mRNA_395 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|54790
Unique NamemRNA_395
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|54790 vs. uniprot
Match: A0A835YSI6_9STRA (14-3-3-like protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSI6_9STRA)

HSP 1 Score: 471 bits (1212), Expect = 2.270e-165
Identity = 242/249 (97.19%), Postives = 247/249 (99.20%), Query Frame = 3
Query:   36 MDRSALVYQAKLAEQAERFDEMVTYMKQVSVQPQELSVEERNLLSVAYKNVIGARRASWRVISSIEQKGEPEKLPLIRDYKKKIETELEEICTEILNIIENELIPNSSATEGKVFYYKMKGDYHRYLSEFQAHDARKESSEKALEAYQHATEWSHQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEGDDAGNDADGTRVEDLP 782
            MDRSALVYQAKLAEQAERFDEMV++MKQVSVQPQELSVEERNLLSVAYKNVIGARRASWRVISSIEQKGEPEKLPLIRDYKKKIETELEEICTEIL IIENELIPNSSATEGKVFYYKMKGDYHRYLSEFQAHDARKESS+KALEAYQHATEWSHQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEGD+AG DADGTRVED+P
Sbjct:    1 MDRSALVYQAKLAEQAERFDEMVSFMKQVSVQPQELSVEERNLLSVAYKNVIGARRASWRVISSIEQKGEPEKLPLIRDYKKKIETELEEICTEILGIIENELIPNSSATEGKVFYYKMKGDYHRYLSEFQAHDARKESSDKALEAYQHATEWSHQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEGDEAGADADGTRVEDMP 249          
BLAST of jgi.p|Trimin1|54790 vs. uniprot
Match: W7TWA9_9STRA (14-3-3-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWA9_9STRA)

HSP 1 Score: 375 bits (962), Expect = 2.420e-127
Identity = 197/247 (79.76%), Postives = 220/247 (89.07%), Query Frame = 3
Query:   42 RSALVYQAKLAEQAERFDEMVTYMKQVSVQPQELSVEERNLLSVAYKNVIGARRASWRVISSIEQKGEPEKLPLIRDYKKKIETELEEICTEILNIIENELIPNSSATEGKVFYYKMKGDYHRYLSEFQAHDARKESSEKALEAYQHATEWSHQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEGDDAG-NDADGTRVEDL 779
            R +LVY+AKLAEQAERFDEMV +MK V+ QPQELSVEERNLLSVAYKNVIG+RRASWRVISSIEQKGE E+LPLIR+YK KIE EL EIC +ILNIIE ELIPNS++ EGKVFY+KMKGDYHRYL+EFQ  + R+ESS+ AL AY+ AT+ +  DLPPTHPIRLGLALNFSVF+YEI NSP+RAC LAK+AFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQ E D+AG N+ DG RVEDL
Sbjct:    4 RDSLVYKAKLAEQAERFDEMVDHMKAVAQQPQELSVEERNLLSVAYKNVIGSRRASWRVISSIEQKGEQERLPLIREYKAKIEDELLEICNDILNIIETELIPNSTSEEGKVFYFKMKGDYHRYLAEFQVGEKRRESSDAALSAYKCATDIAEHDLPPTHPIRLGLALNFSVFFYEIYNSPDRACALAKKAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQNEADEAGANNEDGNRVEDL 250          
BLAST of jgi.p|Trimin1|54790 vs. uniprot
Match: A0A1Z5JP80_FISSO (14-3-3 protein epsilon n=4 Tax=Bacillariophycidae TaxID=33850 RepID=A0A1Z5JP80_FISSO)

HSP 1 Score: 368 bits (944), Expect = 1.060e-124
Identity = 188/236 (79.66%), Postives = 213/236 (90.25%), Query Frame = 3
Query:   36 MDRSALVYQAKLAEQAERFDEMVTYMKQVSVQPQELSVEERNLLSVAYKNVIGARRASWRVISSIEQKGEPEKLPLIRDYKKKIETELEEICTEILNIIENELIPNSSATEGKVFYYKMKGDYHRYLSEFQAHDARKESSEKALEAYQHATEWSHQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEGDDA 743
            MDR ALVY+AKLAEQAERFDEMV+ MK V+ QPQEL+VEERNLLSVAYKNVIG+RRASWRV++SIEQKG+P+K+ +I+DYK KIETEL EIC +IL+IIE+ LIPNS++ E KVFYYKMKGDYHRYLSEFQ  D RKES+  AL+AYQ A+  +  DLPPTHPIRLGLALNFSVFYYEILNSP++AC +AKQAFDDAIAELDTL+EESYKDSTLIMQLLRDNLTLWTSDQ EGDDA
Sbjct:    1 MDREALVYKAKLAEQAERFDEMVSDMKDVARQPQELTVEERNLLSVAYKNVIGSRRASWRVVTSIEQKGDPDKMTIIKDYKAKIETELVEICNDILSIIEDSLIPNSTSEEAKVFYYKMKGDYHRYLSEFQVGDTRKESASAALDAYQAASGIASSDLPPTHPIRLGLALNFSVFYYEILNSPDKACQIAKQAFDDAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSDQAEGDDA 236          
BLAST of jgi.p|Trimin1|54790 vs. uniprot
Match: 1433_FUCVE (14-3-3-like protein n=3 Tax=Phaeophyceae TaxID=2870 RepID=1433_FUCVE)

HSP 1 Score: 362 bits (929), Expect = 2.570e-122
Identity = 195/248 (78.63%), Postives = 217/248 (87.50%), Query Frame = 3
Query:   42 RSALVYQAKLAEQAERFDEMVTYMKQVSVQPQELSVEERNLLSVAYKNVIGARRASWRVISSIEQKGE-PEKLPLIRDYKKKIETELEEICTEILNIIENELIPNSSATEGKVFYYKMKGDYHRYLSEFQAHDARKESSEKALEAYQHATEWSHQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKQAFDDAIAELDTLSEESYKDSTLI-MQLLRDNLTLWTSDQGEGDDAGNDADGTRVEDL 779
            R  LVY AKLAEQAERFDEMV +MK V+ QP+ELSVEERNLLSVAYKNVIG+RRASWRVISSIE K    ++LPLIRDYK KIETEL +IC +IL IIE ELIPNS++ EGKVFYYKMKGDYHRYL+EFQ+ D RK S+  AL+AYQ A++ ++QDLPPTHPIRLGLALNFSVFYYEILNSP+RAC LAK AFDDAIAELDTLSEESYKDSTLI MQLLRDNLTLWTSDQGE ++A  +ADGT VEDL
Sbjct:    4 RDDLVYMAKLAEQAERFDEMVDHMKAVAQQPKELSVEERNLLSVAYKNVIGSRRASWRVISSIEGKDTVSDQLPLIRDYKSKIETELTDICADILKIIEAELIPNSTSEEGKVFYYKMKGDYHRYLAEFQSADERKTSASDALDAYQLASDHANQDLPPTHPIRLGLALNFSVFYYEILNSPDRACGLAKAAFDDAIAELDTLSEESYKDSTLIIMQLLRDNLTLWTSDQGEAEEAPGNADGTVVEDL 251          
BLAST of jgi.p|Trimin1|54790 vs. uniprot
Match: A0A7S1ZMH4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZMH4_TRICV)

HSP 1 Score: 362 bits (929), Expect = 3.170e-122
Identity = 190/247 (76.92%), Postives = 215/247 (87.04%), Query Frame = 3
Query:    9 YGSYRNASNMDRSALVYQAKLAEQAERFDEMVTYMKQVSVQPQELSVEERNLLSVAYKNVIGARRASWRVISSIEQKGEPEKLPLIRDYKKKIETELEEICTEILNIIENELIPNSSATEGKVFYYKMKGDYHRYLSEFQAHDARKESSEKALEAYQHATEWSHQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQ-GEGDDAG 746
            +G  R+   MDR +LVY+AKLAEQAERFD+MV  MK+V+ QPQEL+VEERNLLSVAYKNVIG+RRASWRV++SIEQKG+PEKLP I+DYK KIE EL ++C +IL IIE+ LIPNSS+ E KVFYYKMKGDYHRYLSEFQ   ARKES+  AL+AYQ A+  +  DLPPTHPIRLGLALNFSVFYYEILNSP+RAC++AKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSD  GE D AG
Sbjct:    5 FGLERHTVIMDRDSLVYKAKLAEQAERFDDMVADMKEVAQQPQELTVEERNLLSVAYKNVIGSRRASWRVVTSIEQKGDPEKLPTIKDYKAKIEGELVQVCGDILGIIESSLIPNSSSEEAKVFYYKMKGDYHRYLSEFQTGTARKESASAALDAYQAASGVASADLPPTHPIRLGLALNFSVFYYEILNSPDRACHIAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDNAGEADGAG 251          
BLAST of jgi.p|Trimin1|54790 vs. uniprot
Match: A0A7S1H1R2_9STRA (Hypothetical protein n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H1R2_9STRA)

HSP 1 Score: 362 bits (928), Expect = 5.350e-122
Identity = 192/246 (78.05%), Postives = 214/246 (86.99%), Query Frame = 3
Query:   39 DRSALVYQAKLAEQAERFDEMVTYMKQVSVQPQELSVEERNLLSVAYKNVIGARRASWRVISSIEQKGEPEKLPLIRDYKKKIETELEEICTEILNIIENELIPNSSATEGKVFYYKMKGDYHRYLSEFQAHDARKESSEKALEAYQHATEWSHQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEGDDAGNDADGTRVED 776
            DR  LVY+AKLAEQAERFDEMVT MK+V+ QPQEL+VEERNLLSVAYKNVIGARRASWRV++SIEQKGEP+KLP I+DYK KIE EL +IC +IL+IIE  LI NS++ E KVFYYKMKGDYHRYLSEFQA D+RKES+  AL+AYQ A+  +  DLPPTHPIRLGLALNFSVFYYEILNSP++ACN+AKQAFDDAIAELDTL+EESYKDSTLIMQLLRDNLTLWTSDQ    DAG   D   VED
Sbjct:   19 DRDTLVYKAKLAEQAERFDEMVTDMKEVARQPQELTVEERNLLSVAYKNVIGARRASWRVVTSIEQKGEPDKLPTIKDYKAKIENELVDICNDILSIIEESLIRNSTSEEAKVFYYKMKGDYHRYLSEFQAGDSRKESATSALDAYQAASRIASSDLPPTHPIRLGLALNFSVFYYEILNSPDKACNIAKQAFDDAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSDQAA--DAG---DAPEVED 259          
BLAST of jgi.p|Trimin1|54790 vs. uniprot
Match: A0A8J2SJV0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJV0_9STRA)

HSP 1 Score: 359 bits (922), Expect = 2.960e-121
Identity = 191/249 (76.71%), Postives = 214/249 (85.94%), Query Frame = 3
Query:   33 NMDRSALVYQAKLAEQAERFDEMVTYMKQVSVQPQELSVEERNLLSVAYKNVIGARRASWRVISSIEQKGEPEKLPLIRDYKKKIETELEEICTEILNIIENELIPNSSATEGKVFYYKMKGDYHRYLSEFQAHDARKESSEKALEAYQHATEWSHQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEGDDAGNDADGTRVEDL 779
            N  R  LVY AKLAEQAERFDEMV +MK V+   +ELSVEERNLLSVAYKNVIG+RRASWRVISSIEQK + EK  LI +YKKKIETELE IC +IL IIE  LIPNS+  EGKVFYYKMKGDYHRYL+EFQ+ D RKESS  ALE+YQ A++ +++DLPPTHPIRLGLALNFSVFYYEILNSP+RAC++AKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSD  + +   N+ADGT V+DL
Sbjct:    4 NNTRENLVYLAKLAEQAERFDEMVDHMKSVANYSEELSVEERNLLSVAYKNVIGSRRASWRVISSIEQKSDSEKTALITNYKKKIETELETICEDILGIIEKTLIPNSAGDEGKVFYYKMKGDYHRYLAEFQSADKRKESSSSALESYQQASQIANKDLPPTHPIRLGLALNFSVFYYEILNSPDRACHIAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDNADNNHD-NNADGTAVQDL 251          
BLAST of jgi.p|Trimin1|54790 vs. uniprot
Match: A0A7S1GIM8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GIM8_CYCTE)

HSP 1 Score: 358 bits (919), Expect = 8.160e-121
Identity = 185/241 (76.76%), Postives = 212/241 (87.97%), Query Frame = 3
Query:   36 MDRSALVYQAKLAEQAERFDEMVTYMKQVSVQPQELSVEERNLLSVAYKNVIGARRASWRVISSIEQKGEPEKLPLIRDYKKKIETELEEICTEILNIIENELIPNSSATEGKVFYYKMKGDYHRYLSEFQAHDARKESSEKALEAYQHATEWSHQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEGDDAGNDAD 758
            MDR +LVY+AKLAEQAERFDEMVT MK+V+ QPQEL+VEERNLLSVAYKNVIG+RRASWRV++SIEQKGEP+K+ +I+DYK KIE+EL EIC +IL II+  LIPNS++ E KVFYYKMKGDYHRYLSEFQ  DARK S+  AL+AYQ A+  +  DLPPTHPIRLGLALNFSVFYYEILNSP++AC +AKQAFDDAIAELDTL+EESYKDSTLIMQLLRDNLTLWTSDQ    D G +A+
Sbjct:    6 MDRESLVYKAKLAEQAERFDEMVTDMKEVAKQPQELTVEERNLLSVAYKNVIGSRRASWRVVTSIEQKGEPDKMTIIKDYKAKIESELVEICNDILGIIDESLIPNSTSEEAKVFYYKMKGDYHRYLSEFQIGDARKSSASSALDAYQAASGIASSDLPPTHPIRLGLALNFSVFYYEILNSPDQACQIAKQAFDDAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSDQTAEADDGPEAE 246          
BLAST of jgi.p|Trimin1|54790 vs. uniprot
Match: A0A7S0GLL5_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GLL5_9STRA)

HSP 1 Score: 358 bits (918), Expect = 2.030e-120
Identity = 187/259 (72.20%), Postives = 216/259 (83.40%), Query Frame = 3
Query:    3 DLYGSYRNASNMDRSALVYQAKLAEQAERFDEMVTYMKQVSVQPQELSVEERNLLSVAYKNVIGARRASWRVISSIEQKGEPEKLPLIRDYKKKIETELEEICTEILNIIENELIPNSSATEGKVFYYKMKGDYHRYLSEFQAHDARKESSEKALEAYQHATEWSHQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEGDDAGNDADGTRVEDL 779
            +  G  +N S MDR  LVY+AKLAEQAERFDEMV+ MK V+ QPQEL+VEERNLLSVAYKNVIG+RRASWRV++SIEQKG+ +K+ +IRDYK KIE EL  IC +IL+IIE+ LIPNSS+ E KVFYYKMKGDYHRYLSEFQ  + RKES+  AL+AYQ A+  +  DLPPTHPIRLGLALNFSVFYYEILNSP++AC +AK+AFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSD G  +D    +D    E+L
Sbjct:    6 NFVGRKKNYSKMDRDILVYKAKLAEQAERFDEMVSDMKDVARQPQELTVEERNLLSVAYKNVIGSRRASWRVVTSIEQKGDADKMTIIRDYKNKIEEELVNICNDILSIIEDSLIPNSSSQEAKVFYYKMKGDYHRYLSEFQQAETRKESASNALDAYQAASTIATADLPPTHPIRLGLALNFSVFYYEILNSPDKACEIAKKAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTGAENDGAPPSDEATEENL 264          
BLAST of jgi.p|Trimin1|54790 vs. uniprot
Match: B8BX06_THAPS (14-3-3-like protein n=3 Tax=Thalassiosirales TaxID=33847 RepID=B8BX06_THAPS)

HSP 1 Score: 357 bits (916), Expect = 2.100e-120
Identity = 184/237 (77.64%), Postives = 210/237 (88.61%), Query Frame = 3
Query:   36 MDRSALVYQAKLAEQAERFDEMVTYMKQVSVQPQELSVEERNLLSVAYKNVIGARRASWRVISSIEQKGEPEKLPLIRDYKKKIETELEEICTEILNIIENELIPNSSATEGKVFYYKMKGDYHRYLSEFQAHDARKESSEKALEAYQHATEWSHQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEGDDAG 746
            MDR +LVY+AKLAEQAERFDEMV+ MK+V+ QPQEL+VEERNLLSVAYKNVIG+RRASWRV++SIEQKG+ +K+ +I+DYK KIE EL +IC +IL+IIE  LIPNS++ E KVFYYKMKGDYHRYLSEFQ  D RK S+  AL+AYQ ATE +  DLPPTHPIRLGLALNFSVFYYEILNSP+RAC++AKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQ    +AG
Sbjct:    1 MDRDSLVYKAKLAEQAERFDEMVSDMKEVARQPQELTVEERNLLSVAYKNVIGSRRASWRVVTSIEQKGDADKMSIIKDYKAKIENELCDICNDILSIIEESLIPNSTSEEAKVFYYKMKGDYHRYLSEFQQGDVRKASASAALDAYQSATEVASSDLPPTHPIRLGLALNFSVFYYEILNSPDRACHIAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQAADAEAG 237          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|54790 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSI6_9STRA2.270e-16597.1914-3-3-like protein n=2 Tax=Tribonema minus TaxID=... [more]
W7TWA9_9STRA2.420e-12779.7614-3-3-like protein n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A1Z5JP80_FISSO1.060e-12479.6614-3-3 protein epsilon n=4 Tax=Bacillariophycidae ... [more]
1433_FUCVE2.570e-12278.6314-3-3-like protein n=3 Tax=Phaeophyceae TaxID=287... [more]
A0A7S1ZMH4_TRICV3.170e-12276.92Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1H1R2_9STRA5.350e-12278.05Hypothetical protein n=2 Tax=Thalassionema nitzsch... [more]
A0A8J2SJV0_9STRA2.960e-12176.71Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1GIM8_CYCTE8.160e-12176.76Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S0GLL5_9STRA2.030e-12072.20Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
B8BX06_THAPS2.100e-12077.6414-3-3-like protein n=3 Tax=Thalassiosirales TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:1212555..1216713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|54790|CE54789_2485
BRITEko00000,ko00001,ko03400,ko04147
KEGG Pathwayko04011,ko04110,ko04114,ko04151,ko04390,ko04391,ko04722,ko05169,ko05203,map04011,map04110,map04114,map04151,map04390,map04391,map04722,map05169,map05203
KEGG koko:K06630
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0031410,GO:0031982,GO:0042470,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0048770,GO:0097708
Descriptionprotein domain specific binding
COG categoryT
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5040@1|root,KOG0841@2759|Eukaryota
Evalue2.75e-127
Seed ortholog2880.D7FN58
Hectar predicted targeting categoryother localisation
TranscriptId55112
TrackFilteredModels1
ProteinId54790
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|54790gene_395Tribonema minus UTEX_B_3156 geneContig_3 1212555..1216713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|54790Trimin1|54790|CE54789_2485Tribonema minus UTEX_B_3156 polypeptideContig_3 1212897..1216678 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_395_5exon_395_5Tribonema minus UTEX_B_3156 exonContig_3 1212555..1213016 -
exon_395_4exon_395_4Tribonema minus UTEX_B_3156 exonContig_3 1213745..1214117 -
exon_395_3exon_395_3Tribonema minus UTEX_B_3156 exonContig_3 1215317..1215519 -
exon_395_2exon_395_2Tribonema minus UTEX_B_3156 exonContig_3 1216449..1216494 -
exon_395_1exon_395_1Tribonema minus UTEX_B_3156 exonContig_3 1216671..1216713 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_395UTR3_395Tribonema minus UTEX_B_3156 three_prime_UTRContig_3 1212555..1212896 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_395CDS_395Tribonema minus UTEX_B_3156 CDSContig_3 1216671..1216678 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_395UTR5_395Tribonema minus UTEX_B_3156 five_prime_UTRContig_3 1216679..1216713 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_395 ID=mRNA_395|Name=jgi.p|Trimin1|54790|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1127bp|location=Sequence derived from alignment at Contig_3:1212555..1216713- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGACCTTTACGGAAGCTACAGGAACGCAAGCAACATGGACCGATCAGCA
CTCGTCTACCAGGCCAAGCTCGCCGAGCAGGCGGAGCGGTTCGATGAGAT
GGTGACCTACATGAAGCAGGTCTCCGTGCAGCCCCAGGAGCTTTCCGTGG
AGGAGCGGAACCTTCTTTCCGTGGCGTACAAGAACGTTATCGGCGCGCGC
CGCGCATCGTGGCGCGTGATCTCGTCCATTGAGCAGAAGGGGGAGCCCGA
GAAGCTGCCCCTGATCAGGGACTACAAGAAGAAGATCGAGACCGAGCTGG
AGGAGATCTGCACGGAGATCCTCAACATCATTGAGAACGAGCTCATCCCC
AACTCGTCCGCGACGGAGGGCAAGGTCTTCTACTACAAGATGAAGGGCGA
CTACCACCGCTACCTCAGCGAGTTCCAGGCGCACGACGCACGCAAGGAGA
GTTCCGAGAAGGCTCTCGAGGCGTACCAGCACGCGACGGAGTGGTCCCAC
CAGGATCTGCCCCCCACACACCCCATCCGCCTGGGCCTCGCGCTCAACTT
CTCGGTGTTCTACTACGAGATCCTCAACTCGCCCGAGCGCGCGTGCAACC
TGGCCAAGCAGGCGTTCGACGACGCCATCGCGGAGCTCGACACGCTGTCC
GAAGAATCCTACAAGGACTCCACGCTGATCATGCAGCTGCTGCGCGACAA
CCTGACGCTCTGGACCAGCGACCAAGGAGAGGGCGACGACGCCGGCAACG
ACGCCGACGGAACGCGCGTCGAGGACCTGCCCTAGGCGCGTTCTCTCTCT
CCAGGATCAGTCCACTTTCCCTGTAGAACCGTCCGCTGTACCGCACGCGA
TTGGCCAAATAGGTTCATCTGCTCGGAAACGCTGCCGCACACGCGCGCGG
CGCTTTCTGCCTGGGTTCGGTGCGGTGTTGTTTTGGCTGCCCCACGGGGC
ATTTTGTGCACGGCGAGCTAGGGGGGAGGTGTTGGGACTTCAAGTGTGAA
GTTTCAATGTGTCCACCTGCGCGTGTGGCGTGCCTTGTATAGGGGGTGTT
AAGCAGCGCGTCGCTGCCGCTGCGGCGGGGGGTGACAGCTGCCCTCATGA
CAAATACCATGCTATGTCCTGAAGTGA
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protein sequence of jgi.p|Trimin1|54790

>Trimin1|54790|CE54789_2485 ID=Trimin1|54790|CE54789_2485|Name=jgi.p|Trimin1|54790|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=250bp
MDRSALVYQAKLAEQAERFDEMVTYMKQVSVQPQELSVEERNLLSVAYKN
VIGARRASWRVISSIEQKGEPEKLPLIRDYKKKIETELEEICTEILNIIE
NELIPNSSATEGKVFYYKMKGDYHRYLSEFQAHDARKESSEKALEAYQHA
TEWSHQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKQAFDDAIAE
LDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEGDDAGNDADGTRVEDLP*
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mRNA from alignment at Contig_3:1212555..1216713-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_395 ID=mRNA_395|Name=jgi.p|Trimin1|54790|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4159bp|location=Sequence derived from alignment at Contig_3:1212555..1216713- (Tribonema minus UTEX_B_3156 )
CAGACCTTTACGGAAGCTACAGGAACGCAAGCAACATGGACCGGTAAGCC CCCCGCCTCTGCTGTGCTGCTGTGCATCGCATGCCCTGTCGCACACCGGC AGCACTGCCCTGGCTTGCTTGCTGTGTTGGAGCGTGCCATGGTCGTTTTG GCTCTCGACGTCGTTGCCATGAGAGCTCACACGCAAGTGCCACACGTGCC GCTACCTTGATGCCCGCAGATCAGCACTCGTCTACCAGGCCAAGCTCGCC GAGCAGGCGGAGCGGGTAAGCTGCTGCTGCTATCCTCTTCCTATCGAAAT CCGTCGACGGTTTTCCTAATTGTTGCGGTGGGGGGCAGCCTAGGAGAGCA AGGGTGGGGCGGCGGCGACTAGCCTGGCTCTGTTTTTAAAAGCAAGCTGG ACGATGACCAGCACCGATCCTGGGGGCTGTTGTCACTTGACGCCTTGTAG GTGGTCAAAGATCTGCAACCATGGGGCCGGGCGCGGAGGCAAAAGTTGTT GGGCAAGCTGGCGGGGGACGGGACACGATGAGATGCTCTTCCGTTCACGC TTCTGGCTGTATAGCGGGAGGAGCTAGCGTGCAGGCACTTCCAGCTTGTC GCTGGGTCCTGTTCGCTGAGGTGCTGCGCATTCTGTTTTGCAGAGAACAG CACGTGGAAGCGTAACAGAGGATCGTTGTGTTAGCTTGGTCCCCATACGA TGCCGTTGAGATGGGGGTGGGCTCCACCGCTTTTTGCAGCAGGACAGGGC TGGGGTTTACTTTCACAGTTTTCGTGTGCGCGAGAGCCTCTTGTGACTCC ATGGTCTGTTTTCCTCGTCGTGATCGCTATCCAGCATGTGCAAGCTGCGA TTGCCACGGCTCCGCTGGCCCGCGGCCTGACTGAGCTTCTTCTAACCACA TGTTAAATGTGTTCAGAAAGCTGTCGAGACTGGACAATATGTTGGCTGTA TCCATCAACCAGCGCAGTCGTATTTTTGTTGTCGTCGACACATACATGTA GTGATCACTCAACCAACAGCACACTGGTTTCTCCCAGAGATCAGTACACG TCAGCTCCAGTCAACGTGAGCTGGCAATCAGCGCCCTGCATTTCCATTGT TGCTCGACACTGCTCAGCACTACAGTAGGCCGTGCACTCTATTCTTTCCA GCTCACTCATCGCCACCGGCCTCCATTTCTTTTCTGCTGCGCAGTTCGAT GAGATGGTGACCTACATGAAGCAGGTCTCCGTGCAGCCCCAGGAGCTTTC CGTGGAGGAGCGGAACCTTCTTTCCGTGGCGTACAAGAACGTTATCGGCG CGCGCCGCGCATCGTGGCGCGTGATCTCGTCCATTGAGCAGAAGGGGGAG CCCGAGAAGCTGCCCCTGATCAGGGACTACAAGAAGAAGATCGAGACGTG AGTGTGACTTGTGACTTGTGAGTTTGACTGATCATTTGCCGGCGTGGCAA CAGCGGCGGGCGACGGCGGCGGCGCGCTGAATATTTGTGTCTCGCGAGTT TGACTTTCCTTGCCGGCATAGCGACAGCGGCGGCGGCAGCGTCGCACTGC ACGCCGTTCTCCAGTTTAGCCATGGTGTTGCTTTATTGCGCTTGATCGCT GCCGGCTGGACAAGCATGTGTACAACAGGAACCATTTGCGCGTTGCACTT ACAACATCGCTCAACCAGTATTGGAACGGGCGTCCCCCTCTAGCAAGATC AAACGCGATGTGCACGGAAAACCGTTGTGACAGGGTGACAGAGTGCGTGT GTACGGGGTGCACTTGTGCATATGTGAGAACCTTCATGAAAACGAATCAA AAGATCGTAGAGCTCTAGGTGACAAGGGATGGTTAGCCGCAAGTGCCTTC CACCAATAACCGTGGTCGCCGCTGCTGCAGCAATTGGCCACTTTATATAT GGACCTTTATAACAAACAGTTCTTGGTTGGCGTGGCCTGCCACTTGTTCA GGATGCCGTGACATTGCTCAGTAACTTGCTGTGCGCCACCCACACGCATG CGCCCGTGCGCAGTGCGATTAAGGACGTTCATGTACAGATACGTACCCCC TGAAACAGCACGAGCAACAACTAGCGCGATAAGCGTATTTTACTACGCAC ACGTTTCACGTCAGCACAAAACATACCGTCTGTCATTGTGCGCACAGCGA GCTGGAGGAGATCTGCAGGTCTTGCTCTCCTGGCCACTCTGAAGGGAAGC AAGCTCACGCGCACATGTGCTGCAGGGAGCTCCCACCCATCATTTTAGGA ACAAACTTCACACGCAAAGTGTTGAGGTTGTACTCTTCAAGTAGTACTCA TGAAGTCTGCATGCATTGCCTCTTGCATGCGCAGCCAGCTCAAGGAGATT TGCACGGAGATCCTCAACATAATTGAGAATGCGGTGTGCCCCAAACTTGG TATTTCTATCAGCTTTGAACTTTCGTTCTTGAAGTAACGTTCATGTGTCG TATGACCCCGCGCGCGACAGCGAGCTGGAGGAGATCTGCACGGAGATCCT CAACATCATTGAGAACGAGCTGTACCTCAACTTGTATCATCTTTGAGCTC TTGCTCTTGAAGTAACGTTTATGTGTCATATGATGTGTGCGCGCAGCGAG CTGGAGGAGATCTGCACGGAGATCCTCAACATCATTGAGAACGAGCTCAT CCCCAACTCGTCCGCGACGGAGGGCAAGGTCTTCTACTACAAGATGAAGG GCGACTACCACCGCTACCTCAGCGAGTTCCAGGCGCACGACGCACGCAAG GAGAGTTCCGAGAAGGCTCTCGAGGCGTACCAGCACGCGACGGAGTGGTC CCACCAGGATCTGCCCCCCACACACCCCATCCGCCTGGGCCTCGCGCTCA ACTTCTCGGTGTTCTACTACGAGATCCTCAACTCGCCCGAGCGCGCGTGC AACCTGGCCAAGCAGGCGTTCGACGACGCCATCGCGGAGCTCGACACGCT GTCCGAAGAATCCTACAAGGTATGTATGTAGACCTGTGCATTTGGGTATG TTGACATATGAGTGCGTGTATGCGCGTGCAGCCAAGCACGCGTCATCGCG GAGCTCGACACGCTGTCGGAAGAATCCTACAAGGTATGTAGGGGTATGCA TGCGTGTTTGGCTAGGTTCAGGTTTACATGTTCGAAATGAGGCATGTACG CGCGTGCAGCTAAGCAGGCGTTCGACGACGTCATCGCAGAGGTCGACATT GTTGTCCGAATAATCCTGGGAGGTTTGAATGGTATGCGCGCATCCCGGGT GTATGTGTGCAGGTTCGTGCATGCAACCAAGTTGGTATAGTACGACACTT TCGCGTCCCTCGACTCGGAAAAATTACGTATGGCACGCAGCGTGTATGGG GGGCACCGCTGCACACCTACCTTATGCATGTGTGCATCATGACTGCTGCC AGTAGTGTGTGTGGTGTTGCACTGAGCGGACTCGCAATGGCGGACAGAGC TTTATTGGCTGCGTGTGTGCAGAAATTAAGGTCTTCACTCCGAATGTGCA CCCTGCACTGTTCAGTGACGCATCAGAACGCGGCCTCGCCATGTGACAAG CGGCTAAAGATCGTTCTGAGCAGCATGCCTCAACTTGAAATCCATGTGCT GAATACCCTCAGTGAACATGAACCTACCTACAGTACCTCAGCGTTTTGCA CCACTCTGAGCGCTGACACATCGCTTTCCTTCTAATTCGTTACGCAGGAC TCCACGCTGATCATGCAGCTGCTGCGCGACAACCTGACGCTCTGGACCAG CGACCAAGGAGAGGGCGACGACGCCGGCAACGACGCCGACGGAACGCGCG TCGAGGACCTGCCCTAGGCGCGTTCTCTCTCTCCAGGATCAGTCCACTTT CCCTGTAGAACCGTCCGCTGTACCGCACGCGATTGGCCAAATAGGTTCAT CTGCTCGGAAACGCTGCCGCACACGCGCGCGGCGCTTTCTGCCTGGGTTC GGTGCGGTGTTGTTTTGGCTGCCCCACGGGGCATTTTGTGCACGGCGAGC TAGGGGGGAGGTGTTGGGACTTCAAGTGTGAAGTTTCAATGTGTCCACCT GCGCGTGTGGCGTGCCTTGTATAGGGGGTGTTAAGCAGCGCGTCGCTGCC GCTGCGGCGGGGGGTGACAGCTGCCCTCATGACAAATACCATGCTATGTC CTGAAGTGA
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Coding sequence (CDS) from alignment at Contig_3:1212555..1216713-

>mRNA_395 ID=mRNA_395|Name=jgi.p|Trimin1|54790|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=750bp|location=Sequence derived from alignment at Contig_3:1212555..1216713- (Tribonema minus UTEX_B_3156 )
ATGGACCGATCAGCACTCGTCTACCAGGCCAAGCTCGCCGAGCAGGCGGA
GCGGTTCGATGAGATGGTGACCTACATGAAGCAGGTCTCCGTGCAGCCCC
AGGAGCTTTCCGTGGAGGAGCGGAACCTTCTTTCCGTGGCGTACAAGAAC
GTTATCGGCGCGCGCCGCGCATCGTGGCGCGTGATCTCGTCCATTGAGCA
GAAGGGGGAGCCCGAGAAGCTGCCCCTGATCAGGGACTACAAGAAGAAGA
TCGAGACCGAGCTGGAGGAGATCTGCACGGAGATCCTCAACATCATTGAG
AACGAGCTCATCCCCAACTCGTCCGCGACGGAGGGCAAGGTCTTCTACTA
CAAGATGAAGGGCGACTACCACCGCTACCTCAGCGAGTTCCAGGCGCACG
ACGCACGCAAGGAGAGTTCCGAGAAGGCTCTCGAGGCGTACCAGCACGCG
ACGGAGTGGTCCCACCAGGATCTGCCCCCCACACACCCCATCCGCCTGGG
CCTCGCGCTCAACTTCTCGGTGTTCTACTACGAGATCCTCAACTCGCCCG
AGCGCGCGTGCAACCTGGCCAAGCAGGCGTTCGACGACGCCATCGCGGAG
CTCGACACGCTGTCCGAAGAATCCTACAAGGACTCCACGCTGATCATGCA
GCTGCTGCGCGACAACCTGACGCTCTGGACCAGCGACCAAGGAGAGGGCG
ACGACGCCGGCAACGACGCCGACGGAACGCGCGTCGAGGACCTGCCCTAG
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