mRNA_8984 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163896
Unique NamemRNA_8984
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|163896 vs. uniprot
Match: A0A835Z5F7_9STRA (DUSP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5F7_9STRA)

HSP 1 Score: 164 bits (416), Expect = 1.270e-51
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:    1 MAFLEIDFARVHIEEEGRVVGEVLDSANVLPGTVWQVVSEEWMAQWRKFVQSRGARRYLPPGPITNGELLMRQEVVKEVK 240
            MAFLEIDFARVHIEEEGRVVGEVLDSANVLPGTVWQVVSEEWMAQWRKFVQSRGARRYLPPGPITNGELLMRQEVVKEVK
Sbjct:    1 MAFLEIDFARVHIEEEGRVVGEVLDSANVLPGTVWQVVSEEWMAQWRKFVQSRGARRYLPPGPITNGELLMRQEVVKEVK 80
[Close]
BLAST of jgi.p|Trimin1|163896 vs. uniprot
Match: A0A7S2UUX4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUX4_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 7.740e-24
Identity = 42/74 (56.76%), Postives = 54/74 (72.97%), Query Frame = 1 
Query:    1 MAFLEIDFARVHIEEEGRVVGEVLDSANVLPGTVWQVVSEEWMAQWRKFVQSRGARRYLPPGPITNGELLMRQE 222
            M FL ID+ARVH EEEGR+V  +LD+A+   G+ W +V+E W+ +WRKFV SRGARRY PPGPI N  L   ++
Sbjct:    8 MEFLGIDYARVHYEEEGRIVSGILDTASKPSGSEWHLVNERWLRKWRKFVLSRGARRYFPPGPIDNSRLFKTEK 81
[Close]
BLAST of jgi.p|Trimin1|163896 vs. uniprot
Match: A0A7S4E9Y7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E9Y7_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.190e-19
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:    1 MAFLEIDFARVHIEEEGRVVGEVLDSANVLPGTVWQVVSEEWMAQWRKFVQSRGARRYLPPGPITNGELL 210
            +AFLEID ARVHIEE+GRV  ++LDS + + G+VW +V E W+ +WRKFV  R ARRY PPGPI+N  LL
Sbjct:  244 LAFLEIDAARVHIEEDGRV-SKMLDSTSQVSGSVWHMVDEFWLKKWRKFVLGRAARRYEPPGPISNEHLL 312
[Close]
BLAST of jgi.p|Trimin1|163896 vs. uniprot
Match: A0A7S3JQL3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQL3_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.340e-17
Identity = 39/75 (52.00%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:    1 MAFLEIDFARVHIEEEGRVVGEVLDSANVLPGTVWQVVSEEWMAQWRKFVQSRGARRYLPPGPITNGELLMRQEV 225
            +AFL +D ARVHIEE+GR+  + LDS     G+ W ++ E W+ +WRKF+  R ARRY PPGPITN  LL+ ++V
Sbjct:  165 LAFLGVDAARVHIEEDGRI-SKQLDSYGAQQGSAWHMIEEGWLKRWRKFILGRAARRYDPPGPITNELLLVPRDV 238
[Close]
BLAST of jgi.p|Trimin1|163896 vs. uniprot
Match: A0A7S2WWC7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WWC7_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 6.410e-15
Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 MAFLEIDFARVHIEEEGRVVGEVLDSANVLPGTVWQVVSEEWMAQWRKFVQSRGARRYLPPGPITNGELL 210
            M F  +D  RV IEEE R+   + D   ++ GT WQ+V EEW+ +WR+F+  RGARRY+PPGPI+N  LL
Sbjct:  277 MEFCGVDVHRVMIEEELRLTKLMGDQ--LVKGTYWQIVDEEWLVKWRRFISGRGARRYIPPGPISNHRLL 344
[Close]
BLAST of jgi.p|Trimin1|163896 vs. uniprot
Match: A0A225WS63_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WS63_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 2.190e-6
Identity = 28/70 (40.00%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:    1 MAFLEIDFARVHIEEEGRVVGEVLDSANVLPGTVWQVVSEEWMAQWRKFVQSRGARRYLPPGPITNGELL 210
            MAFLEID  RV  EEE   + ++L  ++     ++ +V   W++ W++FV +      LPPGPITN  LL
Sbjct:  217 MAFLEIDVTRVRAEEEALAI-DILSRSSRSEENIFFIVQNSWISSWKRFVMTCK----LPPGPITNHNLL 281
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163896 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835Z5F7_9STRA1.270e-51100.00DUSP domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2UUX4_9STRA7.740e-2456.76Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S4E9Y7_9STRA2.190e-1961.43Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S3JQL3_9STRA2.340e-1752.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2WWC7_9STRA6.410e-1551.43Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A225WS63_9STRA2.190e-640.00Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_28contigContig_28:279031..280170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163896|e_gw1.28.87.1
DescriptionDUSP domain
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs29Q5X@1|root,2RX7T@2759|Eukaryota
Evalue6.92e-10
Seed ortholog112098.XP_008605168.1
Hectar predicted targeting categoryother localisation
TranscriptId164218
TrackFilteredModels1
ProteinId163896
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163896gene_8984Tribonema minus UTEX_B_3156 geneContig_28 279031..280170 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8984_1exon_8984_1Tribonema minus UTEX_B_3156 exonContig_28 279031..279096 +
exon_8984_2exon_8984_2Tribonema minus UTEX_B_3156 exonContig_28 279994..280170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8984CDS_8984Tribonema minus UTEX_B_3156 CDSContig_28 279031..279096 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163896Trimin1|163896|e_gw1.28.87.1Tribonema minus UTEX_B_3156 polypeptideContig_28 279031..280170 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8984 ID=mRNA_8984|Name=jgi.p|Trimin1|163896|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=243bp|location=Sequence derived from alignment at Contig_28:279031..280170+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTCCTCGAGATCGACTTTGCGCGCGTGCACATCGAGGAGGAGGG
CCGCGTGGTGGGAGAGGTCCTAGATTCCGCCAACGTTTTGCCAGGGACGG
TCTGGCAAGTCGTCAGCGAGGAGTGGATGGCGCAGTGGCGCAAGTTTGTG
CAGAGCAGGGGGGCGCGCCGCTACCTGCCGCCAGGGCCTATTACCAACGG
CGAGCTGCTGATGCGCCAGGAAGTTGTGAAGGAGGTGAAGTAG
back to top

protein sequence of jgi.p|Trimin1|163896

>Trimin1|163896|e_gw1.28.87.1 ID=Trimin1|163896|e_gw1.28.87.1|Name=jgi.p|Trimin1|163896|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=81bp
MAFLEIDFARVHIEEEGRVVGEVLDSANVLPGTVWQVVSEEWMAQWRKFV
QSRGARRYLPPGPITNGELLMRQEVVKEVK*
back to top

mRNA from alignment at Contig_28:279031..280170+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8984 ID=mRNA_8984|Name=jgi.p|Trimin1|163896|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1140bp|location=Sequence derived from alignment at Contig_28:279031..280170+ (Tribonema minus UTEX_B_3156 )
ATGGCGTTCCTCGAGATCGACTTTGCGCGCGTGCACATCGAGGAGGAGGG
CCGCGTGGTGGGAGAGGTGAAGTTCAGAATTCAACTTGAAGTAAAGTTGC
AGGGCACCAATTGAAGCAGTACTCTGGCAGCACGTAGGACGCGGTCAGCA
GACGCCGATTGACACAAAAGTAGCTGTTGACATCGATCCGCAAGCTTTGT
TTCTTCGCCACTGAATGCCCATGCAATACTTTACTTGAGCTCTTACCATA
TCAGCGCCACTGAGCAGGGCACACGTAAAGTAGCTCTCCTGCCCGTTCCT
TGTTGTAGCTGCCGCAGTGCAGCTGCTGCAGGTTCGCAAGCGGCGTTCAG
TCTGCCATGCTGTCAGCAGGGGGTGGACGATCAGTACGTCCTGAACAACA
TCAACCTTTTTTTTAGCATCAAAGCTGGTAGCTCAACTGCTAAGTGCACA
CTGCGCCCCTCATCTCAGTTTTGAATGCTCCAACCCCAACAAGCAGCTTG
TTGCGAATTCTGTGGTCCGCAAACAAGAAGTCGGAAACAGTTTGGCAAGC
CGATAGCGGGGCACCAAACCCGCTGCTCCCCTTTCTCCTTCTGTGGATTG
CTGCTGTTAAGCTCTTCTATGTTAGCATGCAGACTACGCCCTCATTACAT
GGCACCACCCAAACTAGTCATTGTCGCAGGCTGCCCCAGCTTGCGTGGCC
AGGCGCAAACCCTGAACCCTAACCCTAACCCTAGGACACCCAATCCTCAG
CGCCCACTTGTCTGATGTGATCGATGTGTTGCTTTACCTGGTCTCCTCAA
CTGTCACAGGTCCTCGATTCCGCAAACGCGCTGCCGGGCACGGTCTGGCA
AGTCAGGCACCAGCATTAAACCTAACCCCAACCCTAAGTTCACCCAACCC
TCCGCGCCCACTTCTCTGACATAATTAATTCACCGCTGTCGCCGCTCTCC
TTAACTGTCGCAGGTCCTAGATTCCGCCAACGTTTTGCCAGGGACGGTCT
GGCAAGTCGTCAGCGAGGAGTGGATGGCGCAGTGGCGCAAGTTTGTGCAG
AGCAGGGGGGCGCGCCGCTACCTGCCGCCAGGGCCTATTACCAACGGCGA
GCTGCTGATGCGCCAGGAAGTTGTGAAGGAGGTGAAGTAG
back to top

Coding sequence (CDS) from alignment at Contig_28:279031..280170+

>mRNA_8984 ID=mRNA_8984|Name=jgi.p|Trimin1|163896|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=243bp|location=Sequence derived from alignment at Contig_28:279031..280170+ (Tribonema minus UTEX_B_3156 )
ATGGCGTTCCTCGAGATCGACTTTGCGCGCGTGCACATCGAGGAGGAGGG
CCGCGTGGTGGGAGAGGTCCTAGATTCCGCCAACGTTTTGCCAGGGACGG
TCTGGCAAGTCGTCAGCGAGGAGTGGATGGCGCAGTGGCGCAAGTTTGTG
CAGAGCAGGGGGGCGCGCCGCTACCTGCCGCCAGGGCCTATTACCAACGG
CGAGCTGCTGATGCGCCAGGAAGTTGTGAAGGAGGTGAAGTAG
back to top