mRNA_7455 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|164454
Unique NamemRNA_7455
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|164454 vs. uniprot
Match: A0A836CEW5_9STRA (C3H1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEW5_9STRA)

HSP 1 Score: 183 bits (464), Expect = 6.930e-59
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:    1 MCPVIEANRKTELCRNWQNGTCLYGGKCAFAHGQSELTVQTLTEMEKAGRIPNAARFRSNPCMASTWVATGSCPYQVWRVVD 246
            MCPVIEANRKTELCRNWQNGTCLYGGKCAFAHGQSELTVQTLTEMEKAGRIPNAARFRSNPCMASTWVATGSCPYQVWRVVD
Sbjct:    1 MCPVIEANRKTELCRNWQNGTCLYGGKCAFAHGQSELTVQTLTEMEKAGRIPNAARFRSNPCMASTWVATGSCPYQVWRVVD 82
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BLAST of jgi.p|Trimin1|164454 vs. uniprot
Match: D8LHE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE0_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.540e-21
Identity = 42/73 (57.53%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:   10 VIEANRKTELCRNWQNGTCLYGG-KCAFAHGQSELTVQTLTEMEKAGRIPNAARFRSNPCMASTWVATGSCPY 225
            ++  NRKTE+CRNWQ G C+    KCAFAHG  EL  Q+L +ME  GRIPNA++FR  PC+  TW+ TG+CPY
Sbjct:    8 LVSVNRKTEICRNWQQGRCVAEAWKCAFAHGTHELRRQSLDQMEYTGRIPNASKFRCYPCL--TWITTGACPY 78
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BLAST of jgi.p|Trimin1|164454 vs. uniprot
Match: D7FIR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIR3_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.390e-20
Identity = 38/72 (52.78%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:   10 VIEANRKTELCRNWQNGTCLYGGKCAFAHGQSELTVQTLTEMEKAGRIPNAARFRSNPCMASTWVATGSCPY 225
            +IE NRKTELCRN++NG+C +G +CAFAHG  ++  +TL ++EK GRI +A+++++  C+  TWVATG+C Y
Sbjct:   33 IIEHNRKTELCRNYENGSCTFGDRCAFAHGLDDIKHKTLRDLEKEGRIADASKYQA--CLCQTWVATGTCLY 102
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BLAST of jgi.p|Trimin1|164454 vs. uniprot
Match: A0A6A4HWA4_9AGAR (Uncharacterized protein n=1 Tax=Gymnopus androsaceus JB14 TaxID=1447944 RepID=A0A6A4HWA4_9AGAR)

HSP 1 Score: 55.5 bits (132), Expect = 4.620e-8
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    7 PVIEANRKTELCRNWQ-NGTCLYGGKCAFAHGQSELTVQT 123
            PV+   RKTELC NW+  G+C YG KC FAHG+ EL + T
Sbjct:   23 PVLPGKRKTELCVNWEYRGSCRYGAKCQFAHGEEELRMAT 62
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BLAST of jgi.p|Trimin1|164454 vs. uniprot
Match: A0A0G4FHV2_VITBC (C3H1-type domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FHV2_VITBC)

HSP 1 Score: 56.6 bits (135), Expect = 1.950e-7
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   19 ANRKTELCRNWQNGTCLYGGKCAFAHGQSELTVQTLTEME 138
            A  KTELCRNW++GTC +G +CAFAHG+ EL  +T+   E
Sbjct:  153 AKFKTELCRNWKDGTCAHGDQCAFAHGEDELRDKTVITKE 192
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BLAST of jgi.p|Trimin1|164454 vs. uniprot
Match: A0A0D7AIC5_9AGAR (Uncharacterized protein (Fragment) n=2 Tax=Agaricomycetes TaxID=155619 RepID=A0A0D7AIC5_9AGAR)

HSP 1 Score: 52.4 bits (124), Expect = 2.760e-7
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:   28 KTELCRNWQN-GTCLYGGKCAFAHGQSEL-TVQ 120
            KTELCR+W+  GTC YGGKC FAHG+ EL TVQ
Sbjct:    2 KTELCRSWEEKGTCRYGGKCQFAHGEEELRTVQ 34
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BLAST of jgi.p|Trimin1|164454 vs. uniprot
Match: A0A1R2AU08_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2AU08_9CILI)

HSP 1 Score: 53.1 bits (126), Expect = 6.450e-7
Identity = 25/61 (40.98%), Postives = 34/61 (55.74%), Query Frame = 1 
Query:   16 EANRKTELCRNWQNGTCLYGGKCAFAHGQSELTVQTLTEMEKAGRIPNAARFRSNPCMAST 198
            E   KTE+CRNW+ G+C YG KC FAHGQ EL  +      K  +  N   F+   C++ +
Sbjct:   30 ETRFKTEMCRNWEAGSCEYGEKCFFAHGQKELRDKNGVRTMKDQKCENY--FKLGYCLSGS 88
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BLAST of jgi.p|Trimin1|164454 vs. uniprot
Match: D7G0T5_ECTSI (C3H1-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T5_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 6.680e-7
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:   10 VIEANRKTELCRNWQNGTCLYGGKCAFAHGQSELTVQT 123
            +IEANRKT +C++W  G C +G +CAFAHG  EL   T
Sbjct:   30 IIEANRKTAICKHWLQGVCPFGARCAFAHGAKELRNAT 67
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BLAST of jgi.p|Trimin1|164454 vs. uniprot
Match: A0A367J7U0_RHIST (Uncharacterized protein n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367J7U0_RHIST)

HSP 1 Score: 51.6 bits (122), Expect = 1.660e-6
Identity = 22/29 (75.86%), Postives = 23/29 (79.31%), Query Frame = 1 
Query:   28 KTELCRNWQN-GTCLYGGKCAFAHGQSEL 111
            KTE+CRNWQ  GTC YG KC FAHGQ EL
Sbjct:   10 KTEMCRNWQEIGTCRYGHKCRFAHGQEEL 38
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BLAST of jgi.p|Trimin1|164454 vs. uniprot
Match: A0A7S3ILZ4_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidium inclinatum TaxID=197538 RepID=A0A7S3ILZ4_9SPIT)

HSP 1 Score: 50.1 bits (118), Expect = 6.460e-6
Identity = 20/29 (68.97%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:   28 KTELCRNW-QNGTCLYGGKCAFAHGQSEL 111
            KTELC++W ++GTC YG KCAFAHG++EL
Sbjct:   23 KTELCKSWMESGTCKYGDKCAFAHGEAEL 51
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164454 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CEW5_9STRA6.930e-59100.00C3H1-type domain-containing protein n=1 Tax=Tribon... [more]
D8LHE0_ECTSI1.540e-2157.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FIR3_ECTSI1.390e-2052.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6A4HWA4_9AGAR4.620e-857.50Uncharacterized protein n=1 Tax=Gymnopus androsace... [more]
A0A0G4FHV2_VITBC1.950e-757.50C3H1-type domain-containing protein n=1 Tax=Vitrel... [more]
A0A0D7AIC5_9AGAR2.760e-772.73Uncharacterized protein (Fragment) n=2 Tax=Agarico... [more]
A0A1R2AU08_9CILI6.450e-740.98Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
D7G0T5_ECTSI6.680e-755.26C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A367J7U0_RHIST1.660e-675.86Uncharacterized protein n=1 Tax=Rhizopus stolonife... [more]
A0A7S3ILZ4_9SPIT6.460e-668.97Hypothetical protein (Fragment) n=1 Tax=Strombidiu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_31contigContig_31:1051024..1052555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|164454|e_gw1.31.83.1
BRITEko00000,ko00001,ko00536,ko03019,ko04516
KEGG Pathwayko04151,ko04218,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,map04151,map04218,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165
KEGG koko:K06236,ko:K18753
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005938,GO:0044424,GO:0044444,GO:0044464,GO:0071944,GO:0099568
Description3'-UTR-mediated mRNA destabilization
COG categoryK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5063@1|root,KOG1677@2759|Eukaryota
Evalue2.53e-22
Seed ortholog2880.D8LHE0
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, CCCH-type
Ec32 orthologEc-13_000470.1
TranscriptId164776
TrackFilteredModels1
ProteinId164454
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164454gene_7455Tribonema minus UTEX_B_3156 geneContig_31 1051024..1052555 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7455_1exon_7455_1Tribonema minus UTEX_B_3156 exonContig_31 1051024..1051218 +
exon_7455_2exon_7455_2Tribonema minus UTEX_B_3156 exonContig_31 1052502..1052555 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7455CDS_7455Tribonema minus UTEX_B_3156 CDSContig_31 1051024..1051218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164454Trimin1|164454|e_gw1.31.83.1Tribonema minus UTEX_B_3156 polypeptideContig_31 1051024..1052555 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7455 ID=mRNA_7455|Name=jgi.p|Trimin1|164454|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=249bp|location=Sequence derived from alignment at Contig_31:1051024..1052555+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCCCTGTCATCGAAGCCAACAGAAAAACGGAGCTGTGCCGAAACTG
GCAGAACGGTACCTGCCTGTATGGAGGCAAATGCGCCTTTGCGCATGGGC
AATCTGAGCTCACGGTGCAGACTCTCACCGAGATGGAGAAAGCTGGCCGG
ATACCAAATGCAGCCAGATTCCGGTCCAACCCATGCATGGCGAGTACATG
GGTTGCCACTGGAAGCTGCCCCTATCAGGTATGGAGAGTGGTCGACTGA
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protein sequence of jgi.p|Trimin1|164454

>Trimin1|164454|e_gw1.31.83.1 ID=Trimin1|164454|e_gw1.31.83.1|Name=jgi.p|Trimin1|164454|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=83bp
MCPVIEANRKTELCRNWQNGTCLYGGKCAFAHGQSELTVQTLTEMEKAGR
IPNAARFRSNPCMASTWVATGSCPYQVWRVVD*
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mRNA from alignment at Contig_31:1051024..1052555+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7455 ID=mRNA_7455|Name=jgi.p|Trimin1|164454|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1532bp|location=Sequence derived from alignment at Contig_31:1051024..1052555+ (Tribonema minus UTEX_B_3156 )
ATGTGCCCTGTCATCGAAGCCAACAGAAAAACGGAGCTGTGCCGAAACTG
GCAGAACGGTACCTGCCTGTATGGAGGCAAATGCGCCTTTGCGCATGGGC
AATCTGAGCTCACGGTGCAGACTCTCACCGAGATGGAGAAAGCTGGCCGG
ATACCAAATGCAGCCAGATTCCGGTCCAACCCATGCATGGCGAGTGTGCC
ACACTGGGATTCTTTGTCTTAAGTTATTTAATTATAACTATCAGCTCGCA
CAAACTTTAAGGTCGCGCAGCTTTGCAGAAACTTTAAGGTTGCACAGTTT
TGCAGTAATTAATTGAGATTTTTGTGACACTAAGTCTTCCTCTTGCCGTT
ATGAAAGTTGACCACTTTACACTCAGGCGGAGCAGTTTATCGCAGCTGCC
AAGCAGCTAGCTGCTTGGCAACGCCCCCCTTGCTCATCCTGAAGGTCAGG
CTGGCTCTGTACGTTGACCAGCAATTCAATTTGTCAACCGGCGGGGTTTG
CTTAGACGATTTGAAATTGGAAGAAATTATTCAATTATTCAAATAGGATG
AACTTGAGGTCTTGCACTTCTTGAAGGTTCGATGTAGTTCAAGAACTTTG
CAGTTCTGATATTTCAGAGTTCAAGTCGGCACTGGCAGCTTCACAGCTAG
CAGTGCGGTCACTTGGCAACAAGTTGAATGGGCGAATTGTCTCACCTGCT
AGTGTCACGCAACAAGTTGAATGGGCGAATTGTCTCACCTGCTAGTGTCA
TCCTCACTTACACTGCTGGGCGGCCGGGCGCAACGTGTTGTTATCATATC
GGAAAAAAAATTGATCATGTACAAGTGAGTAGTCGGAGCAAATGAATGCG
CCGCGTTGCTGACTGTCTCAGTGTCAACACTGTGACTGGCAGACTTACAT
GAACTTCAAGTTTACGACAGGCTGCCGCAGGCATCCCGCAGGCGCCAGCG
CAGATGCCACGGGCCGACCAAAACATTCTCAACTTGACAGTTACTGTAGT
ATTTACTAGCCTGAGGAGAATCAAGAGACATGTAAGCTAACCCGTAATGC
AACGGTCATTCTCATCATGTAGGTTCACGTCATCACGCATCGTGCAACTG
ACGAGTGCTGGTGCTGATTTATATAAAAACTAGAATATGAGTGATTTCAC
TCACTGACAAGTCCAACACGATCAAAGTGAGTGGCCAGCCTGACTGAGTC
ACCGTGATGGTGGCACAGTGCCGGCCGCTATTGAGGTTGAACTCCAGGCG
GCCAATGTTTGCTCGGCAACGTGCCACATCGTTGTCTGCATCATCGTGCC
ATAGTTCACGTGAATGGTAAGCTGGCATCTACAGATGTTGAAGTCTCAAA
TCTATTGACAATCTTCAAGTTCACGTGGCATGAGCGTGGCCAGGTATTTC
ATGCTCCGCAGTCAGTGGCAATATCAAAATCTCACAGATACAGTTCTCCC
CCTGCCGTCCCTTGTGCTGTCTGCACAGACATGGGTTGCCACTGGAAGCT
GCCCCTATCAGGTATGGAGAGTGGTCGACTGA
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Coding sequence (CDS) from alignment at Contig_31:1051024..1052555+

>mRNA_7455 ID=mRNA_7455|Name=jgi.p|Trimin1|164454|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=249bp|location=Sequence derived from alignment at Contig_31:1051024..1052555+ (Tribonema minus UTEX_B_3156 )
ATGTGCCCTGTCATCGAAGCCAACAGAAAAACGGAGCTGTGCCGAAACTG
GCAGAACGGTACCTGCCTGTATGGAGGCAAATGCGCCTTTGCGCATGGGC
AATCTGAGCTCACGGTGCAGACTCTCACCGAGATGGAGAAAGCTGGCCGG
ATACCAAATGCAGCCAGATTCCGGTCCAACCCATGCATGGCGAGTACATG
GGTTGCCACTGGAAGCTGCCCCTATCAGGTATGGAGAGTGGTCGACTGA
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