mRNA_1932 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|163584 vs. uniprot
Match: A0A835Z4I9_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4I9_9STRA) HSP 1 Score: 345 bits (886), Expect = 1.000e-119 Identity = 177/191 (92.67%), Postives = 184/191 (96.34%), Query Frame = 1
Query: 1 MPVADRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPHIDSIEDVQCTDERVQSIRDSYIEHLKGQKAELIERLENQEREIAIKEGQRRALKKERKKYYDKKGRPLVSMSQIPEDVRLPRDRAKKPAEVVTNDEAEDIFSSDDEGESAQESKA 573
MPVADRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPP IDSIEDVQCTDER+QSIRDSYIEHLKGQKAELIERLEN+E+EIAIKE QRRALKKERKKYYDKK RPLV ++QIPE+VRLPRD+AKKPAEVV NDEAEDIFSSDDE ESAQE KA
Sbjct: 1 MPVADRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPRIDSIEDVQCTDERIQSIRDSYIEHLKGQKAELIERLENEEKEIAIKEAQRRALKKERKKYYDKKSRPLVPIAQIPENVRLPRDKAKKPAEVVANDEAEDIFSSDDEAESAQEPKA 191
BLAST of jgi.p|Trimin1|163584 vs. uniprot
Match: A0A835ZEC6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC6_9STRA) HSP 1 Score: 143 bits (360), Expect = 6.200e-40 Identity = 64/111 (57.66%), Postives = 88/111 (79.28%), Query Frame = 1
Query: 4 PVADRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPHIDSIEDVQCTDERVQSIRDSYIEHLKGQKAELIERL 336
PV L D+ Q+Y V+++VAPEGT QKS+++ IR++GC+ +I +AN +ARKLRDSN FFDVY ++T+EWAPLPP +D I+ V TD RVQ++ DS+ EH KGQK E++ERL
Sbjct: 6 PVPHHLTDSSQRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEANRWARKLRDSNTFFDVYVLKTNEWAPLPPRVDEIDSVNFTDGRVQAVFDSHREHQKGQKREMVERL 116
BLAST of jgi.p|Trimin1|163584 vs. uniprot
Match: A0A835Z6B0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6B0_9STRA) HSP 1 Score: 140 bits (352), Expect = 2.790e-38 Identity = 77/188 (40.96%), Postives = 111/188 (59.04%), Query Frame = 1
Query: 1 MPVADRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPHIDSIEDVQCTDERVQSIRDSYIEHLKGQKAELIERLENQEREIAIKEGQRRALKKERKKYYDKKGRPLVSMSQIPEDVRLPRDRAKKPAEVVTNDEAEDIFSSDDEGESAQE 564
+PV DRL++ Q + V+S++AP GT Q + D+MIR+YGC T++ AN +AR LRD+N+ +DV + EW PLPP+ + I+ V TD+RV IR++YI HLKG+KA +IERL+ E DKK RP V + QIP + R + KK + V E D +DDE E+ ++
Sbjct: 18 LPVPDRLKNPKQNFTVLSVIAPTGTNQTAPDLMIRVYGCCDTLESANAFARSLRDANDVYDVLVMPNFEWIPLPPNFEEIDYVNYTDKRVTEIRENYISHLKGEKAAMIERLQQDEXXXXXXXXXXXXXXXXXXXXXDKKRRPKVPIDQIPIEYRR---KCKKDSTGVEKLEDSDFSDADDEKEAVED 202
BLAST of jgi.p|Trimin1|163584 vs. uniprot
Match: A0A835YQY9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQY9_9STRA) HSP 1 Score: 138 bits (348), Expect = 3.460e-38 Identity = 60/111 (54.05%), Postives = 89/111 (80.18%), Query Frame = 1
Query: 4 PVADRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPHIDSIEDVQCTDERVQSIRDSYIEHLKGQKAELIERL 336
PV L D+ Q+Y V+++VAP GT QK+K+++IR++GCR ++ +AN +A+ LR+ NNFFDVYT++T+EWAPLPP ID I++V TD RVQ++ DS+ EH KG+K E+++RL
Sbjct: 6 PVPHHLTDSSQRYCVMTVVAPSGTNQKAKELLIRVHGCRESLAEANRWAKSLRNENNFFDVYTLKTNEWAPLPPRIDEIDNVNFTDGRVQAVFDSHREHQKGEKKEMMQRL 116
BLAST of jgi.p|Trimin1|163584 vs. uniprot
Match: A0A836CNB8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNB8_9STRA) HSP 1 Score: 132 bits (332), Expect = 1.970e-36 Identity = 58/106 (54.72%), Postives = 81/106 (76.42%), Query Frame = 1
Query: 4 PVADRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPHIDSIEDVQCTDERVQSIRDSYIEHLKGQKAE 321
PV DRLRD Q++ V+++VAP GT Q+ KDM+IRI+GC+ T ++A+ +AR LRDSN+F+DVY T+EW PLPP + ++E+V TD RVQ I D++ LKG+KAE
Sbjct: 19 PVPDRLRDPRQRFCVLTVVAPRGTGQRCKDMLIRIHGCKETAEEASAWARSLRDSNDFYDVYVASTNEWVPLPPDVSTVEEVGFTDRRVQDIHDNFTAFLKGEKAE 124
BLAST of jgi.p|Trimin1|163584 vs. uniprot
Match: A0A836CF96_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF96_9STRA) HSP 1 Score: 131 bits (329), Expect = 2.800e-36 Identity = 55/101 (54.46%), Postives = 83/101 (82.18%), Query Frame = 1
Query: 34 QKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPHIDSIEDVQCTDERVQSIRDSYIEHLKGQKAELIERL 336
Q++ V+++VAPEGT QKS+DM+IR+YGC+ T+ +AN +A+ +RDS + +DVY ++T+ WAPLPP I I++VQ TD RVQ++ DSY+EH +GQK +++ERL
Sbjct: 1 QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRGQKRDMMERL 101
BLAST of jgi.p|Trimin1|163584 vs. uniprot
Match: A0A6C0CR99_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CR99_9ZZZZ) HSP 1 Score: 67.4 bits (163), Expect = 2.050e-10 Identity = 32/93 (34.41%), Postives = 52/93 (55.91%), Query Frame = 1
Query: 13 DRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPHIDSIEDVQCTDERVQSIRDSY 291
D ++ Q YA++SIVAP T QKS + ++I G T++QA +A++L + + FD+ +EW LPP +D I D D + ++ Y
Sbjct: 46 DSIKLPKQNYALISIVAPHATNQKSDKLCVKIKGVFDTLEQAQAHAQRLMNMDATFDIIVTSMYEWLLLPPPLDHIHDQVYMDNELNTLISEY 138
BLAST of jgi.p|Trimin1|163584 vs. uniprot
Match: A0A835YPU8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU8_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 7.420e-8 Identity = 27/44 (61.36%), Postives = 37/44 (84.09%), Query Frame = 1
Query: 223 PHIDSIEDVQCTDERVQSIRDSYIEHLKGQKAELIERLENQERE 354
PH+ I++VQ TD R+QSIRDSYI+H+KGQK ++IERLE +R+
Sbjct: 54 PHVTQIDNVQFTDSRIQSIRDSYIDHVKGQKRDMIERLEEVDRQ 97 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163584 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1932 ID=mRNA_1932|Name=jgi.p|Trimin1|163584|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=576bp|location=Sequence derived from alignment at Contig_26:543674..544249+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCCCGTAGCTGACAGACTGCGTGACGCGGACCAGAAGTATGCAGTGGTback to top protein sequence of jgi.p|Trimin1|163584 >Trimin1|163584|e_gw1.26.188.1 ID=Trimin1|163584|e_gw1.26.188.1|Name=jgi.p|Trimin1|163584|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=192bp MPVADRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYAback to top mRNA from alignment at Contig_26:543674..544249+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1932 ID=mRNA_1932|Name=jgi.p|Trimin1|163584|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=576bp|location=Sequence derived from alignment at Contig_26:543674..544249+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_26:543674..544249+ >mRNA_1932 ID=mRNA_1932|Name=jgi.p|Trimin1|163584|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=576bp|location=Sequence derived from alignment at Contig_26:543674..544249+ (Tribonema minus UTEX_B_3156 )back to top |