Trimin1|354618|estExt_Genemark1.C_Ctg_2940002 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|354618
Unique NameTrimin1|354618|estExt_Genemark1.C_Ctg_2940002
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length157
Homology
BLAST of jgi.p|Trimin1|354618 vs. uniprot
Match: A0A835Z6U4_9STRA (zf-met2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6U4_9STRA)

HSP 1 Score: 191 bits (486), Expect = 6.400e-60
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0
Query:    1 MPESHKAERRRAQKVNRDNGIGDENGRIVRVKDPVRMGKCTVCNLEVRMTKTNTELRTHAESKHGSTMEACFGADVAAAEAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADAVPAATAAMRNGAFGECVMVAAV 156
            MPESHKAERRRAQKVNRDNGIGDENGRIVRVKDPVRMGKCTVCNLEVRMTKTNTELRTHAESKHGSTMEACFGADVAAAEAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADAVPAATAAMRNGAFGECVMVAAV
Sbjct:    1 MPESHKAERRRAQKVNRDNGIGDENGRIVRVKDPVRMGKCTVCNLEVRMTKTNTELRTHAESKHGSTMEACFGADVAAAEAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADAVPAATAAMRNGAFGECVMVAAV 156          
BLAST of jgi.p|Trimin1|354618 vs. uniprot
Match: A0A7S3DVD1_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DVD1_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.120e-24
Identity = 54/84 (64.29%), Postives = 63/84 (75.00%), Query Frame = 0
Query:    1 MPESHKAERRRAQKVNRDNGIGDENGRIVRVKDPVRMGKCTVCNLEVRMTKTNTELRTHAESKHGSTMEACF-GADVAAAEAEA 83
            MPES+KA ++R QK NR  GIGDENGR+VR K+P +M KCTVC  E+ +TKTNTEL  HA SKHGST+E CF GA   AAE  A
Sbjct:   32 MPESNKAAKKRIQKANRAAGIGDENGRLVREKEPPKMSKCTVCQQELVITKTNTELTAHATSKHGSTIEVCFPGAQETAAELRA 115          
BLAST of jgi.p|Trimin1|354618 vs. uniprot
Match: A0A7S4N5C1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N5C1_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 4.490e-23
Identity = 50/81 (61.73%), Postives = 60/81 (74.07%), Query Frame = 0
Query:    1 MPESHKAERRRAQKVNRDNGIGDENGRIVRVKDPVRMGKCTVCNLEVRMTKTNTELRTHAESKHGSTMEACF-GADVAAAE 80
            MPES+KA +RR QK NR  GIGDE GR+VRVKD  +M  CT+C  E+++TKTNTEL  HA SKHG T++ CF GA   AAE
Sbjct:    1 MPESNKAAKRRIQKANRKAGIGDETGRLVRVKDAPKMATCTICQFEMKITKTNTELTAHATSKHGKTLDECFPGAAKIAAE 81          
BLAST of jgi.p|Trimin1|354618 vs. uniprot
Match: A0A7S1UT83_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UT83_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.270e-22
Identity = 50/84 (59.52%), Postives = 61/84 (72.62%), Query Frame = 0
Query:    1 MPESHKAERRRAQKVNRDNGIGDENGRIVRVKDPVRMGKCTVCNLEVRMTKTNTELRTHAESKHGSTMEACF-GADVAAAEAEA 83
            MP S+   ++R QK NR  GIGDE+GRIVRVKDP ++ KCT+C LE+ +TKTNTEL  HA SKHG T++ CF GA   AAE  A
Sbjct:    1 MPASNATAKKRQQKQNRALGIGDESGRIVRVKDPPKISKCTICQLEMTITKTNTELTAHATSKHGKTLDECFPGAATVAAELVA 84          
BLAST of jgi.p|Trimin1|354618 vs. uniprot
Match: A0A6U3SV84_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SV84_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 6.980e-22
Identity = 50/84 (59.52%), Postives = 63/84 (75.00%), Query Frame = 0
Query:    1 MPESHKAERRRAQKVNRDNGIGDENGRIVRVKDPVRMGKCTVCNLEVRMTKTNTELRTHAESKHGSTMEACF-GADVAAAEAEA 83
            MPES+ A ++R  K NR  GIGDE GRIV+ KDP +M  C+VC  E+++TKTNTEL+ H+ESKHGST++ACF GA   AAE  A
Sbjct:    1 MPESNAAAKKRQFKANRAAGIGDETGRIVQQKDPPKMMNCSVCQHEMKITKTNTELKMHSESKHGSTLDACFPGAAAIAAELAA 84          
BLAST of jgi.p|Trimin1|354618 vs. uniprot
Match: A0A1E7FA32_9STRA (zf-met2 domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FA32_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.030e-14
Identity = 44/85 (51.76%), Postives = 54/85 (63.53%), Query Frame = 0
Query:    1 MPESHKAERRRAQKVNRDNGIGDENGRIV-RVKDPVRMGKCTVCNLEVRMTKTNTELRTHAESKHGSTMEACF-GADVAAAEAEA 83
            MPES+K    R  K NR  G+GDE GR+  RVK    M  C +C  E+++TKTNTEL+ HAE KHG T+E CF GA+  A E  A
Sbjct:    1 MPESNKGANARRLKANRAAGVGDETGRLPSRVKTEAIMICCEICKSELKVTKTNTELKLHAEGKHGKTLEECFVGAEGHAKEINA 85          
BLAST of jgi.p|Trimin1|354618 vs. uniprot
Match: A0A448ZCJ3_9STRA (zf-met2 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZCJ3_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.190e-14
Identity = 42/82 (51.22%), Postives = 52/82 (63.41%), Query Frame = 0
Query:    1 MPESHKAERRRAQKVNRDNGIGDENGRI-VRVKDPVRMGKCTVCNLEVRMTKTNTELRTHAESKHGSTMEACFGADVAAAEA 81
            MP+S+K       K NR  GIGDE GR+  RVK   +M  C VC  E++ TKTNTE++ HAESKHG T+E CF    A A+A
Sbjct:    1 MPQSNKGLNAARLKANRAAGIGDEMGRLPARVKAEAKMICCLVCKAELKCTKTNTEMKLHAESKHGKTLEECFPGATAEAKA 82          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354618 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A835Z6U4_9STRA6.400e-60100.00zf-met2 domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S3DVD1_9STRA1.120e-2464.29Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S4N5C1_9STRA4.490e-2361.73Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1UT83_9STRA1.270e-2259.52Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A6U3SV84_9STRA6.980e-2259.52Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1E7FA32_9STRA1.030e-1451.76zf-met2 domain-containing protein n=1 Tax=Fragilar... [more]
A0A448ZCJ3_9STRA2.190e-1451.22zf-met2 domain-containing protein n=1 Tax=Pseudo-n... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026939ZNF706/At2g23090 superfamilyGENE3D4.10.1050.10coord: 3..75
e-value: 7.7E-8
score: 34.6
IPR039438At2g23090-like, zinc-binding domainPFAMPF12907zf-met2coord: 39..72
e-value: 2.3E-4
score: 21.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableSUPERFAMILY118359Expressed protein At2g23090/F21P24.15coord: 29..72

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_294contigContig_294:16588..19478 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354618mRNA_18765Tribonema minus UTEX_B_3156 mRNAContig_294 16388..19478 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|354618|estExt_Genemark1.C_Ctg_2940002 ID=Trimin1|354618|estExt_Genemark1.C_Ctg_2940002|Name=jgi.p|Trimin1|354618|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=157bp
MPESHKAERRRAQKVNRDNGIGDENGRIVRVKDPVRMGKCTVCNLEVRMT
KTNTELRTHAESKHGSTMEACFGADVAAAEAEAAAAAAAAAAPAGKKAGG
GGGGGGKKGGGGDLSALLAAGLAGGAAAAGGADAVPAATAAMRNGAFGEC
VMVAAV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR026939ZNF706/At2g23090_sf
IPR039438At2g23090-like_Znf