Trimin1|348769|estExt_Genemark1.C_Ctg_310023 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|348769
Unique Name	Trimin1\|348769\|estExt_Genemark1.C_Ctg_310023
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	967

Homology

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BLAST of jgi.p|Trimin1|348769 vs. uniprot
Match: A0A836CE95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE95_9STRA)

HSP 1 Score: 1495 bits (3870), Expect = 0.000e+0
Identity = 966/966 (100.00%), Postives = 966/966 (100.00%), Query Frame = 0

Query:    1 MSTAAGVAVEVPLGFTGGAPVFDRTAEQTLLIQKVADLRGLVANVESFLAAAVLWKEALASFGAVCISSAQTDMKHLPATSAPVVEALRGVGTLLQEVKASQSKFIQQIVNVLEAASVRRNLCGTQLEINRKQAESKLLNHEKTLVDFLQASKSKAPEAAKHLINGRAEAMRAIFSVLKEEDMAHQQHAQMLSELVLALGNHLTDHMEVCAAAAHARVPVWESAQKAKAEVDAWYLAGEPWKRHGSXXXXXXXXXXXXXXXXXXRLNDALSHNCAEVMRLDLERLIVNRISPKFSHIVMPGTPACPENPTVAACFSQVRARRGXXXXXXXXXXXAGAAVXXXXXXXXXXXXXXXXXXXXXXAWRDMVPEFGTLNTASDCIRAGYMYRVRGTNTKSRFGRKWVRRWFELTRSGLYYWSGVGEEGIAPGTRILLSPVGLGALALHTNVRDAEKRRYRIDLTTYDRKTIALQTEGPYEFAMWCEAFQRSQIPLSPNETDSLSPALPHRHSAQCXXXXXXXXXXXXPPDCVPPPMENAPSPPKPQKVSRASFFRKSAPAAQMPLDMVTLPATAPTVTTTPQTDGGVQSPQGAAPTRAPALSAPAVAPLVNDVSPYKASXXXXXXXXXXXXXXXARFKSNSDAAAAALAPGANPANDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESLFDTXXXXXXXXXXXXXXXXXASAESXXXXXXXXXXXNRACADCAAVPTTHVSVGLGVLLCRACGMAHTASGVSQTKPLSSPDLDDGDVFLALAVGNAKSNALWEGDAEEVEPQKIKEDAGEWQRRSFVDDKYNQSLFVMMDENMRDEAVTVERLMKAAAANDVMAALGCLARISRAEGANAVGPDGDTPLHRAAAAGALEVCALLVRNGAAVGTHNADGDTAQGVALARGHGAVADFLLEAAPAAGAPLWVWFGDD 966
            MSTAAGVAVEVPLGFTGGAPVFDRTAEQTLLIQKVADLRGLVANVESFLAAAVLWKEALASFGAVCISSAQTDMKHLPATSAPVVEALRGVGTLLQEVKASQSKFIQQIVNVLEAASVRRNLCGTQLEINRKQAESKLLNHEKTLVDFLQASKSKAPEAAKHLINGRAEAMRAIFSVLKEEDMAHQQHAQMLSELVLALGNHLTDHMEVCAAAAHARVPVWESAQKAKAEVDAWYLAGEPWKRHGSXXXXXXXXXXXXXXXXXXRLNDALSHNCAEVMRLDLERLIVNRISPKFSHIVMPGTPACPENPTVAACFSQVRARRGXXXXXXXXXXXAGAAVXXXXXXXXXXXXXXXXXXXXXXAWRDMVPEFGTLNTASDCIRAGYMYRVRGTNTKSRFGRKWVRRWFELTRSGLYYWSGVGEEGIAPGTRILLSPVGLGALALHTNVRDAEKRRYRIDLTTYDRKTIALQTEGPYEFAMWCEAFQRSQIPLSPNETDSLSPALPHRHSAQCXXXXXXXXXXXXPPDCVPPPMENAPSPPKPQKVSRASFFRKSAPAAQMPLDMVTLPATAPTVTTTPQTDGGVQSPQGAAPTRAPALSAPAVAPLVNDVSPYKASXXXXXXXXXXXXXXXARFKSNSDAAAAALAPGANPANDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESLFDTXXXXXXXXXXXXXXXXXASAESXXXXXXXXXXXNRACADCAAVPTTHVSVGLGVLLCRACGMAHTASGVSQTKPLSSPDLDDGDVFLALAVGNAKSNALWEGDAEEVEPQKIKEDAGEWQRRSFVDDKYNQSLFVMMDENMRDEAVTVERLMKAAAANDVMAALGCLARISRAEGANAVGPDGDTPLHRAAAAGALEVCALLVRNGAAVGTHNADGDTAQGVALARGHGAVADFLLEAAPAAGAPLWVWFGDD
Sbjct:    1 MSTAAGVAVEVPLGFTGGAPVFDRTAEQTLLIQKVADLRGLVANVESFLAAAVLWKEALASFGAVCISSAQTDMKHLPATSAPVVEALRGVGTLLQEVKASQSKFIQQIVNVLEAASVRRNLCGTQLEINRKQAESKLLNHEKTLVDFLQASKSKAPEAAKHLINGRAEAMRAIFSVLKEEDMAHQQHAQMLSELVLALGNHLTDHMEVCAAAAHARVPVWESAQKAKAEVDAWYLAGEPWKRHGSXXXXXXXXXXXXXXXXXXRLNDALSHNCAEVMRLDLERLIVNRISPKFSHIVMPGTPACPENPTVAACFSQVRARRGXXXXXXXXXXXAGAAVXXXXXXXXXXXXXXXXXXXXXXAWRDMVPEFGTLNTASDCIRAGYMYRVRGTNTKSRFGRKWVRRWFELTRSGLYYWSGVGEEGIAPGTRILLSPVGLGALALHTNVRDAEKRRYRIDLTTYDRKTIALQTEGPYEFAMWCEAFQRSQIPLSPNETDSLSPALPHRHSAQCXXXXXXXXXXXXPPDCVPPPMENAPSPPKPQKVSRASFFRKSAPAAQMPLDMVTLPATAPTVTTTPQTDGGVQSPQGAAPTRAPALSAPAVAPLVNDVSPYKASXXXXXXXXXXXXXXXARFKSNSDAAAAALAPGANPANDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESLFDTXXXXXXXXXXXXXXXXXASAESXXXXXXXXXXXNRACADCAAVPTTHVSVGLGVLLCRACGMAHTASGVSQTKPLSSPDLDDGDVFLALAVGNAKSNALWEGDAEEVEPQKIKEDAGEWQRRSFVDDKYNQSLFVMMDENMRDEAVTVERLMKAAAANDVMAALGCLARISRAEGANAVGPDGDTPLHRAAAAGALEVCALLVRNGAAVGTHNADGDTAQGVALARGHGAVADFLLEAAPAAGAPLWVWFGDD 966

[Close]

BLAST of jgi.p|Trimin1|348769 vs. uniprot
Match: A0A835Z7N8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7N8_9STRA)

HSP 1 Score: 404 bits (1037), Expect = 4.960e-122
Identity = 402/983 (40.90%), Postives = 485/983 (49.34%), Query Frame = 0

Query:   68 SSAQTDMKHLPATSAPVVEALRGVGTLLQEVKASQSKFIQQIVNVLEAASVRRNLCGTQLEINRKQAESKLLNHEKTLVDFLQASKS-KAPEAAKHLINGRAEAMRAIFSVLKEEDMAHQQHAQMLSELVLALGNHLTDHMEVCAAAAHARVPVWESAQKAKAEV------------------DAWYLAGEPWKRHGSXXXXXXXXXXXXXXXXXXRLNDALSHNCAEVMRLDLERLIVNRISPKFSHIVMPGTPACPENPTVAACFSQVRARRGXXXXXXXXXXXAGAAVXXXXXXXXXXXXXXXXXXXXXXAWRDMVPEFGTLNTA-----------------------------SDCIRAGYMYRVRGTNTKSRFGRKWVRRWFELTRSGLYYWSGVGEEGIAPGTRILLSPVGLGALALHTNVRDAEKRRYRIDLTTYDRKTIALQTEGPYEFAMWCEAFQRSQIPLSPNETDSLSPALPHRHSAQCXXXXXXXXXXXXPPDCVPPPMENAPSPPKPQKVSRASFFRKSAPAA-----QMPLDMVTLPATAPTVTTTPQTDGGVQSPQGAAPTRAPALSAPAVAPLVNDVSPYKASXXXXXXXXXXXXXXXARFKSNSDAAAAALAPGANPANDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE------SLFDTXXXXXXXXXXXXXXXXXASAESXXXXXXXXXXXNRACADCAAVPTTHVSVGLGVLLCRACGMAHTASGVSQ---------------------------------------TKPLSSPDLDDGDVFLALAVGNAKSNALWEGDAEEVEPQKIKEDAGEWQRRSFVDDKYNQSLFVMMDENMRDEAVTVERLMKAAAANDVMAALGCLARISRAEGANAV-GPDGDTPLHRAAAAGALEVCALLVRNGAAVGTHNADGDTAQGVALARGHGAVADFLLEA 951
            ++A  D++HLP  SAP+ +AL+ VGTLL++VK SQ++ +  +   + A   +R  C   LE  R+ A+++   HE+ L DFL  S S K  +AA HL   +A                      ML+E VLALGN LT+H+  CAA A AR  +++ AQ +K                     DAW   G+PWK HG+                   L  ALS  CA  MR  LE LI  R+SP+F+HI MPGTPA PE+  VA  F+       XXXXXXXXXXX                XXXXXX      W D VPE G                                  +DCIRAGY++R    + K+RF RKWVRRWFELTRSGL+ W   G+EG   GTR LLS VG GAL    NV D EKRRYRID+TT+DRKTIALQ EGPYEFA+WCEAF RSQ+P S   +D   P LP ++ +                     P   APSPP  +  S  S   ++ PAA     +    M  L + AP            QS Q         L  PA  P +         XXXXXXXXXXXXXXX                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             E      S F +                 AS                 CADC A   +HVSVGLGVL+C AC  AHTA+G SQ                                       TK LSS  L+ GDVFLALA+GN +SN LWEGD  EVE  K+  +A + QR+ +V DKY +SLFV +DE   DE  T +RL+ AA  NDV  AL  LAR+ + +GA A    DG T LHRAAAAGALEV  LLV NGA+V   +ADG   + +AL     A+AD+L +A
Sbjct:   22 ATAHADLQHLPQASAPLSKALQSVGTLLRDVKTSQAQLVDHVGGAVRAVGAKRKACSALLESTRRAADARSAAHERALADFLSCSSSHKVTDAAAHLTAAQA---------------------SMLAECVLALGNSLTEHLRNCAAVASARKQIFDDAQSSKXXXXXXXXXXXXXXXXXXXXXDAWLSEGQPWKGHGA------------------HLKHALSARCAAGMRASLESLITVRVSPQFAHIAMPGTPAHPEDTAVATAFAXXXXXXXXXXXXXXXXXXX---------------XXXXXXADCLRVWSDTVPELGARERPRGLAXXXXXXXXXXXXXXXXXXXXXXXXXADCIRAGYLHR----SHKTRFARKWVRRWFELTRSGLFCWQAPGDEGYVAGTRTLLSHVGAGALGWQANVSDTEKRRYRIDITTFDRKTIALQAEGPYEFALWCEAFHRSQLPTSSLLSDYSVPPLPPKNCSPNQQSNQPELTT---------PSTKAPSPPSVRPSSAPSPSYRAPPAAARGPAEGSASMFQLSSLAPPS----------QSQQ--------TLLPPATTPHMPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAAGGGSRVLPFEAPSPYKSRFKSGNSPPAPLQRLHKSRLVASVAFLRESYDM-------CADCGAAEPSHVSVGLGVLVCGACAAAHTATGASQDLSEEQXXXXXXXXXXXXFLKDFDKGXXXXXXXXXXXXQTKALSSATLEMGDVFLALAIGNDRSNDLWEGDTTEVEYSKLSPEASDEQRQRYVTDKYTKSLFVAVDEAFPDERTTEQRLLSAADKNDVATALAALARLPKRKGAMAARDADGSTALHRAAAAGALEVACLLVNNGASVAAEDADGCVPRTLALRNSQQAMADYLQDA 912

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348769 vs. uniprot

BLAST of jgi.p|Trimin1|348769 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A836CE95_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835Z7N8_9STRA	4.960e-122	40.90	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001849	Pleckstrin homology domain	SMART	SM00233	PH_update	coord: 379..490 e-value: 2.0E-8 score: 44.0
IPR001849	Pleckstrin homology domain	PFAM	PF00169	PH	coord: 380..486 e-value: 3.6E-8 score: 33.8
IPR001849	Pleckstrin homology domain	PROSITE	PS50003	PH_DOMAIN	coord: 378..488 score: 8.8296
IPR001164	Arf GTPase activating protein	SMART	SM00105	arf_gap_3	coord: 734..855 e-value: 1.7E-4 score: 10.4
IPR001164	Arf GTPase activating protein	PFAM	PF01412	ArfGap	coord: 744..848 e-value: 2.8E-14 score: 53.2
IPR001164	Arf GTPase activating protein	PROSITE	PS50115	ARFGAP	coord: 734..856 score: 13.0105
IPR002110	Ankyrin repeat	SMART	SM00248	ANK_2a	coord: 895..927 e-value: 0.013 score: 24.7 coord: 928..957 e-value: 1200.0 score: 4.4
IPR002110	Ankyrin repeat	PFAM	PF13637	Ank_4	coord: 897..949 e-value: 3.4E-5 score: 24.3
IPR002110	Ankyrin repeat	PROSITE	PS50088	ANK_REPEAT	coord: 895..927 score: 12.39561
IPR011993	PH-like domain superfamily	GENE3D	2.30.29.30		coord: 371..489 e-value: 7.9E-10 score: 40.3
IPR036770	Ankyrin repeat-containing domain superfamily	GENE3D	1.25.40.20		coord: 852..958 e-value: 9.3E-13 score: 50.1
IPR036770	Ankyrin repeat-containing domain superfamily	SUPERFAMILY	48403	Ankyrin repeat	coord: 887..951
IPR038508	ArfGAP domain superfamily	GENE3D	1.10.220.150	Arf GTPase activating protein	coord: 719..851 e-value: 4.4E-17 score: 64.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 490..551
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 567..594
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 567..585
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 643..666
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 517..537
None	No IPR available	PANTHER	PTHR23180:SF160	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN EFFECTOR PROTEIN 1	coord: 671..950
None	No IPR available	PROSITE	PS50297	ANK_REP_REGION	coord: 895..922 score: 11.187517
None	No IPR available	CDD	cd00821	PH	coord: 381..483 e-value: 1.10765E-6 score: 45.6114
None	No IPR available	SUPERFAMILY	50729	PH domain-like	coord: 372..502
IPR045258	ArfGAP ACAP1/2/3-like	PANTHER	PTHR23180	CENTAURIN/ARF	coord: 671..950
IPR037278	ARFGAP/RecO-like zinc finger	SUPERFAMILY	57863	ArfGap/RecO-like zinc finger	coord: 744..848

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_31	contig	Contig_31:189445..202995 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348769	mRNA_7366	Tribonema minus UTEX_B_3156	mRNA	Contig_31 188817..202995 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|348769|estExt_Genemark1.C_Ctg_310023 ID=Trimin1|348769|estExt_Genemark1.C_Ctg_310023|Name=jgi.p|Trimin1|348769|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=967bp
MSTAAGVAVEVPLGFTGGAPVFDRTAEQTLLIQKVADLRGLVANVESFLA
AAVLWKEALASFGAVCISSAQTDMKHLPATSAPVVEALRGVGTLLQEVKA
SQSKFIQQIVNVLEAASVRRNLCGTQLEINRKQAESKLLNHEKTLVDFLQ
ASKSKAPEAAKHLINGRAEAMRAIFSVLKEEDMAHQQHAQMLSELVLALG
NHLTDHMEVCAAAAHARVPVWESAQKAKAEVDAWYLAGEPWKRHGSAEAD
AWYLAGEPWKRHGSRLNDALSHNCAEVMRLDLERLIVNRISPKFSHIVMP
GTPACPENPTVAACFSQVRARRGGAAAAAAAAAAAGAAVRARRGAAAAAA
AAAAARAECVRAWRDMVPEFGTLNTASDCIRAGYMYRVRGTNTKSRFGRK
WVRRWFELTRSGLYYWSGVGEEGIAPGTRILLSPVGLGALALHTNVRDAE
KRRYRIDLTTYDRKTIALQTEGPYEFAMWCEAFQRSQIPLSPNETDSLSP
ALPHRHSAQCPNETDYSSPALPPPDCVPPPMENAPSPPKPQKVSRASFFR
KSAPAAQMPLDMVTLPATAPTVTTTPQTDGGVQSPQGAAPTRAPALSAPA
VAPLVNDVSPYKASAPAVAPLVNNVSPYKARFKSNSDAAAAALAPGANPA
NDDGGDKSPGAASAASSKSSGTVARAAVEDYDDATVDSLASSAAGSATGG
GGGGGGGESLFDTVSRLQKEDYDDATVDSLASAESLFDTVSCLQKENRAC
ADCAAVPTTHVSVGLGVLLCRACGMAHTASGVSQTKPLSSPDLDDGDVFL
ALAVGNAKSNALWEGDAEEVEPQKIKEDAGEWQRRSFVDDKYNQSLFVMM
DENMRDEAVTVERLMKAAAANDVMAALGCLARISRAEGANAVGPDGDTPL
HRAAAAGALEVCALLVRNGAAVGTHNADGDTAQGVALARGHGAVADFLLE
AAPAAGAPLWVWFGDD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001849	PH_domain
IPR001164	ArfGAP_dom
IPR002110	Ankyrin_rpt
IPR011993	PH-like_dom_sf
IPR036770	Ankyrin_rpt-contain_sf
IPR038508	ArfGAP_dom_sf
IPR045258	ACAP1/2/3-like
IPR037278	ARFGAP/RecO