mRNA_5370 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|152907 vs. uniprot
Match: A0A835YW24_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW24_9STRA) HSP 1 Score: 223 bits (567), Expect = 7.890e-74 Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1
Query: 1 QGKRSVRKWSPEEDQLMMLLVREHGTRQWGLIGSLLSGRTGKQCRERWHNQLDPMIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRRLS 321
QGKRSVRKWSPEEDQLMMLLVREHGTRQWGLIGSLLSGRTGKQCRERWHNQLDPMIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRRLS
Sbjct: 1 QGKRSVRKWSPEEDQLMMLLVREHGTRQWGLIGSLLSGRTGKQCRERWHNQLDPMIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRRLS 107
BLAST of jgi.p|Trimin1|152907 vs. uniprot
Match: A0A835YSF8_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSF8_9STRA) HSP 1 Score: 210 bits (534), Expect = 1.610e-67 Identity = 101/105 (96.19%), Postives = 102/105 (97.14%), Query Frame = 1
Query: 7 KRSVRKWSPEEDQLMMLLVREHGTRQWGLIGSLLSGRTGKQCRERWHNQLDPMIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRRLS 321
KR VRKWSPEEDQLM LLV+EHGTRQWGLIGSLLSGRTGKQCRERWHNQLDP IKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRRLS
Sbjct: 28 KRVVRKWSPEEDQLMALLVKEHGTRQWGLIGSLLSGRTGKQCRERWHNQLDPHIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRRLS 132
BLAST of jgi.p|Trimin1|152907 vs. uniprot
Match: A0A7S2CJK5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CJK5_9STRA) HSP 1 Score: 181 bits (460), Expect = 5.290e-55 Identity = 83/105 (79.05%), Postives = 94/105 (89.52%), Query Frame = 1
Query: 7 KRSVRKWSPEEDQLMMLLVREHGTRQWGLIGSLLSGRTGKQCRERWHNQLDPMIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRRLS 321
+R VRKW+PEED LMM LV+EHGT+ WG IGS L GRTGKQCRERWHNQLDP I+KD WT EEE+L++AHS++GNRWAEIAKLLPGRTDNA+KNHWNSAKRRLS
Sbjct: 45 RRVVRKWTPEEDSLMMTLVQEHGTKHWGRIGSSLQGRTGKQCRERWHNQLDPAIRKDPWTGGEEEILLKAHSLYGNRWAEIAKLLPGRTDNAVKNHWNSAKRRLS 149
BLAST of jgi.p|Trimin1|152907 vs. uniprot
Match: I2CQ47_NANGC (Myb transcription factor (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQ47_NANGC) HSP 1 Score: 165 bits (417), Expect = 2.310e-50 Identity = 77/107 (71.96%), Postives = 90/107 (84.11%), Query Frame = 1
Query: 1 QGKRSVRKWSPEEDQLMMLLVREHGTRQWGLIGSLLSGRTGKQCRERWHNQLDPMIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRRLS 321
QGK+ VRKWS EED M+ LV+E GT+QWG IG L GR+GKQCRERWHNQLDP IKK+AW+ EEE VL Q H+ +GNRWAEIA+ LPGRTDNAIKNHWN+A+RR+S
Sbjct: 18 QGKKMVRKWSAEEDAEMVRLVKELGTKQWGQIGIQLGGRSGKQCRERWHNQLDPNIKKEAWSAEEEMVLQQKHAEYGNRWAEIARFLPGRTDNAIKNHWNNARRRMS 124
BLAST of jgi.p|Trimin1|152907 vs. uniprot
Match: A0A7S0SQE8_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SQE8_9STRA) HSP 1 Score: 169 bits (428), Expect = 7.800e-50 Identity = 80/104 (76.92%), Postives = 87/104 (83.65%), Query Frame = 1
Query: 7 KRSVRKWSPEEDQLMMLLVREHGTRQWGLIGSLLSGRTGKQCRERWHNQLDPMIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRRL 318
KR+VRKW+ EED LMM LV EHGTR WGLIG+ L+GRTGKQCRERWHNQLDP I K WT EE +L+ AH+ GNRWAEIAK LPGRTDNAIKNHWNSAKRRL
Sbjct: 15 KRTVRKWTQEEDNLMMALVSEHGTRHWGLIGAKLNGRTGKQCRERWHNQLDPAINKTPWTEHEESLLLAAHNDLGNRWAEIAKRLPGRTDNAIKNHWNSAKRRL 118
BLAST of jgi.p|Trimin1|152907 vs. uniprot
Match: W4HCZ2_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HCZ2_9STRA) HSP 1 Score: 166 bits (419), Expect = 3.670e-49 Identity = 76/103 (73.79%), Postives = 88/103 (85.44%), Query Frame = 1
Query: 7 KRSVRKWSPEEDQLMMLLVREHGTRQWGLIGSLLSGRTGKQCRERWHNQLDPMIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRR 315
++S+ KW+PEED LMM LV+ HGTR+W +IGSLLSGR GKQCRERWHNQLDP I+KD WT +EE +L AH +GN+WAEIAKLLPGRTDNAIKNHWNS KRR
Sbjct: 18 RKSISKWTPEEDALMMELVQTHGTRRWSVIGSLLSGRNGKQCRERWHNQLDPSIRKDPWTSDEETLLKVAHHKYGNKWAEIAKLLPGRTDNAIKNHWNSYKRR 120
BLAST of jgi.p|Trimin1|152907 vs. uniprot
Match: A0A024USW0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024USW0_9STRA) HSP 1 Score: 164 bits (415), Expect = 1.360e-48 Identity = 75/103 (72.82%), Postives = 87/103 (84.47%), Query Frame = 1
Query: 7 KRSVRKWSPEEDQLMMLLVREHGTRQWGLIGSLLSGRTGKQCRERWHNQLDPMIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRR 315
++S+ KW+PEED LMM LV+ HGTR+W +IGSLL GR GKQCRERWHNQLDP I+KD WT +EE +L AH +GN+WAEIAKLLPGRTDNAIKNHWNS KRR
Sbjct: 18 RKSISKWTPEEDSLMMELVQTHGTRRWSVIGSLLPGRNGKQCRERWHNQLDPSIRKDPWTTDEETLLKVAHHKYGNKWAEIAKLLPGRTDNAIKNHWNSYKRR 120
BLAST of jgi.p|Trimin1|152907 vs. uniprot
Match: A0A6G0XQ76_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XQ76_9STRA) HSP 1 Score: 163 bits (413), Expect = 1.380e-48 Identity = 75/103 (72.82%), Postives = 88/103 (85.44%), Query Frame = 1
Query: 7 KRSVRKWSPEEDQLMMLLVREHGTRQWGLIGSLLSGRTGKQCRERWHNQLDPMIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRR 315
++ V+KW+PEED LM+ LV+ HGTR+W LIGS+L GR GKQCRERWHNQLDP I+KD WT EEE +L AH+ +GN+WAEIAKLLPGRTDNAIKNHWNS KRR
Sbjct: 13 RKCVQKWTPEEDALMLELVQTHGTRRWSLIGSMLQGRNGKQCRERWHNQLDPNIRKDPWTPEEEMLLKVAHNKYGNKWAEIAKLLPGRTDNAIKNHWNSYKRR 115
BLAST of jgi.p|Trimin1|152907 vs. uniprot
Match: A0A6H5JK21_9PHAE (MYB protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JK21_9PHAE) HSP 1 Score: 169 bits (427), Expect = 7.330e-47 Identity = 82/109 (75.23%), Postives = 91/109 (83.49%), Query Frame = 1
Query: 7 KRSVRKWSPEEDQLMMLLVREHGTRQWGLIGSLLSG----RTGKQCRERWHNQLDPMIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRRLS 321
KR VRKWS +ED M+ LV E G +QWGLIGS LS RTGKQCRERWHNQLDP IKKD WT+ EE+ LM+AHS+HGN+WAEIAK+LPGRTDNAIKNHWNSAKRRLS
Sbjct: 20 KRCVRKWSKQEDAEMVKLVLELGVKQWGLIGSRLSSLGGDRTGKQCRERWHNQLDPAIKKDPWTKAEEDTLMRAHSIHGNKWAEIAKILPGRTDNAIKNHWNSAKRRLS 128
BLAST of jgi.p|Trimin1|152907 vs. uniprot
Match: A0A7R9U0E6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0E6_9STRA) HSP 1 Score: 168 bits (426), Expect = 8.690e-47 Identity = 78/105 (74.29%), Postives = 89/105 (84.76%), Query Frame = 1
Query: 7 KRSVRKWSPEEDQLMMLLVREHGTRQWGLIGSLLSGRTGKQCRERWHNQLDPMIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRRLS 321
KR VRKW+PEED+LMM LV GT++WGLIG L GRTGKQCRERWHNQLDP I+KD W+++EE +L+ H GNRWAEIAKLLPGRTDNAIKNHWNSAKRRL+
Sbjct: 20 KRQVRKWTPEEDKLMMDLVNTFGTKRWGLIGGRLQGRTGKQCRERWHNQLDPSIRKDPWSKQEEAILIVVHQQVGNRWAEIAKLLPGRTDNAIKNHWNSAKRRLT 124 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152907 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5370 ID=mRNA_5370|Name=jgi.p|Trimin1|152907|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=321bp|location=Sequence derived from alignment at Contig_30:456161..456581+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CAGGGCAAACGGAGTGTGAGGAAGTGGTCACCCGAGGAGGACCAGCTAATback to top protein sequence of jgi.p|Trimin1|152907 >Trimin1|152907|gw1.30.188.1 ID=Trimin1|152907|gw1.30.188.1|Name=jgi.p|Trimin1|152907|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=107bp QGKRSVRKWSPEEDQLMMLLVREHGTRQWGLIGSLLSGRTGKQCRERWHNback to top mRNA from alignment at Contig_30:456161..456581+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5370 ID=mRNA_5370|Name=jgi.p|Trimin1|152907|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=421bp|location=Sequence derived from alignment at Contig_30:456161..456581+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_30:456161..456581+ >mRNA_5370 ID=mRNA_5370|Name=jgi.p|Trimin1|152907|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=321bp|location=Sequence derived from alignment at Contig_30:456161..456581+ (Tribonema minus UTEX_B_3156 )back to top |