mRNA_9568 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|155425 vs. uniprot
Match: A0A836CFK5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFK5_9STRA) HSP 1 Score: 312 bits (799), Expect = 6.340e-108 Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1 Query: 1 QPPLSWYAAVFAHRKWENITLVTEPVEQLEHHPFATLLPALLHRPYVTMVQSSNDFKEDMRTLLCARNLVTARSSVQSLLLWHNQHLRSAYGTHGHAGCTNARTTIPLLVSQRPDVSFYVMGGEWAGNYSPYSSWQNTYEQRLEMLT 441 QPPLSWYAAVFAHRKWENITLVTEPVEQLEHHPFATLLPALLHRPYVTMVQSSNDFKEDMRTLLCARNLVTARSSVQSLLLWHNQHLRSAYGTHGHAGCTNARTTIPLLVSQRPDVSFYVMGGEWAGNYSPYSSWQNTYEQRLEMLT Sbjct: 1 QPPLSWYAAVFAHRKWENITLVTEPVEQLEHHPFATLLPALLHRPYVTMVQSSNDFKEDMRTLLCARNLVTARSSVQSLLLWHNQHLRSAYGTHGHAGCTNARTTIPLLVSQRPDVSFYVMGGEWAGNYSPYSSWQNTYEQRLEMLT 147
BLAST of jgi.p|Trimin1|155425 vs. uniprot
Match: A0A6H5K2F3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2F3_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 6.240e-16 Identity = 53/149 (35.57%), Postives = 77/149 (51.68%), Query Frame = 1 Query: 1 QPPLSWYAAVFAHRKWENITLVTEPVEQLEHHPFATLLPALLHR---PYVTMVQSSNDFKEDMRTLLCARNLVTARSSVQSLLLWHNQHLRSAYGTHGHAGCTNARTTIPLLVSQRPDVSFYVMGGEWAGNYSPYSSWQNTYEQRLEML 438 QPPL +Y V H W+++ +VT E +P L A++ P V ++ +ED+ ++ CA L ARS++ SL +H++ R YG H C + L+ RP+V Y G +WAG Y Y SW+NT EQR EML Sbjct: 374 QPPLQFYLQVIQHADWDSVDIVTNSQEHDGLNPVIPALQAMVDAGDLPDSVHVHTNRTMEEDLLSMFCADGLALARSTLVSLTGFHSKAKR-VYGPHQ---CNAQFKQLALI---RPEVQAY--GIDWAGEYGVYKSWENTPEQREEML 513
BLAST of jgi.p|Trimin1|155425 vs. uniprot
Match: D8LSV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSV7_ECTSI) HSP 1 Score: 73.6 bits (179), Expect = 2.550e-13 Identity = 52/153 (33.99%), Postives = 73/153 (47.71%), Query Frame = 1 Query: 1 QPPLSWYAAVFAHRKWENITLVTEPVEQLEHHPFATLLPALLHRPYVTMVQS---SNDFKEDMRTLLCARNLVTARSSVQSLLLWHNQHLRSAYGTHGHAGCTNARTTIPLLVSQRPDVSFYVMGGEWA---GNYSPYSSWQNTYEQRLEMLT 441 +PPL +Y V R W NI+++T Q E +P +L L + + + D D+R +LCA N+V A+SS+ LL+ H++ R T G + + RPDV Y G EW YS Y W NT QRLEM+T Sbjct: 39 KPPLQFYLKVIGSRPWSNISVLTNARIQREFNPTFGVLQELDKQGLLGAPANFYPDRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARG---GPFFVDRICLYRPDVEVY--GIEWKTTLNEYSVYDEWINTDAQRLEMIT 186
BLAST of jgi.p|Trimin1|155425 vs. uniprot
Match: A0A6H5L0Z0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z0_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 2.720e-13 Identity = 55/155 (35.48%), Postives = 73/155 (47.10%), Query Frame = 1 Query: 1 QPPLSWYAAVFAHRKWENITLVTEPVEQLEHHPFATLLP-----ALLHRPYVTMVQSSNDFKEDMRTLLCARNLVTARSSVQSLLLWHNQHLRSAYGTHGHAGCTNARTTIPLLVSQRPDVSFYVMGGEWA---GNYSPYSSWQNTYEQRLEMLT 441 QPPL +Y V R W NI+++T Q E +P +L LL P + D D+R +LCA N+V A+SS+ LL+ H++ R T G + + RPDV Y G EW YS Y W NT QRLEM+T Sbjct: 261 QPPLQFYLKVIGSRPWSNISVLTNARIQREFNPTFGVLQELDKQGLLGAP--ANFYADRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARG---GPFFVDRICLYRPDVEVY--GIEWKTTLNEYSVYDEWINTDAQRLEMIT 408
BLAST of jgi.p|Trimin1|155425 vs. uniprot
Match: D7G610_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G610_ECTSI) HSP 1 Score: 63.2 bits (152), Expect = 7.690e-9 Identity = 44/149 (29.53%), Postives = 69/149 (46.31%), Query Frame = 1 Query: 1 QPPLSWYAAVFAHRKWENITLVTEPVEQLEHHPFATLLPALLHR---PYVTMVQSSNDFKEDMRTLLCARNLVTARSSVQSLLLWHNQHLRSAYGTHGHAGCTNARTTIPLLVSQRPDVSFYVMGGEWAGNYSPYSSWQNTYEQRLEML 438 QPPL +Y + + W+ I +VT +P L A+ P + ED++++LCA +L A+SS+ + L +H+ R Y C + + L RP Y + + +G+YS Y W+NT EQR EML Sbjct: 252 QPPLQFYLLLMQDQPWDRIDVVTNGQNWDNVNPVVPALMAMRATGALPDNVYFHTERSMGEDLQSMLCADSLGLAKSSLVNFLSYHSTANRVYYPWR----CNHDLRELARL---RPKTKVYGLQLDRSGSYSVYRHWENTPEQRAEML 393
BLAST of jgi.p|Trimin1|155425 vs. uniprot
Match: D7FHC1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHC1_ECTSI) HSP 1 Score: 58.2 bits (139), Expect = 4.610e-7 Identity = 48/150 (32.00%), Postives = 77/150 (51.33%), Query Frame = 1 Query: 1 QPPLSWYAAVFAHRKWENITLVTE-PVEQLEHHPFATLLPALLHRPYV-TMVQSSND--FKEDMRTLLCARNLVTARSSVQSLLLWHNQHLRSAYGTHGHAGCTNARTTIPL--------LVSQRPDVSFYVMGGEWAGN---YSPYSSW 405 QPPL ++ AV A +KW+ ++++T P +QL +P +++ L + Y+ T V D F D++T+LCA NL + S++ +LLL H++ R GC T+ L + QRP+V Y G +W Y+ Y SW Sbjct: 396 QPPLGYFLAVIASKKWDYLSVLTSGPDKQL--NPTYSVIAELNRQGYLGTNVGMHKDRSFWVDLQTMLCADNLALSHSTLSNLLLAHSRAKRFFLPW----GCEPQPWTLKLNRFVNASMICLQRPEVQVY--GIDWRTTKDAYTVYDSW 537
BLAST of jgi.p|Trimin1|155425 vs. uniprot
Match: A0A6H5JNM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNM4_9PHAE) HSP 1 Score: 53.9 bits (128), Expect = 1.290e-5 Identity = 45/150 (30.00%), Postives = 78/150 (52.00%), Query Frame = 1 Query: 1 QPPLSWYAAVFAHRKWENITLVTE-PVEQLEHHPFATLLPALLHRPYV-TMVQSSND--FKEDMRTLLCARNLVTARSSVQSLLLWHNQHLRSAYGTHGHAGCTNARTTIPL--------LVSQRPDVSFYVMGGEW---AGNYSPYSSW 405 QPPL ++ AV A +KW+ ++++T P +QL +P +++ L + ++ T V+ D F ED++ +LCA +L + S++ +LLL H++ R GC T+ L + QRP+V G +W + Y+ Y SW Sbjct: 271 QPPLGYFLAVIASKKWDYLSVLTSGPDKQL--NPTYSVIAELNRQGFLGTNVEMHKDRSFWEDLQAMLCADSLALSHSTLSNLLLAHSRAKRFFLPW----GCEPQPWTLKLNRFVNASMICLQRPEV----YGIDWRTTSDAYTVYDSW 410
BLAST of jgi.p|Trimin1|155425 vs. uniprot
Match: A0A7S3EZI5_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EZI5_9EUKA) HSP 1 Score: 52.0 bits (123), Expect = 6.120e-5 Identity = 38/104 (36.54%), Postives = 52/104 (50.00%), Query Frame = 1 Query: 148 VQSSNDFKEDMRTLLCARNLVTARSSVQSLLLWHNQHLRSAYGTHGHAGCTNARTTIPLLVSQRPDVSFYVMGGE--WA----GNYSPYSSWQNTYEQRLEMLT 441 + ++ FKED+ LLCAR+L+ A SS+ SLLL +R Y G C++ R + S Y+ G W G YS +W N+ EQR EMLT Sbjct: 357 LSANESFKEDLTQLLCARSLLLADSSLNSLLL-AGSSVRDVYFFSGSVPCSS----YAKHSCGRTNSSLYLQGTRRYWCVAVNGKYSVAVNWLNSEEQRNEMLT 455
BLAST of jgi.p|Trimin1|155425 vs. uniprot
Match: A0A7S3AYY4_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AYY4_9EUKA) HSP 1 Score: 51.6 bits (122), Expect = 7.240e-5 Identity = 52/178 (29.21%), Postives = 74/178 (41.57%), Query Frame = 1 Query: 1 QPPLSWYAAVFAHRKWEN------ITLVTEP------VEQLEHHPFATLLPALLHR-PYVTMVQSSNDFKEDMRTLLCARNLVTARSSVQSLLLWHNQHLRSAYGTHG--HAGCTNART-------------TIPLLVSQRPDVSFYVMGGEWA----GNYSPYSSWQNTYEQRLEML 438 QPPL++Y AH + LVT P V+ L+H A LH Y +V +S+ ++D++ LLCARNLV A SS+ +L + LR Y H H T + + P Q + W +YSP S W N+ Q++EML Sbjct: 129 QPPLAFYLRAMAHALPAPPEPPGVVYLVTSPDLANPVVKLLKHQ-------AQLHALRYKLVVSASSSLQDDLKLLLCARNLVLAASSMGTLFM-DGPRLRKTYSFHHSCHKNTTGQSSYGNVALAPEGQCESAPAWCVQNATCTGAYGVQNWCVHPEQSYSPLSKWNNSDAQQVEML 298 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155425 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9568 ID=mRNA_9568|Name=jgi.p|Trimin1|155425|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=441bp|location=Sequence derived from alignment at Contig_29:338568..339059+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CAACCACCCCTGAGCTGGTATGCGGCCGTATTTGCACACCGCAAATGGGAback to top protein sequence of jgi.p|Trimin1|155425 >Trimin1|155425|gw1.29.100.1 ID=Trimin1|155425|gw1.29.100.1|Name=jgi.p|Trimin1|155425|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=147bp QPPLSWYAAVFAHRKWENITLVTEPVEQLEHHPFATLLPALLHRPYVTMVback to top mRNA from alignment at Contig_29:338568..339059+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9568 ID=mRNA_9568|Name=jgi.p|Trimin1|155425|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=492bp|location=Sequence derived from alignment at Contig_29:338568..339059+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_29:338568..339059+ >mRNA_9568 ID=mRNA_9568|Name=jgi.p|Trimin1|155425|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=441bp|location=Sequence derived from alignment at Contig_29:338568..339059+ (Tribonema minus UTEX_B_3156 )back to top |