Trimin1|349011|estExt_Genemark1.C_Ctg_340040 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|349011
Unique Name	Trimin1\|349011\|estExt_Genemark1.C_Ctg_340040
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	118

Homology

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BLAST of jgi.p|Trimin1|349011 vs. uniprot
Match: A0A835YVD0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVD0_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.270e-41
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0

Query:    1 MLSFPLVAQMLSKCCYACSDCCLACQITRTICGGSCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCKKRSPFRCPHCRLSARFAARWDHSRRCRTACRLTRRA 118
            MLSFPLVAQMLSKCCYACSDCCLACQITRTICGGSCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCKKRSPFRCPHCRLSARFAARWDHSRRCRTACRLTRRA
Sbjct:    1 MLSFPLVAQMLSKCCYACSDCCLACQITRTICGGSCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCKKRSPFRCPHCRLSARFAARWDHSRRCRTACRLTRRA 118

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349011 vs. uniprot

BLAST of jgi.p|Trimin1|349011 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YVD0_9STRA	1.270e-41	100.00	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 40..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..64

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_34	contig	Contig_34:355882..357158 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349011	mRNA_8274	Tribonema minus UTEX_B_3156	mRNA	Contig_34 355743..357160 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|349011|estExt_Genemark1.C_Ctg_340040 ID=Trimin1|349011|estExt_Genemark1.C_Ctg_340040|Name=jgi.p|Trimin1|349011|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=118bp
MLSFPLVAQMLSKCCYACSDCCLACQITRTICGGSCSSSASRQQQQQQQQ
QQQQQQQQQQQQQQQQQPPPPPQQQQQQRRCKKRSPFRCPHCRLSARFAA
RWDHSRRCRTACRLTRRA