mRNA_9549 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|164087
Unique NamemRNA_9549
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|164087 vs. uniprot
Match: A0A835Z1L1_9STRA (D5_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1L1_9STRA)

HSP 1 Score: 789 bits (2037), Expect = 1.440e-288
Identity = 388/388 (100.00%), Postives = 388/388 (100.00%), Query Frame = 1
Query:    1 MGVVHCLTALVRDKTFLNLLDADKDVLSVTDGVVDLRTATLRPRVRGDYLIYALSTPFDPEHPELHTIEKWMKDVTLSERLGRPEYLEFMQRLIGYSITGHTREEIIVMFIGNGANSKGVLHELLSDVLESLYYAAPRSIIVQTARGGAGAASSDMAALNGKRIGAVDEMPDEPLNDTQFRLLAGGAGIPARELYSAQASFKNLCQIILNFNFPVQMRITHATLRRIMACPFDMQALPVVPMSGAALDPTNPRHILLDIKMKGNLSRAAFFSWAVAGAKKWYEEGLGPHPKCCADLRSHIMDDNADVGMWIAERCEVGEGLMASTKMAWNDFCASRPEGNNITNASFRVEMGRRGFHIAQATRTQLRDKRCCHGLKIAGHIYDQNAAV 1164
            MGVVHCLTALVRDKTFLNLLDADKDVLSVTDGVVDLRTATLRPRVRGDYLIYALSTPFDPEHPELHTIEKWMKDVTLSERLGRPEYLEFMQRLIGYSITGHTREEIIVMFIGNGANSKGVLHELLSDVLESLYYAAPRSIIVQTARGGAGAASSDMAALNGKRIGAVDEMPDEPLNDTQFRLLAGGAGIPARELYSAQASFKNLCQIILNFNFPVQMRITHATLRRIMACPFDMQALPVVPMSGAALDPTNPRHILLDIKMKGNLSRAAFFSWAVAGAKKWYEEGLGPHPKCCADLRSHIMDDNADVGMWIAERCEVGEGLMASTKMAWNDFCASRPEGNNITNASFRVEMGRRGFHIAQATRTQLRDKRCCHGLKIAGHIYDQNAAV
Sbjct:    1 MGVVHCLTALVRDKTFLNLLDADKDVLSVTDGVVDLRTATLRPRVRGDYLIYALSTPFDPEHPELHTIEKWMKDVTLSERLGRPEYLEFMQRLIGYSITGHTREEIIVMFIGNGANSKGVLHELLSDVLESLYYAAPRSIIVQTARGGAGAASSDMAALNGKRIGAVDEMPDEPLNDTQFRLLAGGAGIPARELYSAQASFKNLCQIILNFNFPVQMRITHATLRRIMACPFDMQALPVVPMSGAALDPTNPRHILLDIKMKGNLSRAAFFSWAVAGAKKWYEEGLGPHPKCCADLRSHIMDDNADVGMWIAERCEVGEGLMASTKMAWNDFCASRPEGNNITNASFRVEMGRRGFHIAQATRTQLRDKRCCHGLKIAGHIYDQNAAV 388          
BLAST of jgi.p|Trimin1|164087 vs. uniprot
Match: A0A835Z1H9_9STRA (SF3 helicase domain-containing protein (Fragment) n=6 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1H9_9STRA)

HSP 1 Score: 203 bits (516), Expect = 2.470e-58
Identity = 133/362 (36.74%), Postives = 190/362 (52.49%), Query Frame = 1
Query:   31 VRDKTFLNLLDADKDVLSVTDGVVDLRTATLRPRVRGDYLIYALSTPFDPEHPELHTIEKWMKDVTLS--ERLGRPEYLEFMQRLIGYSITGHTREEIIVMFIGNGA-NSKGVLHELLSDVLESLYYAAPRSIIVQTARGGAGAASSDMAALNGKRIGAVDEMPDEPLNDTQF-RLLAGGAGIPARELYSAQASFKNLCQIILNFNFPVQMRITHATLRRIMACPFDMQALPVVPMSGAA---LDPTNPRHILLDIKMKGNLSRAAFFSWAVAGAKKWYEEGLGPHPKCCADLRSHIMDDNADVGMWIAERCEVG--EG------LMASTKMAWNDFCASR-PEGNNITNASFRVEMGRRGF 1068
            VRD+ F  LLD +KD+ S  +GVV+L TATLRPRVR D L  A++  ++ + P +  + + + D+TL+   RL RP  LE + R++GYSITGH REEIIV  +G  A N KG++  LL  VL  ++Y AP+S +       AG+ASS M AL G R+  +DE+P     D Q  + ++GGA I  REL+  Q SF        N N    ++   A ++RI   P D +        G A    D  +  H + + K++ NL   AF +  V  AK+WYE GLG  P CC         +N  +  WI + CE+G  EG      L +S    +N++ A + P    I       +M  +GF
Sbjct:    7 VRDEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHVREEIIVFLLGRSARNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGSASSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPIIKAEPAIMQRIEIIPCDAKFR----TPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAGVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALILCSSAFSGYNNYRARQEPALPPIKKRDMHEQMAAKGF 364          
BLAST of jgi.p|Trimin1|164087 vs. uniprot
Match: A0A835YS19_9STRA (D5_N domain-containing protein n=5 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS19_9STRA)

HSP 1 Score: 188 bits (477), Expect = 4.450e-49
Identity = 136/387 (35.14%), Postives = 193/387 (49.87%), Query Frame = 1
Query:   31 VRDKTFLNLLDADKDVLSVTDGVVDLRTATLRPRVRGDYLIYALSTPFDPEHPELHTIEKWMKDVTLS--ERLGRPEYLEFMQRLIGYSITGHTREEIIVMFIGNGA-NSKGVLHELLSDVLESLYYAAPRSIIVQTARGGAGAASSDMAALNGKRIGAVDEMPDEPLNDTQFRLLAGGAGIPARELYSAQASFKNLCQIILNFNFPVQMRITHATLRRIMACPFDMQALPVVPMSGAA---LDPTNPRHILLDIKMKGNLSRAAFFSWAVAGAKKWYEEGLGPHPKCCADLRSHIMDDNADVGMWIAERCEVG--EG------LMASTKMAWNDFCASR-PEGNNITNASFRVEMGRRGF-HIAQATRTQLRDK-RCCH-GLKIAG 1137
            +RD+ F  LLD +KD+ S  +GVV+L TATLRPRVR D L  A++  ++ + P +  + + + D+TL+   RL RP  LE + R++GYSITGH REEIIV  +G  A N KG++  LL  VL  ++Y AP+S +       AGAASS M AL       VD            + ++GGA I  REL+  Q SF        N N    ++   A ++RI   P D +        G A    D  +  H + + K++ NL   AF +  V  AK+WYE GLG  P CC         +N  +  WI + CE+G  EG      L +S    +N+  A + P    I       +M  +GF  I    +   +D  +C + GLK AG
Sbjct:  612 IRDEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHVREEIIVFLLGCSARNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAASSHMMALRATGGRCVDAQ--------MIKYISGGADISGRELFGKQTSFSPTAVPRANTNEMPIIKAEPAIMQRIEIIPCDAKFR----TPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALILCSSAFSGYNNSRARQEPALPPIKKRDMHEQMAAKGFAKIDDYRKAHSQDNCKCVYAGLKSAG 986          
BLAST of jgi.p|Trimin1|164087 vs. uniprot
Match: A0A835Z0P8_9STRA (SF3 helicase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0P8_9STRA)

HSP 1 Score: 154 bits (388), Expect = 2.470e-37
Identity = 107/392 (27.30%), Postives = 183/392 (46.68%), Query Frame = 1
Query:   37 DKTFLNLLDADKDVLSVTDGVVDLRTATLRPRVRGDYLIYALSTPFDPEHPELHTIEKWMKDVTLSERL-------------------GRPEYLEFMQRLIGYSITGHTREEIIVMFIGNGANSKGVLHELLSDVLESLYYAAPRSIIVQTARGGAGAASSDMAALNGKRIGAVDEMPDE-PLNDTQFRLLAGGAGIPARELYSAQ-ASFKNLCQIILNFNFPVQMRITHATLRRIMACPFDMQALPVVPMSGAALDPTNPRHILLDIKMKGNLSRAAFFSWAVAGAKKWYEEGLGPHPKCCADLRSHIMDDNADVGMWIAERCEVGEGLMASTKMAWNDFCAS------RPEGNNITNASFRVEMGRRGFHIAQATRTQLRDKRCCHGLKI 1131
            D+ F   LD + ++LSV +GVVDLRT  LR R   DY  YA+  P+ P+H  L  + + ++ +TL++R                    G  +  + +QR++GYSITG+ R + +  F+G G+N K  +  L    +  +Y  A   ++   +    G AS  + AL GKR+G + E   +  LN+  +R L G   + AR LY     SF+N C+I L  N    + ++ +++RR+ A  F+ + +P  P +    D T+P H L     +  LSR A+ ++ + GA  +  +G    P C       I  ++  +  +  E  +  +G  A      +D   +      +  G  +   +F+  M  +GF   +A   + RDK     L++
Sbjct:  452 DEDFAERLDRNPELLSVANGVVDLRTGQLRERRFDDYFTYAIEVPYVPDHEGLPAVVQLVRQMTLADRATEVKEGKWGSEWQASPIFDGCDKMPDMLQRVLGYSITGYIRHQALFAFLGGGSNGKSAITNLTKWAVRPIYTQASVDLLKHGSEN-TGGASPHIIALRGKRLGVISEWDSKYTLNERNYRTLTGDDELLARALYQKDLVSFENWCKIWLVVNELPNLDLSLSSMRRLFAMWFEAKFVPDDPSAPVPFDKTDPTHFLQVQDFEKGLSREAWLAFMIEGAGMYLADGFPAKPPCMTRFMDQIRSESDPLSGFFDEHVDT-DGRTAEDAERVDDVYRAYASYVDKMRGKAMNIKAFKKAMDSKGFKCIRAKTQEHRDKWVFRRLRL 841          
BLAST of jgi.p|Trimin1|164087 vs. uniprot
Match: A0A1Y1INW7_KLENI (SF3 helicase domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1INW7_KLENI)

HSP 1 Score: 132 bits (331), Expect = 3.290e-30
Identity = 112/363 (30.85%), Postives = 163/363 (44.90%), Query Frame = 1
Query:   37 DKTFLNLLDADKDVLSVTDGVVDLRTATLRPRVRGDYLIYALSTPFDPEHPELHTIEKWMKDVTLSERLGRPEYLEFMQRLIGYSITGHTREEIIVMFIGNGANSKGVLHELLSDVLESLYYAAPRSIIVQTARG----GAGAASSDMAALNGKRIGAVDEMPDEPLNDTQFRL-LAGGAGIPARELYSAQASFKNLCQIILNFNFPVQMRITHATL----RRIMACPFDMQALPVVPMSGAALDPTNPRHILLD----IKMKGNLSRAAFFSWAVAGAKKWYE--EGLGPHPKCCADLRSHIMDDNADVGMWIAERCEVGEGLMASTKMAWNDFCASRPEGNNITNASFRVEMGRRGFHIAQ 1080
            D  F   LDAD D+L+V +GV+ LRT  L       +      T F         ++ ++ D+   +     E ++++++L GY++ GHTREE+ V+ +G G N KG L E+L  V    Y    +  +V TA G       A ++ +  L GKR+   DE  +    D    L + GG  I AR L+     F       +  N+P  +  T A L    RR+ A PF     P   +   ALDPTN  H L D     +MK   SR    +W   G+ +WY   EGLG  PK   D     + +   + ++I + CEVGEGL  ST  A    C  +     I+N      M  +GF  A+
Sbjct:  204 DLDFAQQLDADPDILNVKNGVLLLRTGELDVHRPQYFCSKIAETDFMGMEYPTPRMDAFIGDIFNHDA----ELVDYIRKLFGYALNGHTREEVFVLLLGKGGNGKGALKEMLQAVAGDYYGTMSKDAVV-TAPGQRAPSKNAPTNYLYELMGKRLAITDETAEGEQVDLGLVLAVTGGGSIKARCLHINNVEFVVTHTPFVQTNYPPVISAT-AILDNVERRLRAIPF-----PNTYVRENALDPTNATHRLRDDHLKARMKEEESRRQILTWLARGSVEWYASAEGLGSPPKAVKDATDEYLREADKLQLFIDQHCEVGEGL--STLQAEFAACFRQYSSERISNEELMRRMATKGFKRAK 553          
BLAST of jgi.p|Trimin1|164087 vs. uniprot
Match: A0A2J7ZPR0_9CHLO (Putative helicase n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZPR0_9CHLO)

HSP 1 Score: 130 bits (328), Expect = 1.840e-29
Identity = 108/351 (30.77%), Postives = 157/351 (44.73%), Query Frame = 1
Query:   46 FLNLLDADKDVLSVTDGVVDLRTATLRPRVRGDYLIYALSTPFDPEHPELHTIEKWMKDVTLSERLGRPEYLEFMQRLIGYSITGHTREEIIVMFIGNGANSKGVLHELLSDVLESLYYAAPRSIIVQTARGGAGAASSDMAALNGKRIGAVDEM-PDEPLNDTQFRLLAGGAGIPARELYSAQASF--KNLCQIILNFNFPVQMRITHATLRRIMACPFDMQALPVVPMSGAALDPTNPRHILLDIKMKGNLSR--AAFFSWAVAGAKKWYEEGLGPHPKCCADLR-----SHIMDDNADVGMWIAERCEVGEGLMASTKMAWNDFCASRPEGNNITNASFRVEMGRRGF 1068
            F   LD+   +L V +GVVDLRT  LR R   D L       +DP+        K   +V L+      E   ++Q+L+GY ITG   +E+  +F G+G N KGV+ + LS +L SLY      II        GA   + A L G RI   +E+ P E L   + +LL+GG GIPA+ LY    +   ++LC +  N + P    +  A + R++  PF +       + GA  +PT  R    D  +K  L +  AA   W V GA  WY     P  K  A L+         +D   +  +I +RC  G  L   T +    F      G  +++      MG +GF
Sbjct:  423 FEQTLDSIPHLLGVQNGVVDLRTGELRQRRAADNLFAICPVHYDPD-----ASSKIFHEVILAAMADDEEMARYLQKLLGYGITGEVCQEVFPVFTGSGRNCKGVITQTLSSLLGSLYQEMEVGIITDRQVSNIGA---ERAKLLGARIALFNELRPKEKLKTNEVQLLSGGDGIPAKALYKDPMTLLPRHLCILSTN-HMPELSEVIPAIMERLLCVPFQVT---FTDLDGA--EPTLYRR-QCDTTLKTRLKQNPAAVLKWFVEGAVAWY---ASPDLKKTAPLKVRDFSRRYFEDQDKLACFIRDRCRTGSDLKTPTSVFLQSF--QEHAGVRLSSRELATVMGHKGF 753          
BLAST of jgi.p|Trimin1|164087 vs. uniprot
Match: A0A1Y1IN63_KLENI (SF3 helicase domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IN63_KLENI)

HSP 1 Score: 130 bits (326), Expect = 3.940e-29
Identity = 113/364 (31.04%), Postives = 166/364 (45.60%), Query Frame = 1
Query:   37 DKTFLNLLDADKDVLSVTDGVVDLRTATLRPRVRGDYLIYALS-TPFDPEHPELHTIEKWMKDVTLSERLGRPEYLEFMQRLIGYSITGHTREEIIVMFIGNGANSKGVLHELLSDVLESLYYAAPRSIIVQTARG----GAGAASSDMAALNGKRIGAVDEMPDEPLNDTQFRL-LAGGAGIPARELYSAQASFKNLCQIILNFNFPVQMRITHATL----RRIMACPFDMQALPVVPMSGAALDPTNPRHILLDIKMKGNL----SRAAFFSWAVAGAKKWYE--EGLGPHPKCCADLRSHIMDDNADVGMWIAERCEVGEGLMASTKMAWNDFCASRPEGNNITNASFRVEMGRRGFHIAQ 1080
            D  F   LDAD D+L+V +GV+ LRT  L    R  Y+   ++ T F         ++ ++ D+   +     E ++++++L GY++ GHTREE+ V+ +G G N KG L E+L  V    Y    +  +V TA G       A ++ +  L GKR+   DE  +    D    L +  G  I AR LY     F       +  N+P  +  T A L    RR+ A PF     P   +   A DPTN  H L D  +KG +    SR    +W   G+ +WY   EGLG  PK   D     + +     ++I + CEVGEGL  ST  A    C ++     I+    R  M  +GF  A+
Sbjct:  660 DFDFAQQLDADPDILNVKNGVLLLRTGELDVH-RPQYMCSKIAETDFMGMEFPTPRMDAFIGDIFNHDA----ELVDYVRKLFGYALNGHTREEVFVLLLGKGGNGKGALKEMLQAVAGDYYGTMSKDAVV-TAPGQRAPSKNAPTNYLYELMGKRLAITDETAEGEQVDLGLVLAVTEGGSIKARCLYINNVEFVVTHTPFVQTNYPPVISAT-AILDNVERRLRAIPF-----PNTYVRANAFDPTNATHRLRDDNLKGRMKEEESRRQILTWLARGSVEWYASAEGLGSPPKAVKDATDEYLREADKFQLFIDQHCEVGEGL--STLQAEFAACYAQYSTERISYEELRRRMDTKGFKRAK 1009          
BLAST of jgi.p|Trimin1|164087 vs. uniprot
Match: A0A1S1HQM3_PROST (SF3 helicase domain-containing protein n=3 Tax=Providencia TaxID=586 RepID=A0A1S1HQM3_PROST)

HSP 1 Score: 124 bits (310), Expect = 4.220e-27
Identity = 99/387 (25.58%), Postives = 180/387 (46.51%), Query Frame = 1
Query:    1 MGVVHCLTALVRDKTFLNLLDADKD--VLSVTDGVVDLRTATLRPRVRGDYLIYALSTPFDPEHPELHTIEKWMKDVTLSERLGRPEYLEFMQRLIGYSITGHTREEIIVMFIGNGANSKGVLHELLSDVLESLYYAAPRSIIVQTARGGAGAASSDMAALNGKRIGAVDEMPDEP-LNDTQFRLLAGGAGIPARELYSA-QASFKNLCQIILNFNF-PVQMRITHATLRRIMACPFDMQALPVVPMSGAALDPTNPRHILLDIKMKGNLSRAAFFSWAVAGAKKWYEEGLGPHPKCCADLRSHIMDDNADVGMWIAERCEVGEGLMASTKMAWNDFCASRPEGNN--ITNASFRVEMGRRGFHIAQATRTQLRDKRCCHGLKIAGH 1140
            +  +  +  LV+ K  +  +D D D  +L V +GV+DL T   R   R D++       F+P + +  T E+++ D+T+    G  E   F+QRL+GY +TG T E+++  F G+G+N K    +++  ++ S  YA   +  V      +G  ++ +A L GKR+   +E+P+   L+DT  + + GG  + AR++Y   +  F++   +++  N  P    ++H   RR+   PF          + A +DP  P  + L  +M+G L+      WA+AG + W+ EGL           ++     +D+     E C +      +    ++ F +   EGN   +T   F  +M  RGF      + +  +K    G+ +  H
Sbjct:  441 LSKLKAMIELVKPKLEVRTIDLDADPMLLGVANGVIDLNTGEYRENRRLDFITRYTPVDFNP-NAKCPTWERFINDITV----GDMELASFLQRLVGYFLTGRTDEQLLFFFYGHGSNGKSTFIQIIQSLMGS--YATQINSDVLMMNKNSGGPNASLAKLPGKRLVVANELPENGRLDDTLIKAMTGGDTLVARQVYGKHELEFQSQFSLVIIGNHKPAIYDMSHGMWRRMCLIPFAAN------FTAAEIDPELP--VKLSREMQGILN------WALAGVQAWHAEGLKRSLPAAVIAANNEYRQESDLIGEFLEGCRLEPDAYTAASDLYSAFLSFASEGNEWRMTQRIFTKKMVERGFE-----KIRRNNKASFRGIALIDH 801          
BLAST of jgi.p|Trimin1|164087 vs. uniprot
Match: A0A1Y1IPQ1_KLENI (SF3 helicase domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IPQ1_KLENI)

HSP 1 Score: 118 bits (296), Expect = 7.850e-27
Identity = 93/290 (32.07%), Postives = 133/290 (45.86%), Query Frame = 1
Query:  253 EYLEFMQRLIGYSITGHTREEIIVMFIGNGANSKGVLHELLSDVLESLYYAAPRSIIVQTARG----GAGAASSDMAALNGKRIGAVDEMPDEPLNDTQFRLLAGGAGIP-ARELYSAQASFKNLCQIILNFNFPVQM---RITHATLRRIMACPFDMQALPVVPMSGAALDPTNPRHILLDI----KMKGNLSRAAFFSWAVAGAKKWYE--EGLGPHPKCCADLRSHIMDDNADVGMWIAERCEVGEGLMASTKMAWNDFCASRPEGNNITNASFRVEMGRRGFHIAQ 1080
            E ++++++L GY+I GHTRE+I V+ +G G N KG L E+L  V+   Y    +  +V TA G       A ++ +  L G R+   DE  +E   D    L   G+G   AR L++    F       +  N+P  +    I     RR+ A PF     P   +   A DPTN  H L D     +MK   SR    SW   G+ +WY+  EGLG  PK   D     + +   + M+I + CEVGEGL  ST  A    C  +     I+    R  M  +GF  A+
Sbjct:   14 ELVDYVRKLFGYAINGHTREDIFVLLLGAGGNGKGALKEMLQAVVGDYYGTMSKDAVV-TAPGQKASSKNAPTNHIYELMGVRLAVTDETAEEDQVDLGIVLAMTGSGTTKARCLHTNNVEFTVTHTPFVQTNYPPAICATAIKDNVERRLRAIPF-----PNTYVDANAFDPTNVTHRLRDNHLKERMKEEESRRQILSWLARGSVEWYDSAEGLGSPPKAVKDATDEYLREADKLQMFIDQHCEVGEGL--STLQAEFAACYGQYSSKRISYEELRRRMDTKGFKRAK 295          
BLAST of jgi.p|Trimin1|164087 vs. uniprot
Match: UPI001009C8A5 (phage/plasmid primase, P4 family n=1 Tax=Bradyrhizobium guangzhouense TaxID=1325095 RepID=UPI001009C8A5)

HSP 1 Score: 120 bits (302), Expect = 1.580e-26
Identity = 96/348 (27.59%), Postives = 158/348 (45.40%), Query Frame = 1
Query:   58 LDADKDVLSVTDGVVDLRTATLRPRVRGDYLIYALSTPFDPEHPELHTIEKWMKDVTLSERLGRPEYLEFMQRLIGYSITGHTREEIIVMFIGNGANSKGVLHELLSDVLESLYYAAPRSIIVQTARGGAGAASSDMAALNGKRIGAVDEMPD-EPLNDTQFRLLAGGAGIPARELYSAQASFKNLCQIILNFNF-PVQMRITHATLRRIMACPFDMQALPVVPMSGAALDPTNPRHILLDIKMKGNLSRA-AFFSWAVAGAKKWYEEGLGPHPKCCADLRSHIMDDNADVGMWIAERCEVGEGLMASTKMAWNDF--CASRPEGNNITNASFRVEMGRRGFHIAQAT 1086
            LDAD  +L V +G V+L+T   R   R D +       +D    +    ++++  VT ++     +   ++QR+IGY +TG  REE + +  G+G N K    E + D++ +   A   +++V+  R   G+AS ++A L GKR  AV+E  + + LN+++ + +     I AR LY     F    ++ L  N  PV         RR+   PF +                NP  +  D + K  +       +WA+ G   +   GL P     A  + +  D +  VG WIAERC   +G    +  A+ND+   A+   G ++T   FR  +  RGF  A+ T
Sbjct:  127 LDADPWLLGVKNGAVELKTGAFRLARRSDLITKCAGVAYDAA-ADCPCWKQFLATVTAND----VDLQHYLQRVIGYVLTGSVREEAMWVLYGSGRNGKSTFRETIHDLIGTYSLAGDATLMVE--RKTPGSASEEIARLKGKRFIAVNETAENDQLNESRLKFITSQDMITARNLYGHFFDFFPTHKLFLTTNHKPVVRGTDEGIWRRLQLVPFVVSI--------------NPNAVERDFREKRLVPELPGILNWALTGLSDYLTHGLNPPGSVLASTQEYRSDMDV-VGQWIAERCRAEQGASMPSGHAYNDYQTWANEELGWSLTKLKFRRHLTDRGFTAAKGT 452          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164087 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1L1_9STRA1.440e-288100.00D5_N domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835Z1H9_9STRA2.470e-5836.74SF3 helicase domain-containing protein (Fragment) ... [more]
A0A835YS19_9STRA4.450e-4935.14D5_N domain-containing protein n=5 Tax=Tribonema m... [more]
A0A835Z0P8_9STRA2.470e-3727.30SF3 helicase domain-containing protein n=1 Tax=Tri... [more]
A0A1Y1INW7_KLENI3.290e-3030.85SF3 helicase domain-containing protein n=1 Tax=Kle... [more]
A0A2J7ZPR0_9CHLO1.840e-2930.77Putative helicase n=1 Tax=Tetrabaena socialis TaxI... [more]
A0A1Y1IN63_KLENI3.940e-2931.04SF3 helicase domain-containing protein n=1 Tax=Kle... [more]
A0A1S1HQM3_PROST4.220e-2725.58SF3 helicase domain-containing protein n=3 Tax=Pro... [more]
A0A1Y1IPQ1_KLENI7.850e-2732.07SF3 helicase domain-containing protein n=1 Tax=Kle... [more]
UPI001009C8A51.580e-2627.59phage/plasmid primase, P4 family n=1 Tax=Bradyrhiz... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_29contigContig_29:116896..118062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|164087|e_gw1.29.2.1
BRITEko00000
KEGG koko:K06919
DescriptionTIGRFAM phage plasmid primase, P4 family, C-terminal domain
COG categoryL
Max annot lvl203682|Planctomycetes
EggNOG OGsCOG3378@1|root,COG3378@2|Bacteria,2IYDX@203682|Planctomycetes
Evalue3.82e-27
Seed ortholog1210884.HG799463_gene10182
Hectar predicted targeting categoryother localisation
TranscriptId164409
TrackFilteredModels1
ProteinId164087
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164087gene_9549Tribonema minus UTEX_B_3156 geneContig_29 116896..118062 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9549_1exon_9549_1Tribonema minus UTEX_B_3156 exonContig_29 116896..118062 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9549CDS_9549Tribonema minus UTEX_B_3156 CDSContig_29 116896..118062 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164087Trimin1|164087|e_gw1.29.2.1Tribonema minus UTEX_B_3156 polypeptideContig_29 116896..118062 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9549 ID=mRNA_9549|Name=jgi.p|Trimin1|164087|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1167bp|location=Sequence derived from alignment at Contig_29:116896..118062- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGTCGTGCACTGCCTGACGGCTCTCGTGCGCGACAAGACCTTCCT
CAACCTTCTCGACGCCGACAAGGACGTCCTGAGCGTCACGGACGGCGTCG
TGGATCTGCGGACCGCGACGCTGCGCCCCCGCGTGCGCGGCGACTACCTC
ATCTACGCCCTCAGCACCCCCTTCGACCCCGAGCACCCTGAGCTTCACAC
CATCGAGAAGTGGATGAAGGATGTGACGCTCAGCGAGAGGCTTGGCAGGC
CGGAGTACCTCGAGTTCATGCAGCGGCTCATCGGCTACAGCATCACCGGC
CACACGCGCGAGGAGATCATCGTCATGTTCATAGGTAACGGAGCCAACAG
CAAGGGCGTCCTCCACGAGCTGCTGAGCGACGTGCTGGAGAGCCTCTACT
ACGCGGCTCCGCGGAGCATCATCGTGCAGACCGCACGGGGGGGAGCCGGC
GCGGCGTCGTCCGACATGGCGGCGCTCAACGGCAAGCGCATCGGGGCCGT
GGACGAGATGCCGGACGAGCCGTTGAACGACACGCAGTTCCGTCTGCTGG
CCGGAGGCGCCGGCATCCCTGCGCGGGAGCTCTACTCTGCGCAGGCCTCG
TTCAAGAATCTGTGCCAGATAATCTTGAACTTCAACTTTCCGGTCCAGAT
GCGCATCACGCACGCCACCTTGCGCCGTATCATGGCGTGCCCTTTCGACA
TGCAAGCGCTCCCGGTCGTCCCCATGAGCGGCGCGGCGCTCGATCCCACC
AACCCCCGCCACATCCTGCTCGACATCAAGATGAAGGGCAACCTGTCCCG
CGCCGCCTTCTTCAGCTGGGCGGTCGCGGGCGCGAAGAAGTGGTACGAGG
AGGGGTTGGGACCGCACCCGAAGTGCTGCGCAGATCTCAGGTCCCACATC
ATGGACGACAACGCCGATGTGGGGATGTGGATCGCGGAGCGCTGCGAGGT
GGGCGAGGGGTTGATGGCGTCGACGAAGATGGCTTGGAATGACTTCTGCG
CAAGCAGGCCCGAGGGCAACAACATCACCAACGCCTCTTTCAGAGTTGAA
ATGGGTAGGAGGGGGTTCCACATAGCTCAGGCGACCAGAACGCAGCTCCG
CGACAAGCGGTGCTGCCACGGCCTCAAGATCGCGGGCCACATCTATGACC
AGAACGCAGCTGTGTGA
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protein sequence of jgi.p|Trimin1|164087

>Trimin1|164087|e_gw1.29.2.1 ID=Trimin1|164087|e_gw1.29.2.1|Name=jgi.p|Trimin1|164087|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=389bp
MGVVHCLTALVRDKTFLNLLDADKDVLSVTDGVVDLRTATLRPRVRGDYL
IYALSTPFDPEHPELHTIEKWMKDVTLSERLGRPEYLEFMQRLIGYSITG
HTREEIIVMFIGNGANSKGVLHELLSDVLESLYYAAPRSIIVQTARGGAG
AASSDMAALNGKRIGAVDEMPDEPLNDTQFRLLAGGAGIPARELYSAQAS
FKNLCQIILNFNFPVQMRITHATLRRIMACPFDMQALPVVPMSGAALDPT
NPRHILLDIKMKGNLSRAAFFSWAVAGAKKWYEEGLGPHPKCCADLRSHI
MDDNADVGMWIAERCEVGEGLMASTKMAWNDFCASRPEGNNITNASFRVE
MGRRGFHIAQATRTQLRDKRCCHGLKIAGHIYDQNAAV*
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mRNA from alignment at Contig_29:116896..118062-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9549 ID=mRNA_9549|Name=jgi.p|Trimin1|164087|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1167bp|location=Sequence derived from alignment at Contig_29:116896..118062- (Tribonema minus UTEX_B_3156 )
ATGGGCGTCGTGCACTGCCTGACGGCTCTCGTGCGCGACAAGACCTTCCT CAACCTTCTCGACGCCGACAAGGACGTCCTGAGCGTCACGGACGGCGTCG TGGATCTGCGGACCGCGACGCTGCGCCCCCGCGTGCGCGGCGACTACCTC ATCTACGCCCTCAGCACCCCCTTCGACCCCGAGCACCCTGAGCTTCACAC CATCGAGAAGTGGATGAAGGATGTGACGCTCAGCGAGAGGCTTGGCAGGC CGGAGTACCTCGAGTTCATGCAGCGGCTCATCGGCTACAGCATCACCGGC CACACGCGCGAGGAGATCATCGTCATGTTCATAGGTAACGGAGCCAACAG CAAGGGCGTCCTCCACGAGCTGCTGAGCGACGTGCTGGAGAGCCTCTACT ACGCGGCTCCGCGGAGCATCATCGTGCAGACCGCACGGGGGGGAGCCGGC GCGGCGTCGTCCGACATGGCGGCGCTCAACGGCAAGCGCATCGGGGCCGT GGACGAGATGCCGGACGAGCCGTTGAACGACACGCAGTTCCGTCTGCTGG CCGGAGGCGCCGGCATCCCTGCGCGGGAGCTCTACTCTGCGCAGGCCTCG TTCAAGAATCTGTGCCAGATAATCTTGAACTTCAACTTTCCGGTCCAGAT GCGCATCACGCACGCCACCTTGCGCCGTATCATGGCGTGCCCTTTCGACA TGCAAGCGCTCCCGGTCGTCCCCATGAGCGGCGCGGCGCTCGATCCCACC AACCCCCGCCACATCCTGCTCGACATCAAGATGAAGGGCAACCTGTCCCG CGCCGCCTTCTTCAGCTGGGCGGTCGCGGGCGCGAAGAAGTGGTACGAGG AGGGGTTGGGACCGCACCCGAAGTGCTGCGCAGATCTCAGGTCCCACATC ATGGACGACAACGCCGATGTGGGGATGTGGATCGCGGAGCGCTGCGAGGT GGGCGAGGGGTTGATGGCGTCGACGAAGATGGCTTGGAATGACTTCTGCG CAAGCAGGCCCGAGGGCAACAACATCACCAACGCCTCTTTCAGAGTTGAA ATGGGTAGGAGGGGGTTCCACATAGCTCAGGCGACCAGAACGCAGCTCCG CGACAAGCGGTGCTGCCACGGCCTCAAGATCGCGGGCCACATCTATGACC AGAACGCAGCTGTGTGA
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Coding sequence (CDS) from alignment at Contig_29:116896..118062-

>mRNA_9549 ID=mRNA_9549|Name=jgi.p|Trimin1|164087|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1167bp|location=Sequence derived from alignment at Contig_29:116896..118062- (Tribonema minus UTEX_B_3156 )
ATGGGCGTCGTGCACTGCCTGACGGCTCTCGTGCGCGACAAGACCTTCCT
CAACCTTCTCGACGCCGACAAGGACGTCCTGAGCGTCACGGACGGCGTCG
TGGATCTGCGGACCGCGACGCTGCGCCCCCGCGTGCGCGGCGACTACCTC
ATCTACGCCCTCAGCACCCCCTTCGACCCCGAGCACCCTGAGCTTCACAC
CATCGAGAAGTGGATGAAGGATGTGACGCTCAGCGAGAGGCTTGGCAGGC
CGGAGTACCTCGAGTTCATGCAGCGGCTCATCGGCTACAGCATCACCGGC
CACACGCGCGAGGAGATCATCGTCATGTTCATAGGTAACGGAGCCAACAG
CAAGGGCGTCCTCCACGAGCTGCTGAGCGACGTGCTGGAGAGCCTCTACT
ACGCGGCTCCGCGGAGCATCATCGTGCAGACCGCACGGGGGGGAGCCGGC
GCGGCGTCGTCCGACATGGCGGCGCTCAACGGCAAGCGCATCGGGGCCGT
GGACGAGATGCCGGACGAGCCGTTGAACGACACGCAGTTCCGTCTGCTGG
CCGGAGGCGCCGGCATCCCTGCGCGGGAGCTCTACTCTGCGCAGGCCTCG
TTCAAGAATCTGTGCCAGATAATCTTGAACTTCAACTTTCCGGTCCAGAT
GCGCATCACGCACGCCACCTTGCGCCGTATCATGGCGTGCCCTTTCGACA
TGCAAGCGCTCCCGGTCGTCCCCATGAGCGGCGCGGCGCTCGATCCCACC
AACCCCCGCCACATCCTGCTCGACATCAAGATGAAGGGCAACCTGTCCCG
CGCCGCCTTCTTCAGCTGGGCGGTCGCGGGCGCGAAGAAGTGGTACGAGG
AGGGGTTGGGACCGCACCCGAAGTGCTGCGCAGATCTCAGGTCCCACATC
ATGGACGACAACGCCGATGTGGGGATGTGGATCGCGGAGCGCTGCGAGGT
GGGCGAGGGGTTGATGGCGTCGACGAAGATGGCTTGGAATGACTTCTGCG
CAAGCAGGCCCGAGGGCAACAACATCACCAACGCCTCTTTCAGAGTTGAA
ATGGGTAGGAGGGGGTTCCACATAGCTCAGGCGACCAGAACGCAGCTCCG
CGACAAGCGGTGCTGCCACGGCCTCAAGATCGCGGGCCACATCTATGACC
AGAACGCAGCTGTGTGA
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