mRNA_6965 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|51915
Unique NamemRNA_6965
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|51915 vs. uniprot
Match: A0A836CFX4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFX4_9STRA)

HSP 1 Score: 196 bits (499), Expect = 6.590e-59
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 1 
Query:    1 CWCGDWAAAAAAGVCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDAAAAGSEKLLVPSATEAKSVDVQLLLCVLLSMAGSDSASRDCEPSSPPAVVAFASFGTSVPVIAAAPASAAXXXXXXXXXXXXXXXXXXXXXXXXDGSSVRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLADLASVVKTLLNHSLNISREAQARLLRSRLG 666
            CWCGDWAAAAAAGVCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDAAAAGSEKLLVPSATEAKSVDVQLLLCVLLSMAGSDSASRDCEPSSPPAVVAFASFGTSVPVIAAAPASAAXXXXXXXXXXXXXXXXXXXXXXXXDGSSVRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLADLASVVKTLLNHSLNISREAQARLLRSRLG
Sbjct:    1 CWCGDWAAAAAAGVCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDAAAAGSEKLLVPSATEAKSVDVQLLLCVLLSMAGSDSASRDCEPSSPPAVVAFASFGTSVPVIAAAPASAAXXXXXXXXXXXXXXXXXXXXXXXXDGSSVRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLADLASVVKTLLNHSLNISREAQARLLRSRLG 222
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|51915 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CFX4_9STRA6.590e-59100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_27contigContig_27:795041..795913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|51915|CE51914_39
Hectar predicted targeting categoryother localisation
TranscriptId52237
TrackFilteredModels1
ProteinId51915
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|51915gene_6965Tribonema minus UTEX_B_3156 geneContig_27 795041..795913 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6965_1exon_6965_1Tribonema minus UTEX_B_3156 exonContig_27 795041..795913 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6965UTR3_6965Tribonema minus UTEX_B_3156 three_prime_UTRContig_27 795041..795244 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6965CDS_6965Tribonema minus UTEX_B_3156 CDSContig_27 795245..795913 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|51915Trimin1|51915|CE51914_39Tribonema minus UTEX_B_3156 polypeptideContig_27 795245..795913 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6965 ID=mRNA_6965|Name=jgi.p|Trimin1|51915|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=873bp|location=Sequence derived from alignment at Contig_27:795041..795913- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCTGGTGCGGCGACTGGGCTGCTGCTGCTGCAGCTGGCGTTTGTGCCGC
AGGTGGCTGCTGTGCGGAGGCTTCTGCAGGTGATGCTGATGCTGCCGTGG
GATCGCTTGCGGCTGCCTCAGCTCTTGCATCCGCTGATGACGCTGCGGCT
GCGGGCAGCGAGAAGCTGTTAGTGCCTTCGGCCACCGAGGCGAAGTCAGT
CGACGTGCAATTGCTGCTCTGCGTGCTGCTCTCCATGGCGGGCTCCGATT
CTGCGTCTCGTGACTGCGAGCCGTCATCGCCACCAGCAGTGGTGGCGTTT
GCGTCGTTCGGCACGAGCGTGCCGGTAATCGCTGCAGCACCGGCGTCTGC
AGCAGCAGCAGCCTCGTTGGCTTCGTGTGCTGCGGCCACAGCATTCGCAA
CGGCGGCAGCAGCCGATTCGTCGGGAGATGGCTCCTCTGTCCGCTCTGAT
GGCGCCTCGGTCGCAAAGCCGCCGTCTACTGCAACCGCCACATCGGATGC
CGCTATCGCAGTATCAGGCGCCTCCGCTGCACCCGAAGTTGCTGCTGCTG
CTGCTCCAGCATCGGCCTTGCTGGCTGACTTGGCGTCAGTGGTGAAAACT
CTGCTGAACCATTCGCTGAACATCAGTCGAGAGGCGCAGGCTCGCCTGCT
CCGGAGTCGCCTAGGCTAGCGGCCAACGCAAGATGGGGCAGCGCCTCGCT
CCTTCCGCGAGCGCGTCGTCAAACCCAAAAAATACAACTGCTTCGTGATG
CTTGCTGCTCTTTGATGGTTGCTGCTTAGCACTGGTAACGGAATCTCATC
GCCATGACAACATCCGCACGCTGCACTGGACACGCGCCTCCTCTGAGCCC
GGCAACGCTATCGCACTCCTTTC
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protein sequence of jgi.p|Trimin1|51915

>Trimin1|51915|CE51914_39 ID=Trimin1|51915|CE51914_39|Name=jgi.p|Trimin1|51915|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=223bp
CWCGDWAAAAAAGVCAAGGCCAEASAGDADAAVGSLAAASALASADDAAA
AGSEKLLVPSATEAKSVDVQLLLCVLLSMAGSDSASRDCEPSSPPAVVAF
ASFGTSVPVIAAAPASAAAAASLASCAAATAFATAAAADSSGDGSSVRSD
GASVAKPPSTATATSDAAIAVSGASAAPEVAAAAAPASALLADLASVVKT
LLNHSLNISREAQARLLRSRLG*
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mRNA from alignment at Contig_27:795041..795913-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6965 ID=mRNA_6965|Name=jgi.p|Trimin1|51915|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=873bp|location=Sequence derived from alignment at Contig_27:795041..795913- (Tribonema minus UTEX_B_3156 )
TGCTGGTGCGGCGACTGGGCTGCTGCTGCTGCAGCTGGCGTTTGTGCCGC
AGGTGGCTGCTGTGCGGAGGCTTCTGCAGGTGATGCTGATGCTGCCGTGG
GATCGCTTGCGGCTGCCTCAGCTCTTGCATCCGCTGATGACGCTGCGGCT
GCGGGCAGCGAGAAGCTGTTAGTGCCTTCGGCCACCGAGGCGAAGTCAGT
CGACGTGCAATTGCTGCTCTGCGTGCTGCTCTCCATGGCGGGCTCCGATT
CTGCGTCTCGTGACTGCGAGCCGTCATCGCCACCAGCAGTGGTGGCGTTT
GCGTCGTTCGGCACGAGCGTGCCGGTAATCGCTGCAGCACCGGCGTCTGC
AGCAGCAGCAGCCTCGTTGGCTTCGTGTGCTGCGGCCACAGCATTCGCAA
CGGCGGCAGCAGCCGATTCGTCGGGAGATGGCTCCTCTGTCCGCTCTGAT
GGCGCCTCGGTCGCAAAGCCGCCGTCTACTGCAACCGCCACATCGGATGC
CGCTATCGCAGTATCAGGCGCCTCCGCTGCACCCGAAGTTGCTGCTGCTG
CTGCTCCAGCATCGGCCTTGCTGGCTGACTTGGCGTCAGTGGTGAAAACT
CTGCTGAACCATTCGCTGAACATCAGTCGAGAGGCGCAGGCTCGCCTGCT
CCGGAGTCGCCTAGGCTAGCGGCCAACGCAAGATGGGGCAGCGCCTCGCT
CCTTCCGCGAGCGCGTCGTCAAACCCAAAAAATACAACTGCTTCGTGATG
CTTGCTGCTCTTTGATGGTTGCTGCTTAGCACTGGTAACGGAATCTCATC
GCCATGACAACATCCGCACGCTGCACTGGACACGCGCCTCCTCTGAGCCC
GGCAACGCTATCGCACTCCTTTC
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Coding sequence (CDS) from alignment at Contig_27:795041..795913-

>mRNA_6965 ID=mRNA_6965|Name=jgi.p|Trimin1|51915|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=669bp|location=Sequence derived from alignment at Contig_27:795041..795913- (Tribonema minus UTEX_B_3156 )
TGCTGGTGCGGCGACTGGGCTGCTGCTGCTGCAGCTGGCGTTTGTGCCGC
AGGTGGCTGCTGTGCGGAGGCTTCTGCAGGTGATGCTGATGCTGCCGTGG
GATCGCTTGCGGCTGCCTCAGCTCTTGCATCCGCTGATGACGCTGCGGCT
GCGGGCAGCGAGAAGCTGTTAGTGCCTTCGGCCACCGAGGCGAAGTCAGT
CGACGTGCAATTGCTGCTCTGCGTGCTGCTCTCCATGGCGGGCTCCGATT
CTGCGTCTCGTGACTGCGAGCCGTCATCGCCACCAGCAGTGGTGGCGTTT
GCGTCGTTCGGCACGAGCGTGCCGGTAATCGCTGCAGCACCGGCGTCTGC
AGCAGCAGCAGCCTCGTTGGCTTCGTGTGCTGCGGCCACAGCATTCGCAA
CGGCGGCAGCAGCCGATTCGTCGGGAGATGGCTCCTCTGTCCGCTCTGAT
GGCGCCTCGGTCGCAAAGCCGCCGTCTACTGCAACCGCCACATCGGATGC
CGCTATCGCAGTATCAGGCGCCTCCGCTGCACCCGAAGTTGCTGCTGCTG
CTGCTCCAGCATCGGCCTTGCTGGCTGACTTGGCGTCAGTGGTGAAAACT
CTGCTGAACCATTCGCTGAACATCAGTCGAGAGGCGCAGGCTCGCCTGCT
CCGGAGTCGCCTAGGCTAG
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