mRNA_156 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|151931
Unique NamemRNA_156
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|151931 vs. uniprot
Match: A0A835YWI0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWI0_9STRA)

HSP 1 Score: 139 bits (349), Expect = 2.500e-37
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 KECREASCTTAPKFNVPGAGGQWCNKHKKVGMVDVLNTRCQCGLARPSFGLEGDKQPTCC 180
            KECREASCTTAPKFNVPGAGGQWCNKHKKVGMVDVLNTRCQCGLARPSFGLEGDKQPTCC
Sbjct:    1 KECREASCTTAPKFNVPGAGGQWCNKHKKVGMVDVLNTRCQCGLARPSFGLEGDKQPTCC 60
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BLAST of jgi.p|Trimin1|151931 vs. uniprot
Match: A0A835YMK9_9STRA (EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMK9_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.260e-7
Identity = 26/61 (42.62%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:    1 KECREASCTTAPKFNVPGAGGQWCNKHKKVGMVDVLNTRCQCG--LARPSFGLEGDKQPTC 177
            K+CR  +C   P F  P  G QWC KH+K GMVDV++ RC     +   SFG +G ++  C
Sbjct:    1 KQCRVPTCAKLPTFTYPDVGVQWCFKHQKKGMVDVISRRCMHAGRMKIASFGPKGGRRTHC 61
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151931 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YWI0_9STRA2.500e-37100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YMK9_9STRA2.260e-742.62EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:588097..588762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|151931|gw1.3.436.1
Hectar predicted targeting categoryother localisation
TranscriptId152253
TrackFilteredModels1
ProteinId151931
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151931gene_156Tribonema minus UTEX_B_3156 geneContig_3 588097..588762 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_156_1exon_156_1Tribonema minus UTEX_B_3156 exonContig_3 588097..588762 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_156CDS_156Tribonema minus UTEX_B_3156 CDSContig_3 588097..588762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151931Trimin1|151931|gw1.3.436.1Tribonema minus UTEX_B_3156 polypeptideContig_3 588097..588762 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_156 ID=mRNA_156|Name=jgi.p|Trimin1|151931|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=666bp|location=Sequence derived from alignment at Contig_3:588097..588762+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGGAATGCAGGGAGGCGTCATGTACGACGGCACCCAAATTCAACGTTCC
GGGCGCCGGAGGGCAGTGGTGCAATAAGCACAAAAAGGTGGGTATGGTGG
ACGTCCTCAACACGCGCTGCCAGTGCGGCCTAGCACGGCCGTCGTTCGGT
CTAGAGGGCGACAAGCAACCCACTTGCTGTGCAAAATGCAAGAGGATAGG
CATGATCGACATCGTCTCCAGGCGCTGCGAGTGCGGGCAAGCACACCCCT
CCTTCGGCTTCGAGGGCGACGCACGCGCATCTTGCTGTGCTCGATGCAAG
AAGGAGGGCATGATCAACAAAAAGGACCGGCGGTGCGTCTGTGGCAGAGC
ACAACCTTCCTTCGGCTTCGAGGGCGACGCACGCGCCACGTGCTGTGCGC
GCTGTAAGCGGAAGGGGATGACTGACATCGTCACCAGACGCTGTGAGTGC
GGAGGAGCAAAACCGTGCTTTGGTTTTGAGGAGGACAAACGCCCCACTTG
CTGTGCACAATGTAAGCGGAATGGTATGATTGACATCACCAACAAACGCT
GTGAGTGCAGCCAGGCGCAGCCGATATTTGGTTTTGCAGGGGACGCACAC
GCCACATGCTGTGTACGATGTAAAACGGATGGCATGGTGGACATCCGCCA
CGCAAGATGTGAGCAC
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protein sequence of jgi.p|Trimin1|151931

>Trimin1|151931|gw1.3.436.1 ID=Trimin1|151931|gw1.3.436.1|Name=jgi.p|Trimin1|151931|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=222bp
KECREASCTTAPKFNVPGAGGQWCNKHKKVGMVDVLNTRCQCGLARPSFG
LEGDKQPTCCAKCKRIGMIDIVSRRCECGQAHPSFGFEGDARASCCARCK
KEGMINKKDRRCVCGRAQPSFGFEGDARATCCARCKRKGMTDIVTRRCEC
GGAKPCFGFEEDKRPTCCAQCKRNGMIDITNKRCECSQAQPIFGFAGDAH
ATCCVRCKTDGMVDIRHARCEH
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mRNA from alignment at Contig_3:588097..588762+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_156 ID=mRNA_156|Name=jgi.p|Trimin1|151931|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=666bp|location=Sequence derived from alignment at Contig_3:588097..588762+ (Tribonema minus UTEX_B_3156 )
AAGGAATGCAGGGAGGCGTCATGTACGACGGCACCCAAATTCAACGTTCC
GGGCGCCGGAGGGCAGTGGTGCAATAAGCACAAAAAGGTGGGTATGGTGG
ACGTCCTCAACACGCGCTGCCAGTGCGGCCTAGCACGGCCGTCGTTCGGT
CTAGAGGGCGACAAGCAACCCACTTGCTGTGCAAAATGCAAGAGGATAGG
CATGATCGACATCGTCTCCAGGCGCTGCGAGTGCGGGCAAGCACACCCCT
CCTTCGGCTTCGAGGGCGACGCACGCGCATCTTGCTGTGCTCGATGCAAG
AAGGAGGGCATGATCAACAAAAAGGACCGGCGGTGCGTCTGTGGCAGAGC
ACAACCTTCCTTCGGCTTCGAGGGCGACGCACGCGCCACGTGCTGTGCGC
GCTGTAAGCGGAAGGGGATGACTGACATCGTCACCAGACGCTGTGAGTGC
GGAGGAGCAAAACCGTGCTTTGGTTTTGAGGAGGACAAACGCCCCACTTG
CTGTGCACAATGTAAGCGGAATGGTATGATTGACATCACCAACAAACGCT
GTGAGTGCAGCCAGGCGCAGCCGATATTTGGTTTTGCAGGGGACGCACAC
GCCACATGCTGTGTACGATGTAAAACGGATGGCATGGTGGACATCCGCCA
CGCAAGATGTGAGCAC
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Coding sequence (CDS) from alignment at Contig_3:588097..588762+

>mRNA_156 ID=mRNA_156|Name=jgi.p|Trimin1|151931|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=666bp|location=Sequence derived from alignment at Contig_3:588097..588762+ (Tribonema minus UTEX_B_3156 )
AAGGAATGCAGGGAGGCGTCATGTACGACGGCACCCAAATTCAACGTTCC
GGGCGCCGGAGGGCAGTGGTGCAATAAGCACAAAAAGGTGGGTATGGTGG
ACGTCCTCAACACGCGCTGCCAGTGCGGCCTAGCACGGCCGTCGTTCGGT
CTAGAGGGCGACAAGCAACCCACTTGCTGTGCAAAATGCAAGAGGATAGG
CATGATCGACATCGTCTCCAGGCGCTGCGAGTGCGGGCAAGCACACCCCT
CCTTCGGCTTCGAGGGCGACGCACGCGCATCTTGCTGTGCTCGATGCAAG
AAGGAGGGCATGATCAACAAAAAGGACCGGCGGTGCGTCTGTGGCAGAGC
ACAACCTTCCTTCGGCTTCGAGGGCGACGCACGCGCCACGTGCTGTGCGC
GCTGTAAGCGGAAGGGGATGACTGACATCGTCACCAGACGCTGTGAGTGC
GGAGGAGCAAAACCGTGCTTTGGTTTTGAGGAGGACAAACGCCCCACTTG
CTGTGCACAATGTAAGCGGAATGGTATGATTGACATCACCAACAAACGCT
GTGAGTGCAGCCAGGCGCAGCCGATATTTGGTTTTGCAGGGGACGCACAC
GCCACATGCTGTGTACGATGTAAAACGGATGGCATGGTGGACATCCGCCA
CGCAAGATGTGAGCAC
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