Trimin1|349061|estExt_Genemark1.C_Ctg_350045 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|349061
Unique Name	Trimin1\|349061\|estExt_Genemark1.C_Ctg_350045
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	78

Homology

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BLAST of jgi.p|Trimin1|349061 vs. uniprot
Match: A0A835YXN7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXN7_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.370e-30
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0

Query:    1 MPQVFKGGDTSXXXXXXXXXXXXXXXXXXXMTKEQRRERQLRRMQRPGYQPKKSHHIGMMEKLKEKVTGHATASDFI 77
            MPQVFKGGDTSXXXXXXXXXXXXXXXXXXXMTKEQRRERQLRRMQRPGYQPKKSHHIGMMEKLKEKVTGHATASDFI
Sbjct:    1 MPQVFKGGDTSXXXXXXXXXXXXXXXXXXXMTKEQRRERQLRRMQRPGYQPKKSHHIGMMEKLKEKVTGHATASDFI 77

[Close]

BLAST of jgi.p|Trimin1|349061 vs. uniprot
Match: A0A835YV74_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV74_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.840e-5
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 0

Query:   31 MTKEQRRERQLRRMQRPGYQPKKSHHIGMMEKLKEKVTG 69
            MTKEQR +RQ+ RMQRPGY+PKK HH  +M+K+  KV G
Sbjct:  102 MTKEQRMQRQMHRMQRPGYKPKK-HHASLMDKVAAKVPG 139

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349061 vs. uniprot

BLAST of jgi.p|Trimin1|349061 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YXN7_9STRA	2.370e-30	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YV74_9STRA	1.840e-5	64.10	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_35	contig	Contig_35:467742..469804 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349061	mRNA_7731	Tribonema minus UTEX_B_3156	mRNA	Contig_35 467742..470089 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|349061|estExt_Genemark1.C_Ctg_350045 ID=Trimin1|349061|estExt_Genemark1.C_Ctg_350045|Name=jgi.p|Trimin1|349061|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=78bp
MPQVFKGGDTSSSSSSDDEGGKRKAQRRATMTKEQRRERQLRRMQRPGYQ
PKKSHHIGMMEKLKEKVTGHATASDFI*