTGA
GCTCGTCGTTTTCGGATTGATTTTATTTCCTGAGCGTAGGTGGCGCGCCC
TGACGATTGGGAGTATTTGCGGCTGATACTGGGTGAGTGGCTTGCGCTGC
TGCCCAGCAGTCGTTTTGGCACGCTGGCGCTTGCTCGCCGGCTGTCCATT
CAGTGCCCTCTCGCGATCGCTACTGCCTTGCTTTTTGAGGCTCGCGTATT
GCGTCGTTCATCGCGCAACTTGCGGCTTGGCGGCAGTCTGGCGGTGTATG
CAGTGTCAGTGACACTATCAACAATTTACTGGCACGCTACATCCACCGGA
GGGTCATGTTTTGAAGGACTTCGGGCGCAGTCCTCGGGGTTCGCTGCATA
CGCGTTTTGTCGGAGGGGGTCGCCTGTTTCTCGTGCACTATCCTGTTTTG
GGTGGGTGCTGGTGATTGACAGTTGATTGACATCCTCTTGGCTCGCTGTG
CAACCTTTCATCGCCTGCTTAGCGCTGGCCCAGGGGGGGGGGTGTGGCTG
CACAGCTCTCAGTTTCGTGCAGCACAAATAGGGTGTGATATCAATCAGAA
ATTTTTTCTGGCAGCTGTCGACATGAATTCGCGTCAGCTTGGGGCAAAAC
ACACTCTGCGCAACTTTCCGGAGGCTGCCTCAAATCTTTGGGACTTTTCA
TCAGGCCTGGAGGCAGCGGGTACTTCGGTGCCGCAGCAGTCTGGTGTATC
GGCGAGAGGTGCGTCAAGGGTGCCATCGGGCACCACAAACTCAGCCGCAA
CGACTGATATGGGAGTGCTTGCACACGATCAGCCTGTCTCACGCCGTCTT
GTTCGACAGCCGTGGTCGCGAGGCGCGGCACTGGCTGGCCAGCATCCTGC
AGTTCGTCAGCAGCTAGCAGACATGCGCGCTGGCACGCCGTTCATGCGGC
CTGGCGGGGTTCCTACTGACTTGCCAGACTTTCGTGCATACGGCACCAGC
TGCTTGATGCGTGGCATCATGGTGGCGACGTCAGAACCACGCAACGAGGC
GTCCGGCGATGTTTTTGAGCTGGGTGCCGCGGAAAGCACCGTGATATAAT
GGCCTCGAACTTGTCGTATGGACAGTTCGTGACTGTCATAACGATGGACG
AATAACATTGACGCGGGGTGGTGGCAGCACTGCTAAGGGACACCTACGGC
CAGACCGTCAGCTGGAGCCTGTTGAGGTGGATATGAGCTTTCATCATGGG
CTCCTTGCGCCATTCTCCCCACAGCTTGGCGAGCTCACGCTCACGTGCTC
GCGCAGCTCTGACGGCGAGAAACCGAAGCCGCGCATTGTACAAGTCATTG
GTTACGGAGAGTCGGCGTCTCAACCGCTTCTGCACGCCGACAACCACGTG
TCTGTGTGGAATCCTCTTGGTCACAATGGCCATGGTAGGGAGTATGGGGT
GAGTGCATGGCGCTTAGCACCACTTCGACTGCCTGAAAGGACCCGTGTCA
TTGCGCTTGTTCCCGCAATTGGGCCTGATGGCTGTGGCCCATTGATGGCC
GTAGTGGCCATGTTGGCAACGTGGTGTGATGCGCAGCTGCACTTACCAGA
GTCGCGCACAGGTGCTTTCAGAATTCAGGTTCGCCCCATCTTCAACGGGC
AGCCCTCGGCTCACGTGGTGTCGGTGAAGTGGACACACGTGCGTCTGATC
GACATGGCGGTCACCACCTACTGCTCCCTGCCACCAATAGAGACAAGCAG
GCCTGCCTACGCCGTCAACCCTCGCGACCTGCAATCATGGGCACAGCCGC
TCGTGTACTTCTGCACACATGACAGCATGCACTCGTACCCGCTGGTTACA
CGACCACTGCGTAGCTGCTCCTCCAAGCTTGCCCTTAGTAAGATTTTACT
ACAATAGGGAACGGCAGGCAGAGTGGCACAAAAGCTCATGTAGAAACATA
GCAATGATGTATTGCGCTGGTATGGGGGGGGAGTGGTCGAAGCCGCTGAC
AGTGTTACCACCTGGGGGAATCCCAGCATCTCCACTGGTGGCGCTGTCGC
TGCTGTGCCTCCTCCTCCTACCTCCTCTGCCTCCTCCTGCCGCCTGCCTC
GCTCAAGGTCAAGCCCACGAGCGGTTGGCTGGGGGAAGTGGAGGTGGGTA
CACTGTAA
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Coding sequence (CDS) from alignment at Contig_36:343774..349731+

>mRNA_8370 ID=mRNA_8370|Name=jgi.p|Trimin1|349099|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=864bp|location=Sequence derived from alignment at Contig_36:343774..349731+ (Tribonema minus UTEX_B_3156 )
ATGACTGTGCGCCCGTTCACCAGCTATGCCGGCAATGACCTGCACGGGGA
GCTGCAGGCACGCCTCAACCAGCTGGGCTTCAGGGGCGCAGAGCTGGACG
ATGACGGAGACGTGCAGGAGGGCGCCGATAACCTCAAGATCCTGGATATC
TGCGAGACGGTGCGCCACGTGCCCGACGGCGACAGCGACGCTAGCAAGCG
CCGGCTTTTGGCACAGCTGCAGCAGCTCTATGTGGAGACCGACCGCACAG
ACTACCAGGATCTGATGTCGAGGCTTTTTGAGCAGTTTCCTCAGTTTCCT
GACGATGCCGCAGCGCGCCGCGAGAGCAGGGACGCTGTGTGGGGTCTGCT
GCTGGTCCCTCCAAAGCTTACTGCCACCCTCCCCCGGTTCAAGCCCCAGC
CGGCGTTCATCCGCATCGACCGTTTCGGCATGGGCGAGCTGTTTCCAGAT
CTTGCTGCGCGGATGGCCGGCCGGGGCCCCTGGTGGTATGCTGAGTTCAT
GCAGCCATGGGCGAAGGCAGCCAACATCACCACCATGCGGCAGCGCACCA
ACCATTATGCGCGCAGCGAGCGCGGTGTGATGCGGGCAATTGAGCGCGCC
GGCCAACCGGGGTACCGCATCCTGGCCCCGTGGCTGGTGGACAGGACGTT
CATGACCGATGGGCACCAGCTCAAGCTTCTGCTGGTCACCAGCCACGACT
CGCACCAAGGCCCCCATGGCCTGACCGAGCTGCCGCGGAGGGGTTATCAG
CTTGGCGAGCTCACGCTCACGTGCTCGCGCAGCTCTGACGGCGAGAAACC
GAAGCCGCGCATTGTCAAGCCCACGAGCGGTTGGCTGGGGGAAGTGGAGG
TGGGTACACTGTAA
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