mRNA_7739 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|150129
Unique NamemRNA_7739
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|150129 vs. uniprot
Match: A0A835YW01_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW01_9STRA)

HSP 1 Score: 258 bits (660), Expect = 2.090e-87
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1
Query:    1 RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDTACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFAY 378
            RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDTACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFAY
Sbjct:    1 RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDTACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFAY 126          
BLAST of jgi.p|Trimin1|150129 vs. uniprot
Match: A0A835YUG7_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG7_9STRA)

HSP 1 Score: 209 bits (533), Expect = 5.060e-68
Identity = 104/125 (83.20%), Postives = 112/125 (89.60%), Query Frame = 1
Query:    1 RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDTACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFA 375
            RLMG DM+IIAEV ARNEWWQATPAR EVQQ LL A PA SW +H+G DD A ERSVRE DVRDDLALALDGSIEM++PAGFADVVTATEVI+VK+ RNWKH+LGQVLAYHAFMSDKSKRIHLFA
Sbjct:    3 RLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA 127          
BLAST of jgi.p|Trimin1|150129 vs. uniprot
Match: A0A835Z393_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z393_9STRA)

HSP 1 Score: 180 bits (457), Expect = 1.650e-56
Identity = 92/125 (73.60%), Postives = 101/125 (80.80%), Query Frame = 1
Query:    1 RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDTACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFA 375
            RLMGGDMRIIAEV AR++WWQ T ARREVQQ LLA PPA  W + +G  DT      RE DVRDDLALAL GSIE+++PAGFADV+TAT VIEVK+ RNWKHALGQVLAYHAF SDK  RIHLFA
Sbjct:    3 RLMGGDMRIIAEVVARHKWWQETAARREVQQALLAPPPAGRWDEFSGTSDT-----TRECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLFA 122          
BLAST of jgi.p|Trimin1|150129 vs. uniprot
Match: A0A835YNY8_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNY8_9STRA)

HSP 1 Score: 175 bits (443), Expect = 2.240e-54
Identity = 91/125 (72.80%), Postives = 100/125 (80.00%), Query Frame = 1
Query:    1 RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDTACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFA 375
            RLM GDM+IIAEVA RN WWQATPAR EVQ+TLLA+ P  +  D    DDT      RERDVRD+LALAL G+IE++  AGFADVVTATEVIE+K  R WKHALGQVLAYHAFMSDKSKRIHLFA
Sbjct:    3 RLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDT-----TRERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA 122          
BLAST of jgi.p|Trimin1|150129 vs. uniprot
Match: D7G319_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G319_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 8.410e-22
Identity = 52/126 (41.27%), Postives = 72/126 (57.14%), Query Frame = 1
Query:    1 RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDTACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFAY 378
            R+MGGD+ ++ E+   N  W++      +QQ L+           T         SV+E  VRD LA  + G  E+++PAG  DV++ TEVIEVK  + WKH LGQVLAYH F    +KR+HLFA+
Sbjct:    3 RVMGGDLALLKEIEQNNLTWRSVEGGPAIQQALIEPIEYQHVEKST---------SVKECWVRDALASLVGGEPEVETPAGNIDVLSGTEVIEVKYYKQWKHGLGQVLAYHCFHPSLAKRLHLFAH 119          
BLAST of jgi.p|Trimin1|150129 vs. uniprot
Match: D8LP52_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP52_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.480e-19
Identity = 50/125 (40.00%), Postives = 69/125 (55.20%), Query Frame = 1
Query:    1 RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDTACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFA 375
            R+MGGD++++  +   N  W +      +Q+ L+         DHT   +      VRE+ VRD LAL + G  E ++P GF DV++ TEVIEVK    WKH LGQVL+Y        KR+HLFA
Sbjct:    4 RVMGGDLKLLRNIERNNLAWMSVQGGEVIQRALIEPI------DHT---EKYVSGRVREKSVRDALALIVGGKTEQETPVGFIDVLSDTEVIEVKHYTLWKHGLGQVLSYQRHYPHLDKRLHLFA 119          
BLAST of jgi.p|Trimin1|150129 vs. uniprot
Match: A0A6H5L5N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N7_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 7.930e-18
Identity = 51/126 (40.48%), Postives = 73/126 (57.94%), Query Frame = 1
Query:    1 RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDTACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFAY 378
            R+MGGD+ +  ++      W        +QQ LL   P  +      ++D   ER VRE  VRD LA  + G+ E+++P+G+ DV++ TEVIEVK  RNWK  LGQVL Y +     S+R+HLFA+
Sbjct:  669 RVMGGDLSLCRQIEQNALGWNCVDGGEAIQQALLR--PVKN------IEDCVTER-VRECVVRDALAFVVGGTTEVETPSGYIDVLSETEVIEVKYYRNWKEGLGQVLPYQSHYPRLSRRLHLFAH 785          
BLAST of jgi.p|Trimin1|150129 vs. uniprot
Match: A0A6H5JJP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP2_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 8.670e-16
Identity = 49/126 (38.89%), Postives = 72/126 (57.14%), Query Frame = 1
Query:    1 RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDTACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFAY 378
            R+MGGD+ +  ++      W        +QQ LL  P  +        ++   ER VRE  VRD LA  + G+ E+++P+G+ DV++ TEVIEVK  R WK  LGQVLAY +     ++R+HLFA+
Sbjct:  235 RVMGGDLSLCRQIEQNALGWNCVEGGEAIQQALLR-PVKYK-------ENCVTER-VRECVVRDALASLVGGTTEVETPSGYIDVLSETEVIEVKYYRQWKDGLGQVLAYQSHYPRLARRLHLFAH 351          
BLAST of jgi.p|Trimin1|150129 vs. uniprot
Match: B5LW94_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LW94_9PHYC)

HSP 1 Score: 78.6 bits (192), Expect = 1.390e-14
Identity = 48/125 (38.40%), Postives = 70/125 (56.00%), Query Frame = 1
Query:    1 RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDTACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFA 375
            R++GGD+R+ A +      W + P   +V+Q L+A P  H         +   +RS  E  +RD LA +L G  E+++P G  DV+T+TEVIEVK  R + H  GQV+ Y  +     KR+HLFA
Sbjct:  241 RIIGGDLRLQATINKNYLEWTSAPELEKVRQDLIA-PLEHF--------ELYKKRSGHEAVIRDKLAESLGGKTEVRTPCGRIDVLTSTEVIEVKHYRMFLHGYGQVMGYGEYHPLLKKRLHLFA 356          
BLAST of jgi.p|Trimin1|150129 vs. uniprot
Match: UPI001683CC24 (hypothetical protein n=1 Tax=Anabaena sphaerica TaxID=212446 RepID=UPI001683CC24)

HSP 1 Score: 73.9 bits (180), Expect = 1.050e-13
Identity = 35/73 (47.95%), Postives = 52/73 (71.23%), Query Frame = 1
Query:  157 CERSVR-ERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLF 372
            C+R+ + E+ ++  LA  L+G IE+++P G  DV+T+TE+IEVK+ RNWK ALGQV+ Y  +     KRIHL+
Sbjct:  107 CKRAKKSEKSIQSTLAKELNGKIEIETPCGKIDVLTSTELIEVKAIRNWKEALGQVIVYGDYYPSHQKRIHLY 179          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150129 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YW01_9STRA2.090e-87100.00FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus Tax... [more]
A0A835YUG7_9STRA5.060e-6883.20FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus Tax... [more]
A0A835Z393_9STRA1.650e-5673.60FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus Tax... [more]
A0A835YNY8_9STRA2.240e-5472.80FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus Tax... [more]
D7G319_ECTSI8.410e-2241.27FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D8LP52_ECTSI2.480e-1940.00FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5L5N7_9PHAE7.930e-1840.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJP2_9PHAE8.670e-1638.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B5LW94_9PHYC1.390e-1438.40Uncharacterized protein n=1 Tax=Feldmannia species... [more]
UPI001683CC241.050e-1347.95hypothetical protein n=1 Tax=Anabaena sphaerica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_35contigContig_35:521376..521753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|150129|gw1.35.110.1
Max annot lvl1117|Cyanobacteria
EggNOG OGs29WTT@1|root,30IF6@2|Bacteria,1G9IK@1117|Cyanobacteria,1JM7S@1189|Stigonemataceae
Evalue8.84e-12
Seed ortholog221288.JH992899_gene5
Hectar predicted targeting categoryother localisation
TranscriptId150451
TrackFilteredModels1
ProteinId150129
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150129gene_7739Tribonema minus UTEX_B_3156 geneContig_35 521376..521753 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7739_1exon_7739_1Tribonema minus UTEX_B_3156 exonContig_35 521376..521753 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7739CDS_7739Tribonema minus UTEX_B_3156 CDSContig_35 521376..521753 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150129Trimin1|150129|gw1.35.110.1Tribonema minus UTEX_B_3156 polypeptideContig_35 521376..521753 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7739 ID=mRNA_7739|Name=jgi.p|Trimin1|150129|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=378bp|location=Sequence derived from alignment at Contig_35:521376..521753- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGTTTGATGGGTGGGGACATGAGGATCATCGCGGAGGTGGCGGCGCGCAA
TGAATGGTGGCAGGCGACGCCTGCGCGGCGTGAGGTCCAACAGACATTGC
TGGCGGCACCGCCTGCGCACAGCTGGGGCGACCACACCGGCATGGACGAC
ACCGCTTGTGAGCGCAGCGTGCGTGAGCGCGACGTGCGCGATGACCTGGC
GCTGGCGCTGGATGGCAGCATCGAGATGAAGTCGCCGGCGGGCTTCGCGG
ATGTCGTCACCGCCACCGAGGTCATCGAGGTGAAGAGCTGTCGAAACTGG
AAGCATGCGCTCGGCCAGGTGCTGGCCTACCACGCGTTCATGAGCGACAA
GAGCAAGCGCATCCACCTCTTTGCCTAC
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protein sequence of jgi.p|Trimin1|150129

>Trimin1|150129|gw1.35.110.1 ID=Trimin1|150129|gw1.35.110.1|Name=jgi.p|Trimin1|150129|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=126bp
RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDD
TACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNW
KHALGQVLAYHAFMSDKSKRIHLFAY
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mRNA from alignment at Contig_35:521376..521753-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7739 ID=mRNA_7739|Name=jgi.p|Trimin1|150129|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=378bp|location=Sequence derived from alignment at Contig_35:521376..521753- (Tribonema minus UTEX_B_3156 )
CGTTTGATGGGTGGGGACATGAGGATCATCGCGGAGGTGGCGGCGCGCAA TGAATGGTGGCAGGCGACGCCTGCGCGGCGTGAGGTCCAACAGACATTGC TGGCGGCACCGCCTGCGCACAGCTGGGGCGACCACACCGGCATGGACGAC ACCGCTTGTGAGCGCAGCGTGCGTGAGCGCGACGTGCGCGATGACCTGGC GCTGGCGCTGGATGGCAGCATCGAGATGAAGTCGCCGGCGGGCTTCGCGG ATGTCGTCACCGCCACCGAGGTCATCGAGGTGAAGAGCTGTCGAAACTGG AAGCATGCGCTCGGCCAGGTGCTGGCCTACCACGCGTTCATGAGCGACAA GAGCAAGCGCATCCACCTCTTTGCCTAC
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Coding sequence (CDS) from alignment at Contig_35:521376..521753-

>mRNA_7739 ID=mRNA_7739|Name=jgi.p|Trimin1|150129|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=378bp|location=Sequence derived from alignment at Contig_35:521376..521753- (Tribonema minus UTEX_B_3156 )
CGTTTGATGGGTGGGGACATGAGGATCATCGCGGAGGTGGCGGCGCGCAA
TGAATGGTGGCAGGCGACGCCTGCGCGGCGTGAGGTCCAACAGACATTGC
TGGCGGCACCGCCTGCGCACAGCTGGGGCGACCACACCGGCATGGACGAC
ACCGCTTGTGAGCGCAGCGTGCGTGAGCGCGACGTGCGCGATGACCTGGC
GCTGGCGCTGGATGGCAGCATCGAGATGAAGTCGCCGGCGGGCTTCGCGG
ATGTCGTCACCGCCACCGAGGTCATCGAGGTGAAGAGCTGTCGAAACTGG
AAGCATGCGCTCGGCCAGGTGCTGGCCTACCACGCGTTCATGAGCGACAA
GAGCAAGCGCATCCACCTCTTTGCCTAC
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