Trimin1|352076|estExt_Genemark1.C_Ctg_1070066 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352076
Unique NameTrimin1|352076|estExt_Genemark1.C_Ctg_1070066
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length377
Homology
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BLAST of jgi.p|Trimin1|352076 vs. uniprot
Match: A0A835ZFW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFW7_9STRA)

HSP 1 Score: 661 bits (1706), Expect = 1.570e-238
Identity = 376/376 (100.00%), Postives = 376/376 (100.00%), Query Frame = 0 
Query:    1 MSGTTDDIRVAAQMANNGAGGAPGAPTIATSFLTLPQVTPSRRRGSLPTEGWGEPFEIPLRDEDSGHCQITLEAIRMVKGENGTVTPQHFAKTNISLTPDLRQMKADMFGKVNNKGAPKKLVTLSLTLELFKGQAAAKNRSPRAGRGKLFGALEGALELDEDGHPVGSGGAPTSPPTPALRPESPVFSGGEVPLSSRGAVAAAXXXXXXXXXXXXXXXXXXXXXXXXKLLLTTLCLALGGLCTILSYGGGXXXXXXXXGPEPIKLSPGAVMRPGDRVASASHFLELRGDGNLVVGVNAVAAGAGDAQSGAAAAPLVWESRTACGKCEARVTKSGEIVLLRHRFFAVGRYRLGQHPLPDVLRFVRDPQPKSMTIASS 376
            MSGTTDDIRVAAQMANNGAGGAPGAPTIATSFLTLPQVTPSRRRGSLPTEGWGEPFEIPLRDEDSGHCQITLEAIRMVKGENGTVTPQHFAKTNISLTPDLRQMKADMFGKVNNKGAPKKLVTLSLTLELFKGQAAAKNRSPRAGRGKLFGALEGALELDEDGHPVGSGGAPTSPPTPALRPESPVFSGGEVPLSSRGAVAAAXXXXXXXXXXXXXXXXXXXXXXXXKLLLTTLCLALGGLCTILSYGGGXXXXXXXXGPEPIKLSPGAVMRPGDRVASASHFLELRGDGNLVVGVNAVAAGAGDAQSGAAAAPLVWESRTACGKCEARVTKSGEIVLLRHRFFAVGRYRLGQHPLPDVLRFVRDPQPKSMTIASS
Sbjct:    1 MSGTTDDIRVAAQMANNGAGGAPGAPTIATSFLTLPQVTPSRRRGSLPTEGWGEPFEIPLRDEDSGHCQITLEAIRMVKGENGTVTPQHFAKTNISLTPDLRQMKADMFGKVNNKGAPKKLVTLSLTLELFKGQAAAKNRSPRAGRGKLFGALEGALELDEDGHPVGSGGAPTSPPTPALRPESPVFSGGEVPLSSRGAVAAAXXXXXXXXXXXXXXXXXXXXXXXXKLLLTTLCLALGGLCTILSYGGGXXXXXXXXGPEPIKLSPGAVMRPGDRVASASHFLELRGDGNLVVGVNAVAAGAGDAQSGAAAAPLVWESRTACGKCEARVTKSGEIVLLRHRFFAVGRYRLGQHPLPDVLRFVRDPQPKSMTIASS 376
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352076 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZFW7_9STRA1.570e-238100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036426Bulb-type lectin domain superfamilyGENE3D2.90.10.10coord: 264..340
e-value: 3.7E-5
score: 25.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..180

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_107contigContig_107:474196..477902 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352076mRNA_11620Tribonema minus UTEX_B_3156 mRNAContig_107 474196..477902 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352076|estExt_Genemark1.C_Ctg_1070066 ID=Trimin1|352076|estExt_Genemark1.C_Ctg_1070066|Name=jgi.p|Trimin1|352076|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=377bp
MSGTTDDIRVAAQMANNGAGGAPGAPTIATSFLTLPQVTPSRRRGSLPTE
GWGEPFEIPLRDEDSGHCQITLEAIRMVKGENGTVTPQHFAKTNISLTPD
LRQMKADMFGKVNNKGAPKKLVTLSLTLELFKGQAAAKNRSPRAGRGKLF
GALEGALELDEDGHPVGSGGAPTSPPTPALRPESPVFSGGEVPLSSRGAV
AAAAAAAAAATATAHRAAPARRAVPAKKLLLTTLCLALGGLCTILSYGGG
KAAAPPPPGPEPIKLSPGAVMRPGDRVASASHFLELRGDGNLVVGVNAVA
AGAGDAQSGAAAAPLVWESRTACGKCEARVTKSGEIVLLRHRFFAVGRYR
LGQHPLPDVLRFVRDPQPKSMTIASS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036426Bulb-type_lectin_dom_sf