mRNA_7739 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|150129 vs. uniprot
Match: A0A835YW01_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW01_9STRA) HSP 1 Score: 258 bits (660), Expect = 2.090e-87 Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1
Query: 1 RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDTACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFAY 378
RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDTACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFAY
Sbjct: 1 RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDTACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFAY 126
BLAST of jgi.p|Trimin1|150129 vs. uniprot
Match: A0A835YUG7_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG7_9STRA) HSP 1 Score: 209 bits (533), Expect = 5.060e-68 Identity = 104/125 (83.20%), Postives = 112/125 (89.60%), Query Frame = 1
Query: 1 RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDTACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFA 375
RLMG DM+IIAEV ARNEWWQATPAR EVQQ LL A PA SW +H+G DD A ERSVRE DVRDDLALALDGSIEM++PAGFADVVTATEVI+VK+ RNWKH+LGQVLAYHAFMSDKSKRIHLFA
Sbjct: 3 RLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA 127
BLAST of jgi.p|Trimin1|150129 vs. uniprot
Match: A0A835Z393_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z393_9STRA) HSP 1 Score: 180 bits (457), Expect = 1.650e-56 Identity = 92/125 (73.60%), Postives = 101/125 (80.80%), Query Frame = 1
Query: 1 RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDTACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFA 375
RLMGGDMRIIAEV AR++WWQ T ARREVQQ LLA PPA W + +G DT RE DVRDDLALAL GSIE+++PAGFADV+TAT VIEVK+ RNWKHALGQVLAYHAF SDK RIHLFA
Sbjct: 3 RLMGGDMRIIAEVVARHKWWQETAARREVQQALLAPPPAGRWDEFSGTSDT-----TRECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLFA 122
BLAST of jgi.p|Trimin1|150129 vs. uniprot
Match: A0A835YNY8_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNY8_9STRA) HSP 1 Score: 175 bits (443), Expect = 2.240e-54 Identity = 91/125 (72.80%), Postives = 100/125 (80.00%), Query Frame = 1
Query: 1 RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDTACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFA 375
RLM GDM+IIAEVA RN WWQATPAR EVQ+TLLA+ P + D DDT RERDVRD+LALAL G+IE++ AGFADVVTATEVIE+K R WKHALGQVLAYHAFMSDKSKRIHLFA
Sbjct: 3 RLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDT-----TRERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA 122
BLAST of jgi.p|Trimin1|150129 vs. uniprot
Match: D7G319_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G319_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 8.410e-22 Identity = 52/126 (41.27%), Postives = 72/126 (57.14%), Query Frame = 1
Query: 1 RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDTACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFAY 378
R+MGGD+ ++ E+ N W++ +QQ L+ T SV+E VRD LA + G E+++PAG DV++ TEVIEVK + WKH LGQVLAYH F +KR+HLFA+
Sbjct: 3 RVMGGDLALLKEIEQNNLTWRSVEGGPAIQQALIEPIEYQHVEKST---------SVKECWVRDALASLVGGEPEVETPAGNIDVLSGTEVIEVKYYKQWKHGLGQVLAYHCFHPSLAKRLHLFAH 119
BLAST of jgi.p|Trimin1|150129 vs. uniprot
Match: D8LP52_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP52_ECTSI) HSP 1 Score: 90.1 bits (222), Expect = 2.480e-19 Identity = 50/125 (40.00%), Postives = 69/125 (55.20%), Query Frame = 1
Query: 1 RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDTACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFA 375
R+MGGD++++ + N W + +Q+ L+ DHT + VRE+ VRD LAL + G E ++P GF DV++ TEVIEVK WKH LGQVL+Y KR+HLFA
Sbjct: 4 RVMGGDLKLLRNIERNNLAWMSVQGGEVIQRALIEPI------DHT---EKYVSGRVREKSVRDALALIVGGKTEQETPVGFIDVLSDTEVIEVKHYTLWKHGLGQVLSYQRHYPHLDKRLHLFA 119
BLAST of jgi.p|Trimin1|150129 vs. uniprot
Match: A0A6H5L5N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N7_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 7.930e-18 Identity = 51/126 (40.48%), Postives = 73/126 (57.94%), Query Frame = 1
Query: 1 RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDTACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFAY 378
R+MGGD+ + ++ W +QQ LL P + ++D ER VRE VRD LA + G+ E+++P+G+ DV++ TEVIEVK RNWK LGQVL Y + S+R+HLFA+
Sbjct: 669 RVMGGDLSLCRQIEQNALGWNCVDGGEAIQQALLR--PVKN------IEDCVTER-VRECVVRDALAFVVGGTTEVETPSGYIDVLSETEVIEVKYYRNWKEGLGQVLPYQSHYPRLSRRLHLFAH 785
BLAST of jgi.p|Trimin1|150129 vs. uniprot
Match: A0A6H5JJP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP2_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 8.670e-16 Identity = 49/126 (38.89%), Postives = 72/126 (57.14%), Query Frame = 1
Query: 1 RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDTACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFAY 378
R+MGGD+ + ++ W +QQ LL P + ++ ER VRE VRD LA + G+ E+++P+G+ DV++ TEVIEVK R WK LGQVLAY + ++R+HLFA+
Sbjct: 235 RVMGGDLSLCRQIEQNALGWNCVEGGEAIQQALLR-PVKYK-------ENCVTER-VRECVVRDALASLVGGTTEVETPSGYIDVLSETEVIEVKYYRQWKDGLGQVLAYQSHYPRLARRLHLFAH 351
BLAST of jgi.p|Trimin1|150129 vs. uniprot
Match: B5LW94_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LW94_9PHYC) HSP 1 Score: 78.6 bits (192), Expect = 1.390e-14 Identity = 48/125 (38.40%), Postives = 70/125 (56.00%), Query Frame = 1
Query: 1 RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDTACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFA 375
R++GGD+R+ A + W + P +V+Q L+A P H + +RS E +RD LA +L G E+++P G DV+T+TEVIEVK R + H GQV+ Y + KR+HLFA
Sbjct: 241 RIIGGDLRLQATINKNYLEWTSAPELEKVRQDLIA-PLEHF--------ELYKKRSGHEAVIRDKLAESLGGKTEVRTPCGRIDVLTSTEVIEVKHYRMFLHGYGQVMGYGEYHPLLKKRLHLFA 356
BLAST of jgi.p|Trimin1|150129 vs. uniprot
Match: UPI001683CC24 (hypothetical protein n=1 Tax=Anabaena sphaerica TaxID=212446 RepID=UPI001683CC24) HSP 1 Score: 73.9 bits (180), Expect = 1.050e-13 Identity = 35/73 (47.95%), Postives = 52/73 (71.23%), Query Frame = 1
Query: 157 CERSVR-ERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLF 372
C+R+ + E+ ++ LA L+G IE+++P G DV+T+TE+IEVK+ RNWK ALGQV+ Y + KRIHL+
Sbjct: 107 CKRAKKSEKSIQSTLAKELNGKIEIETPCGKIDVLTSTELIEVKAIRNWKEALGQVIVYGDYYPSHQKRIHLY 179 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150129 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_7739 ID=mRNA_7739|Name=jgi.p|Trimin1|150129|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=378bp|location=Sequence derived from alignment at Contig_35:521376..521753- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CGTTTGATGGGTGGGGACATGAGGATCATCGCGGAGGTGGCGGCGCGCAAback to top protein sequence of jgi.p|Trimin1|150129 >Trimin1|150129|gw1.35.110.1 ID=Trimin1|150129|gw1.35.110.1|Name=jgi.p|Trimin1|150129|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=126bp RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDback to top mRNA from alignment at Contig_35:521376..521753- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_7739 ID=mRNA_7739|Name=jgi.p|Trimin1|150129|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=378bp|location=Sequence derived from alignment at Contig_35:521376..521753- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_35:521376..521753- >mRNA_7739 ID=mRNA_7739|Name=jgi.p|Trimin1|150129|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=378bp|location=Sequence derived from alignment at Contig_35:521376..521753- (Tribonema minus UTEX_B_3156 )back to top |